Found: 61

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  • Mitotic recombination of chromosome arm 17q as a cause of loss of heterozygosity of NF1 in neurofibromatosis type 1-associated glomus tumors.

    Published in:
    Genes, Chromosomes & Cancer, 2012, v. 51, n. 5, p. 429, doi. 10.1002/gcc.21928
    By:
    • Stewart, Douglas R.;
    • Pemov, Alexander;
    • Van Loo, Peter;
    • Beert, Eline;
    • Brems, Hilde;
    • Sciot, Raf;
    • Claes, Kathleen;
    • Pak, Evgenia;
    • Dutra, Amalia;
    • Richard Lee, Chyi-Chia;
    • Legius, Eric
    Publication type:
    Article

  • A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes.

    Published in:
    Bioinformatics, 2004, v. 20, n. 12, p. 1974, doi. 10.1093/bioinformatics/bth179
    By:
    • Stein Aerts;
    • Peter Van Loo;
    • Yves Moreau;
    • Bart De Moor
    Publication type:
    Article

  • Copynumber: Efficient algorithms for singleand multi-track copy number segmentation.

    Published in:
    BMC Genomics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2164-13-591
    By:
    • Nilsen, Gro;
    • Liestøl, Knut;
    • Loo, Peter Van;
    • Vollan, Hans Kristian Moen;
    • Eide, Marianne B.;
    • Rueda, Oscar M.;
    • Chin, Suet-Feung;
    • Russell, Roslin;
    • Baumbusch, Lars O.;
    • Caldas, Carlos;
    • Børresen-Dale, Anne-Lise;
    • Lingjærde, Ole Christian
    Publication type:
    Article

  • Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity.

    Published in:
    PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011379
    By:
    • Watkins, Thomas B. K.;
    • Colliver, Emma C.;
    • Huska, Matthew R.;
    • Kaufmann, Tom L.;
    • Lim, Emilia L.;
    • Duncan, Cody B.;
    • Haase, Kerstin;
    • Van Loo, Peter;
    • Swanton, Charles;
    • McGranahan, Nicholas;
    • Schwarz, Roland F.
    Publication type:
    Article

  • Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors.

    Published in:
    Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01355-0
    By:
    • Cheng, Jiqiu;
    • Demeulemeester, Jonas;
    • Wedge, David C.;
    • Vollan, Hans Kristian M.;
    • Pitt, Jason J.;
    • Russnes, Hege G.;
    • Pandey, Bina P.;
    • Nilsen, Gro;
    • Nord, Silje;
    • Bignell, Graham R.;
    • White, Kevin P.;
    • Børresen-Dale, Anne-Lise;
    • Campbell, Peter J.;
    • Kristensen, Vessela N.;
    • Stratton, Michael R.;
    • Lingjærde, Ole Christian;
    • Moreau, Yves;
    • Van Loo, Peter
    Publication type:
    Article

  • Mutational signatures of ionizing radiation in second malignancies.

    Published in:
    Nature Communications, 2016, v. 7, n. 9, p. 12605, doi. 10.1038/ncomms12605
    By:
    • Behjati, Sam;
    • Gundem, Gunes;
    • Wedge, David C.;
    • Roberts, Nicola D.;
    • Tarpey, Patrick S.;
    • Cooke, Susanna L.;
    • Van Loo, Peter;
    • Alexandrov, Ludmil B.;
    • Ramakrishna, Manasa;
    • Davies, Helen;
    • Nik-Zainal, Serena;
    • Hardy, Claire;
    • Latimer, Calli;
    • Raine, Keiran M.;
    • Stebbings, Lucy;
    • Menzies, Andy;
    • Jones, David;
    • Shepherd, Rebecca;
    • Butler, Adam P.;
    • Teague, Jon W.
    Publication type:
    Article

  • Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer.

