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Improving prediction performance of general protein language model by domain-adaptive pretraining on DNA-binding protein.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52293-7
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- Publication type:
- Article
A conditional protein diffusion model generates artificial programmable endonuclease sequences with enhanced activity.
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- Cell Discovery, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41421-024-00728-2
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- Publication type:
- Article
Improving prediction performance of general protein language model by domain-adaptive pretraining on DNA-binding protein.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52293-7
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- Publication type:
- Article
A perturbation approach for refining Boolean models of cell cycle regulation.
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- PLoS ONE, 2024, v. 19, n. 9, p. 1, doi. 10.1371/journal.pone.0306523
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- Publication type:
- Article
Unlocking the power of AI models: exploring protein folding prediction through comparative analysis.
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- Journal of Integrative Bioinformatics, 2024, v. 21, n. 2, p. 1, doi. 10.1515/jib-2023-0041
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- Article
learnMSA2: deep protein multiple alignments with large language and hidden Markov models.
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- Bioinformatics, 2024, v. 40, p. ii79, doi. 10.1093/bioinformatics/btae381
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- Publication type:
- Article
Advances in the Application of Protein Language Modeling for Nucleic Acid Protein Binding Site Prediction.
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- Genes, 2024, v. 15, n. 8, p. 1090, doi. 10.3390/genes15081090
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- Article
Bioinformatics Study on Site-Specific Variations of Eotaxin-3, a Key Chemokine in Eosinophilic Esophagitis (EoE).
- Published in:
- Genes, 2024, v. 15, n. 8, p. 1073, doi. 10.3390/genes15081073
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- Publication type:
- Article
Molecular docking and antimicrobial activities of photoexcited inhibitors in antimicrobial photodynamic therapy against Enterococcus faecalis biofilms in endodontic infections.
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- AMB Express, 2024, v. 14, n. 1, p. 1, doi. 10.1186/s13568-024-01751-y
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- Publication type:
- Article
PGAT-ABPp: harnessing protein language models and graph attention networks for antibacterial peptide identification with remarkable accuracy.
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- Bioinformatics, 2024, v. 40, n. 8, p. 1, doi. 10.1093/bioinformatics/btae497
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- Publication type:
- Article
Benchmarking of AlphaFold2 accuracy self-estimates as indicators of empirical model quality and ranking: a comparison with independent model quality assessment programmes.
- Published in:
- Bioinformatics, 2024, v. 40, n. 8, p. 1, doi. 10.1093/bioinformatics/btae491
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- Publication type:
- Article
Machine Learning-Driven Biomarker Discovery for Skeletal Complications in Type 1 Gaucher Disease Patients.
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- International Journal of Molecular Sciences, 2024, v. 25, n. 16, p. 8586, doi. 10.3390/ijms25168586
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- Publication type:
- Article
Advanced Bimodal Skew-Symmetric Distributions: Methodology and Application to Cancer Cell Protein Data.
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- Symmetry (20738994), 2024, v. 16, n. 8, p. 985, doi. 10.3390/sym16080985
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- Publication type:
- Article
Proteomics Exploration of Brucella melitensis to Design an Innovative Multi-Epitope mRNA Vaccine.
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- Bioinformatics & Biology Insights, 2024, p. 1, doi. 10.1177/11779322241272404
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- Publication type:
- Article
Photoreactivity of Bis-retinoid A2E Complexed with a Model Protein in Selected Model Systems.
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- Cell Biochemistry & Biophysics, 2020, v. 78, n. 4, p. 415, doi. 10.1007/s12013-020-00942-1
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- Publication type:
- Article
Continuous‐Flow Synthesis of ZIF‐8 Biocomposites with Tunable Particle Size.
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- Angewandte Chemie, 2020, v. 132, n. 21, p. 8200, doi. 10.1002/ange.202000678
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- Publication type:
- Article
Deep learning model with ensemble techniques to compute the secondary structure of proteins.