    Published in:
    Nature Communications, 2015, v. 6, n. 4, p. 6605, doi. 10.1038/ncomms7605
    By:
    • Hong, Matthew K.H.;
    • Macintyre, Geoff;
    • Wedge, David C.;
    • Van Loo, Peter;
    • Patel, Keval;
    • Lunke, Sebastian;
    • Alexandrov, Ludmil B.;
    • Sloggett, Clare;
    • Cmero, Marek;
    • Marass, Francesco;
    • Tsui, Dana;
    • Mangiola, Stefano;
    • Lonie, Andrew;
    • Naeem, Haroon;
    • Sapre, Nikhil;
    • Phal, Pramit M.;
    • Kurganovs, Natalie;
    • Chin, Xiaowen;
    • Kerger, Michael;
    • Warren, Anne Y.
    Publication type:
    Article

  • Heterogeneity of genomic evolution and mutational profiles in multiple myeloma.

    Published in:
    Nature Communications, 2014, v. 5, n. 1, p. 2997, doi. 10.1038/ncomms3997
    By:
    • Bolli, Niccolo;
    • Avet-Loiseau, Hervé;
    • Wedge, David C.;
    • Van Loo, Peter;
    • Alexandrov, Ludmil B.;
    • Martincorena, Inigo;
    • Dawson, Kevin J.;
    • Iorio, Francesco;
    • Nik-Zainal, Serena;
    • Bignell, Graham R.;
    • Hinton, Jonathan W.;
    • Li, Yilong;
    • Tubio, Jose M.C.;
    • McLaren, Stuart;
    • O' Meara, Sarah;
    • Butler, Adam P.;
    • Teague, Jon W.;
    • Mudie, Laura;
    • Anderson, Elizabeth;
    • Rashid, Naim
    Publication type:
    Article

  • Translating insights into tumor evolution to clinical practice: promises and challenges.

    Published in:
    Genome Medicine, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13073-019-0632-z
    By:
    • Fittall, Matthew W.;
    • Van Loo, Peter
    Publication type:
    Article

  • Time series analysis of neoadjuvant chemotherapy and bevacizumab-treated breast carcinomas reveals a systemic shift in genomic aberrations.

    Published in:
    Genome Medicine, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13073-018-0601-y
    By:
    • Höglander, Elen Kristine;
    • Nord, Silje;
    • Wedge, David C.;
    • Lingjærde, Ole Christian;
    • Silwal-Pandit, Laxmi;
    • Gythfeldt, Hedda vdL;
    • Vollan, Hans Kristian Moen;
    • Fleischer, Thomas;
    • Krohn, Marit;
    • Schlitchting, Ellen;
    • Borgen, Elin;
    • Garred, Øystein;
    • Holmen, Marit M.;
    • Wist, Erik;
    • Naume, Bjørn;
    • Van Loo, Peter;
    • Børresen-Dale, Anne-Lise;
    • Engebraaten, Olav;
    • Kristensen, Vessela
    Publication type:
    Article

  • The landscape of cancer genes and mutational processes in breast cancer.

    Published in:
    Nature, 2012, v. 486, n. 7403, p. 400, doi. 10.1038/nature11017
    By:
    • Stephens, Philip J.;
    • Tarpey, Patrick S.;
    • Davies, Helen;
    • Van Loo, Peter;
    • Greenman, Chris;
    • Wedge, David C.;
    • Nik-Zainal, Serena;
    • Martin, Sancha;
    • Varela, Ignacio;
    • Bignell, Graham R.;
    • Yates, Lucy R.;
    • Papaemmanuil, Elli;
    • Beare, David;
    • Butler, Adam;
    • Cheverton, Angela;
    • Gamble, John;
    • Hinton, Jonathan;
    • Jia, Mingming;
    • Jayakumar, Alagu;
    • Jones, David
    Publication type:
    Article

  • Association between crural vessel patency and successful transmetatarsal amputation: a single centre experience.

    Published in:
    South African Journal of Surgery, 2018, v. 56, n. 2, p. 50, doi. 10.17159/2078-5151/2018/v56n2a2351
    By:
    • Kamali, Dariush;
    • Thomas, Matthew;
    • Van Loo, Peter;
    • Nichol, Ian
    Publication type:
    Article

  • Promises and challenges of adoptive T-cell therapies for solid tumours.

    Published in:
    2021
    By:
    • Morotti, Matteo;
    • Albukhari, Ashwag;
    • Alsaadi, Abdulkhaliq;
    • Artibani, Mara;
    • Brenton, James D.;
    • Curbishley, Stuart M.;
    • Dong, Tao;
    • Dustin, Michael L.;
    • Hu, Zhiyuan;
    • McGranahan, Nicholas;
    • Miller, Martin L.;
    • Santana-Gonzalez, Laura;
    • Seymour, Leonard W.;
    • Shi, Tingyan;
    • Van Loo, Peter;
    • Yau, Christopher;
    • White, Helen;
    • Wietek, Nina;
    • Church, David N.;
    • Wedge, David C.
    Publication type:
    journal article

  • Corrigendum: Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue.

    Published in:
    Nature Genetics, 2015, v. 47, n. 6, p. 689, doi. 10.1038/ng0615-689b
    By:
    • Cooper, Colin S;
    • Eeles, Rosalind;
    • Wedge, David C;
    • Van Loo, Peter;
    • Gundem, Gunes;
    • Alexandrov, Ludmil B;
    • Kremeyer, Barbara;
    • Butler, Adam;
    • Lynch, Andrew G;
    • Camacho, Niedzica;
    • Massie, Charlie E;
    • Kay, Jonathan;
    • Luxton, Hayley J;
    • Edwards, Sandra;
    • Kote-Jarai, Zsofia;
    • Dennis, Nening;
    • Merson, Sue;
    • Leongamornlert, Daniel;
    • Zamora, Jorge;
    • Corbishley, Cathy
    Publication type:
    Article

  • Recurrent PTPRB and PLCG1 mutations in angiosarcoma.

    Published in:
    Nature Genetics, 2014, v. 46, n. 4, p. 376, doi. 10.1038/ng.2921
    By:
    • Behjati, Sam;
    • Tarpey, Patrick S;
    • Sheldon, Helen;
    • Martincorena, Inigo;
    • Van Loo, Peter;
    • Gundem, Gunes;
    • Wedge, David C;
    • Ramakrishna, Manasa;
    • Cooke, Susanna L;
    • Pillay, Nischalan;
    • Vollan, Hans Kristian M;
    • Papaemmanuil, Elli;
    • Koss, Hans;
    • Bunney, Tom D;
    • Hardy, Claire;
    • Joseph, Olivia R;
    • Martin, Sancha;
    • Mudie, Laura;
    • Butler, Adam;
    • Teague, Jon W
    Publication type:
    Article

  • Corrigendum: Distinct H3F3A and H3F3B driver mutations define chondroblastoma and giant cell tumor of bone.

    Published in:
    Nature Genetics, 2014, v. 46, n. 3, p. 316, doi. 10.1038/ng0314-316
    By:
    • Behjati, Sam;
    • Tarpey, Patrick S;
    • Presneau, Nadège;
    • Scheipl, Susanne;
    • Pillay, Nischalan;
    • Van Loo, Peter;
    • Wedge, David C;
    • Cooke, Susanna L;
    • Gundem, Gunes;
    • Davies, Helen;
    • Nik-Zainal, Serena;
    • Martin, Sancha;
    • McLaren, Stuart;
    • Goodie, Victoria;
    • Robinson, Ben;
    • Butler, Adam;
    • Teague, Jon W;
    • Halai, Dina;
    • Khatri, Bhavisha;
    • Myklebost, Ola
    Publication type:
    Article

  • RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia.