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- Journal of Supercomputing, 2021, v. 77, n. 5, p. 5104, doi. 10.1007/s11227-020-03467-9
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- Article
DPP4 inhibitor reinforces cell junction proteins in mouse model of short bowel syndrome.
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- Pediatric Surgery International, 2020, v. 36, n. 1, p. 49, doi. 10.1007/s00383-019-04571-5
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- Publication type:
- Article
Proteogenomic Approaches to Understand Gene Mutations and Protein Structural Alterations in Colon Cancer.
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- Physiologia, 2023, v. 3, n. 1, p. 11, doi. 10.3390/physiologia3010002
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- Publication type:
- Article
A Universal Strategy for the Efficient Expression of Nanobodies in Pichia pastoris.
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- Fermentation (Basel), 2024, v. 10, n. 1, p. 37, doi. 10.3390/fermentation10010037
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- Publication type:
- Article
Implementing an Agent-Based Modeling Approach for Protein Glycosylation in the Golgi Apparatus.
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- Fermentation (Basel), 2023, v. 9, n. 9, p. 849, doi. 10.3390/fermentation9090849
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- Publication type:
- Article
Morphology Observation of Two-Dimensional Monolayers of Model Proteins on Water Surface as Revealed by Dropping Method.
- Published in:
- Bioengineering (Basel), 2024, v. 11, n. 4, p. 366, doi. 10.3390/bioengineering11040366
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- Publication type:
- Article
Assessment of the Performances of the Protein Modeling Techniques Participating in CASP15 Using a Structure-Based Functional Site Prediction Approach: ResiRole.
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- Bioengineering (Basel), 2023, v. 10, n. 12, p. 1377, doi. 10.3390/bioengineering10121377
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- Article
Comparison, Analysis, and Molecular Dynamics Simulations of Structures of a Viral Protein Modeled Using Various Computational Tools.
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- Bioengineering (Basel), 2023, v. 10, n. 9, p. 1004, doi. 10.3390/bioengineering10091004
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- Publication type:
- Article
Phylogenetic Analysis and Protein Modelling of Isoflavonoid Synthase Highlights Key Catalytic Sites towards Realising New Bioengineering Endeavours.
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- Bioengineering (Basel), 2022, v. 9, n. 11, p. 609, doi. 10.3390/bioengineering9110609
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- Publication type:
- Article
香菇自交选育新菌株及其亲本子实体的氨基酸特征及蛋白质营养价值.
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- Acta Edulis Fungi, 2019, v. 26, n. 3, p. 51, doi. 10.16488/j.cnki.1005-9873.2019.03.006
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- Publication type:
- Article
Aggresome-Like Formation Promotes Resistance to Proteotoxicity in Cells from Long-Lived Species.
- Published in:
- 2020
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- Publication type:
- journal article
蝙蝠葛酚性碱对 BxPC-3 裸鼠移植瘤 Ptch1、Smo 蛋白表达的影响.
- Published in:
- Progress in Modern Biomedicine, 2020, v. 20, n. 12, p. 2042, doi. 10.13241/j.cnki.pmb.2020.11.008
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- Publication type:
- Article
Experimental models of prion‐like protein propagation.
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- Neuropathology, 2020, v. 40, n. 5, p. 460, doi. 10.1111/neup.12656
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- Publication type:
- Article
Protein Signature Differentiating Neutrophils and Myeloid-Derived Suppressor Cells Determined Using a Human Isogenic Cell Line Model and Protein Profiling.
- Published in:
- Cells (2073-4409), 2024, v. 13, n. 10, p. 795, doi. 10.3390/cells13100795
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- Publication type:
- Article
Suggesting Dictyostelium as a Model for Disease-Related Protein Studies through Myosin II Polymerization Pathway.
- Published in:
- Cells (2073-4409), 2024, v. 13, n. 3, p. 263, doi. 10.3390/cells13030263
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- Publication type:
- Article
Pharmacological Characterization of Purified Full-Length Dopamine Transporter from Drosophila melanogaster.