    Published in:
    Nature Genetics, 2014, v. 46, n. 2, p. 116, doi. 10.1038/ng.2874
    By:
    • Papaemmanuil, Elli;
    • Rapado, Inmaculada;
    • Li, Yilong;
    • Potter, Nicola E;
    • Wedge, David C;
    • Tubio, Jose;
    • Alexandrov, Ludmil B;
    • Van Loo, Peter;
    • Cooke, Susanna L;
    • Marshall, John;
    • Martincorena, Inigo;
    • Hinton, Jonathan;
    • Gundem, Gunes;
    • van Delft, Frederik W;
    • Nik-Zainal, Serena;
    • Jones, David R;
    • Ramakrishna, Manasa;
    • Titley, Ian;
    • Stebbings, Lucy;
    • Leroy, Catherine
    Publication type:
    Article

  • Distinct H3F3A and H3F3B driver mutations define chondroblastoma and giant cell tumor of bone.

    Published in:
    Nature Genetics, 2013, v. 45, n. 12, p. 1479, doi. 10.1038/ng.2814
    By:
    • Behjati, Sam;
    • Tarpey, Patrick S;
    • Presneau, Nadège;
    • Scheipl, Susanne;
    • Pillay, Nischalan;
    • Van Loo, Peter;
    • Wedge, David C;
    • Cooke, Susanna L;
    • Gundem, Gunes;
    • Davies, Helen;
    • Nik-Zainal, Serena;
    • Martin, Sancha;
    • McLaren, Stuart;
    • Goodie, Victoria;
    • Robinson, Ben;
    • Butler, Adam;
    • Teague, Jon W;
    • Halai, Dina;
    • Khatri, Bhavisha;
    • Myklebost, Ola
    Publication type:
    Article

  • Frequent mutation of the major cartilage collagen gene COL2A1 in chondrosarcoma.

    Published in:
    Nature Genetics, 2013, v. 45, n. 8, p. 923, doi. 10.1038/ng.2668
    By:
    • Tarpey, Patrick S;
    • Behjati, Sam;
    • Cooke, Susanna L;
    • Van Loo, Peter;
    • Wedge, David C;
    • Pillay, Nischalan;
    • Marshall, John;
    • O'Meara, Sarah;
    • Davies, Helen;
    • Nik-Zainal, Serena;
    • Beare, David;
    • Butler, Adam;
    • Gamble, John;
    • Hardy, Claire;
    • Hinton, Jonathon;
    • Jia, Ming Ming;
    • Jayakumar, Alagu;
    • Jones, David;
    • Latimer, Calli;
    • Maddison, Mark
    Publication type:
    Article

  • Computational methods for the detection of cis-regulatory modules.

    Published in:
    Briefings in Bioinformatics, 2009, v. 10, n. 5, p. 509, doi. 10.1093/bib/bbp025
    By:
    • Van Loo, Peter;
    • Marynen, Peter
    Publication type:
    Article

  • Next-generation sequencing of disseminated tumor cells.

    Published in:
    Frontiers in Oncology, 2013, v. 3, p. 1, doi. 10.3389/fonc.2013.00320
    By:
    • Møller, Elen K.;
    • Kumar, Parveen;
    • Voet, Thierry;
    • Peterson, April;
    • Loo, Peter Van;
    • Mathiesen, Randi R.;
    • Fjelldal, Renathe;
    • Grundstad, Jason;
    • Borgen, Elin;
    • Baumbusch, Lars O.;
    • Naume, Bjørn;
    • Børresen-Dale, Anne-Lise;
    • White, Kevin P.;
    • Nord, Silje;
    • Kristensen, Vessela N.
    Publication type:
    Article

  • Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08512-7
    By:
    • Cheng, Jiqiu;
    • Demeulemeester, Jonas;
    • Wedge, David C.;
    • Vollan, Hans Kristian M.;
    • Pitt, Jason J.;
    • Russnes, Hege G.;
    • Pandey, Bina P.;
    • Nilsen, Gro;
    • Nord, Silje;
    • Bignell, Graham R.;
    • White, Kevin P.;
    • Børresen-Dale, Anne-Lise;
    • Campbell, Peter J.;
    • Kristensen, Vessela N.;
    • Stratton, Michael R.;
    • Lingjærde, Ole Christian;
    • Moreau, Yves;
    • Van Loo, Peter
    Publication type:
    Article

  • Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors.