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- Cells (2073-4409), 2022, v. 11, n. 23, p. 3811, doi. 10.3390/cells11233811
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- Publication type:
- Article
iPCD: A Comprehensive Data Resource of Regulatory Proteins in Programmed Cell Death.
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- Cells (2073-4409), 2022, v. 11, n. 13, p. N.PAG, doi. 10.3390/cells11132018
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- Publication type:
- Article
Direct Conjugation of NEDD8 to the N-Terminus of a Model Protein Can Induce Degradation.
- Published in:
- Cells (2073-4409), 2021, v. 10, n. 4, p. 854, doi. 10.3390/cells10040854
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- Publication type:
- Article
A Microfluidic Single-Cell Cloning (SCC) Device for the Generation of Monoclonal Cells.
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- Cells (2073-4409), 2020, v. 9, n. 6, p. 1482, doi. 10.3390/cells9061482
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- Publication type:
- Article
Glyoxyl-Activated Agarose as Support for Covalently Link Novo-Pro D: Biocatalysts Performance in the Hydrolysis of Casein.
- Published in:
- Catalysts (2073-4344), 2020, v. 10, n. 5, p. 466, doi. 10.3390/catal10050466
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- Publication type:
- Article
Effect of Allopregnanolone on Spatial Memory and Synaptic Proteins in Animal Model of Metabolic Syndrome.
- Published in:
- Brain Sciences (2076-3425), 2021, v. 11, n. 5, p. 644, doi. 10.3390/brainsci11050644
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- Publication type:
- Article
SEMA: Antigen B-cell conformational epitope prediction using deep transfer learning.
- Published in:
- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.960985
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- Publication type:
- Article
The Use of AlphaFold for In Silico Exploration of Drug Targets in the Parasite Trypanosoma cruzi.
- Published in:
- Frontiers in Cellular & Infection Microbiology, 2022, v. 12, p. 1, doi. 10.3389/fcimb.2022.944748
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- Publication type:
- Article
Biallelic mutations in the LPAR6 gene causing autosomal recessive wooly hair/hypotrichosis phenotype in five Pakistani families.
- Published in:
- International Journal of Dermatology, 2019, v. 58, n. 8, p. 946, doi. 10.1111/ijd.14480
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- Publication type:
- Article
Juberg-Hayward syndrome is a cohesinopathy, caused by mutation in ESCO2.
- Published in:
- European Journal of Orthodontics, 2021, v. 43, n. 1, p. 45, doi. 10.1093/ejo/cjaa023
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- Publication type:
- Article
Hierarchical organization and assembly of the archaeal cell sheath from an amyloid-like protein.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42368-2
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- Publication type:
- Article
Dominance vs epistasis: the biophysical origins and plasticity of genetic interactions within and between alleles.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41188-8
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- Publication type:
- Article
Deep transfer learning for inter-chain contact predictions of transmembrane protein complexes.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40426-3
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- Publication type:
- Article
Publisher Correction: Accuracy and data efficiency in deep learning models of protein expression.
- Published in:
- 2023
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- Publication type:
- Correction Notice
Protein complex prediction using Rosetta, AlphaFold, and mass spectrometry covalent labeling.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35593-8
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- Publication type:
- Article
Accuracy and data efficiency in deep learning models of protein expression.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34902-5
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- Publication type:
- Article
Classifiers and their Metrics Quantified.
- Published in:
- Molecular Informatics, 2018, v. 37, n. 1/2, p. 1, doi. 10.1002/minf.201700127
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- Publication type:
- Article
Two Perturbations for Geometry Optimization of Off-lattice Bead Protein Models.
- Published in:
- Molecular Informatics, 2017, v. 36, n. 8, p. n/a, doi. 10.1002/minf.201600096
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- Publication type:
- Article
Multi-Component Protein - Protein Docking Based Protocol with External Scoring for Modeling Dimers of G Protein-Coupled Receptors.
- Published in:
- Molecular Informatics, 2015, v. 34, n. 4, p. 246, doi. 10.1002/minf.201400088
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- Publication type:
- Article