    Published in:
    Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07842-2
    By:
    • Jiqiu Cheng;
    • Demeulemeester, Jonas;
    • Wedge, David C.;
    • Vollan, Hans Kristian M.;
    • Pitt, Jason J.;
    • Russnes, Hege G.;
    • Pandey, Bina P.;
    • Nilsen, Gro;
    • Nord, Silje;
    • Bignell, Graham R.;
    • White, Kevin P.;
    • Børresen-Dale, Anne-Lise;
    • Campbell, Peter J.;
    • Kristensen, Vessela N.;
    • Stratton, Michael R.;
    • Lingjærde, Ole Christian;
    • Moreau, Yves;
    • Van Loo, Peter
    Publication type:
    Article

  • Recurrent rearrangements of FOS and FOSB define osteoblastoma.

    Published in:
    Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-04530-z
    By:
    • Fittall, Matthew W.;
    • Mifsud, William;
    • Pillay, Nischalan;
    • Hongtao Ye;
    • Strobl, Anna-Christina;
    • Verfaillie, Annelien;
    • Demeulemeester, Jonas;
    • Lei Zhang;
    • Berisha, Fitim;
    • Tarabichi, Maxime;
    • Young, Matthew D.;
    • Miranda, Elena;
    • Tarpey, Patrick S.;
    • Tirabosco, Roberto;
    • Amary, Fernanda;
    • Grigoriadis, Agamemnon E.;
    • Stratton, Michael R.;
    • Van Loo, Peter;
    • Antonescu, Cristina R.;
    • Campbell, Peter J.
    Publication type:
    Article

  • ABSOLUTE cancer genomics.

    Published in:
    Nature Biotechnology, 2012, v. 30, n. 7, p. 620, doi. 10.1038/nbt.2293
    By:
    • Van Loo, Peter;
    • Campbell, Peter J
    Publication type:
    Article

  • Optimized filtering reduces the error rate in detecting genomic variants by short-read sequencing.

    Published in:
    Nature Biotechnology, 2012, v. 30, n. 1, p. 61, doi. 10.1038/nbt.2053
    By:
    • Reumers, Joke;
    • De Rijk, Peter;
    • Zhao, Hui;
    • Liekens, Anthony;
    • Smeets, Dominiek;
    • Cleary, John;
    • Van Loo, Peter;
    • Van Den Bossche, Maarten;
    • Catthoor, Kirsten;
    • Sabbe, Bernard;
    • Despierre, Evelyn;
    • Vergote, Ignace;
    • Hilbush, Brian;
    • Lambrechts, Diether;
    • Del-Favero, Jurgen
    Publication type:
    Article

  • Erratum: Gene prioritization through genomic data fusion.

    Published in:
    2006
    By:
    • Aerts, Stein;
    • Lambrechts, Diether;
    • Maity, Sunit;
    • Van Loo, Peter;
    • Coessens, Bert;
    • De Smet, Frederik;
    • Tranchevent, Leon-Charles;
    • De Moor, Bart;
    • Marynen, Peter;
    • Hassan, Bassem;
    • Carmeliet, Peter;
    • Moreau, Yves
    Publication type:
    Correction notice

  • Gene prioritization through genomic data fusion.

    Published in:
    Nature Biotechnology, 2006, v. 24, n. 5, p. 537, doi. 10.1038/nbt1203
    By:
    • Aerts, Stein;
    • Lambrechts, Diether;
    • Maity, Sunit;
    • Van Loo, Peter;
    • Coessens, Bert;
    • De Smet, Frederik;
    • Tranchevent, Leon-Charles;
    • De Moor, Bart;
    • Marynen, Peter;
    • Hassan, Bassem;
    • Carmeliet, Peter;
    • Moreau, Yves
    Publication type:
    Article

  • The 5p12 breast cancer susceptibility locus affects MRPS30 expression in estrogen-receptor positive tumors.

    Published in:
    Molecular Oncology, 2014, v. 8, n. 2, p. 273, doi. 10.1016/j.molonc.2013.11.008
    By:
    • Quigley, David A.;
    • Fiorito, Elisa;
    • Nord, Silje;
    • Van Loo, Peter;
    • Alnæs, Grethe Grenaker;
    • Fleischer, Thomas;
    • Tost, Jorg;
    • Moen Vollan, Hans Kristian;
    • Tramm, Trine;
    • Overgaard, Jens;
    • Bukholm, Ida R.;
    • Hurtado, Antoni;
    • Balmain, Allan;
    • Børresen-Dale, Anne-Lise;
    • Kristensen, Vessela
    Publication type:
    Article

  • On the identification of low allele frequency mosaic mutations in the brains of Alzheimer's disease patients.

    Published in:
    Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2015, v. 11, n. 11, p. 1265, doi. 10.1016/j.jalz.2015.02.007
    By:
    • Sala Frigerio, Carlo;
    • Lau, Pierre;
    • Troakes, Claire;
    • Deramecourt, Vincent;
    • Gele, Patrick;
    • Van Loo, Peter;
    • Voet, Thierry;
    • De Strooper, Bart
    Publication type:
    Article

  • Allele-specific multi-sample copy number segmentation in ASCAT.

    Published in:
    Bioinformatics, 2021, v. 37, n. 13, p. 1909, doi. 10.1093/bioinformatics/btaa538
    By:
    • Ross, Edith M.;
    • Haase, Kerstin;
    • Loo, Peter Van;
    • Markowetz, Florian
    Publication type:
    Article

  • Diagnostic value of H3F3A mutations in giant cell tumour of bone compared to osteoclast‐rich mimics.

    Published in:
    Journal of Pathology: Clinical Research, 2015, v. 1, n. 2, p. 113, doi. 10.1002/cjp2.13
    By:
    • Presneau, Nadège;
    • Baumhoer, Daniel;
    • Behjati, Sam;
    • Pillay, Nischalan;
    • Tarpey, Patrick;
    • Campbell, Peter J.;
    • Jundt, Gernot;
    • Hamoudi, Rifat;
    • Wedge, David C.;
    • Loo, Peter Van;
    • Hassan, A. Bassim;
    • Khatri, Bhavisha;
    • Ye, Hongtao;
    • Tirabosco, Roberto;
    • Amary, M. Fernanda;
    • Flanagan, Adrienne M.
    Publication type:
    Article

  • An integrative analysis of the age-associated multi-omic landscape across cancers.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22560-y
    By:
    • Chatsirisupachai, Kasit;
    • Lesluyes, Tom;
    • Paraoan, Luminita;
    • Van Loo, Peter;
    • de Magalhães, João Pedro
    Publication type:
    Article

  • Timing somatic events in the evolution of cancer.

    Published in:
    Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1476-3
    By:
    • Jolly, Clemency;
    • Van Loo, Peter
    Publication type:
    Article

  • EGFR Gene Variants Are Associated with Specific Somatic Aberrations in Glioma.

    Published in:
    PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0047929
    By:
    • Wibom, Carl;
    • Ghasimi, Soma;
    • Van Loo, Peter;
    • Brännström, Thomas;
    • Trygg, Johan;
    • Ching Lau;
    • Henriksson, Roger;
    • Bergenheim, Tommy;
    • Andersson, Ulrika;
    • Rydén, Patrik;
    • Melin, Beatrice
    Publication type:
    Article

  • Evidence for Co-Evolution between Human MicroRNAs and Alu-Repeats.

    Published in:
    PLoS ONE, 2009, v. 4, n. 2, p. 1, doi. 10.1371/journal.pone.0004456
    By:
    • Lehnert, Stefan;
    • van Loo, Peter;
    • Thilakarathne, Pushpike J.;
    • Peter Marynen;
    • Geert Verbeke;
    • Frans C. Schuit
    Publication type:
    Article

  • Mutually exclusive genetic interactions and gene essentiality shape the genomic landscape of primary melanoma.

    Published in:
    Journal of Pathology, 2023, v. 259, n. 1, p. 56, doi. 10.1002/path.6019
    By:
    • Birkeälv, Sofia;
    • Harland, Mark;
    • Matsuyama, Larissa Satiko Alcantara Sekimoto;
    • Rashid, Mamun;
    • Mehta, Ishan;
    • Laye, Jonathan P;
    • Haase, Kerstin;
    • Mell, Tracey;
    • Iyer, Vivek;
    • Robles‐Espinoza, Carla Daniela;
    • McDermott, Ultan;
    • van Loo, Peter;
    • Kuijjer, Marieke L;
    • Possik, Patricia A;
    • Maria Engler, Silvya Stuchi;
    • Bishop, D Timothy;
    • Newton‐Bishop, Julia;
    • Adams, David J
    Publication type:
    Article

  • Leveraging single‐cell sequencing to unravel intratumour heterogeneity and tumour evolution in human cancers.

    Published in:
    Journal of Pathology, 2022, v. 257, n. 4, p. 466, doi. 10.1002/path.5914
    By:
    • Bowes, Amy L;
    • Tarabichi, Maxime;
    • Pillay, Nischalan;
    • Van Loo, Peter
    Publication type:
    Article

  • Drivers underpinning the malignant transformation of giant cell tumour of bone.

    Published in:
    Journal of Pathology, 2020, v. 252, n. 4, p. 433, doi. 10.1002/path.5537
    By:
    • Fittall, Matthew W;
    • Lyskjær, Iben;
    • Ellery, Peter;
    • Lombard, Patrick;
    • Ijaz, Jannat;
    • Strobl, Anna‐Christina;
    • Oukrif, Dahmane;
    • Tarabichi, Maxime;
    • Sill, Martin;
    • Koelsche, Christian;
    • Mechtersheimer, Gunhild;
    • Demeulemeester, Jonas;
    • Tirabosco, Roberto;
    • Amary, Fernanda;
    • Campbell, Peter J;
    • Pfister, Stefan M;
    • Jones, David TW;
    • Pillay, Nischalan;
    • Van Loo, Peter;
    • Behjati, Sam
    Publication type:
    Article

  • Rapid parallel acquisition of somatic mutations after NPM1 in acute myeloid leukaemia evolution.

    Published in:
    British Journal of Haematology, 2017, v. 176, n. 5, p. 825, doi. 10.1111/bjh.13999
    By:
    • Grove, Carolyn S.;
    • Bolli, Niccolo;
    • Manes, Nicla;
    • Varela, Ignacio;
    • Van't Veer, Mars;
    • Bench, Anthony;
    • Eldaly, Hesham;
    • Wedge, David;
    • Van Loo, Peter;
    • Vassiliou, George S.
    Publication type:
    Article

  • DOS MITOS TLAPANECOS DE MALINALTEPEC.

    Published in:
    Tlalocan, 2011, v. 17, p. 61
    By:
    • Cantú, Félix Ramírez;
    • Van Der Loo, Peter L.
    Publication type:
    Article

  • The evolutionary history of lethal metastatic prostate cancer.

    Published in:
    Nature, 2015, v. 520, n. 7547, p. 353, doi. 10.1038/nature14347
    By:
    • Gundem, Gunes;
    • Van Loo, Peter;
    • Kremeyer, Barbara;
    • Alexandrov, Ludmil B.;
    • Tubio, Jose M. C.;
    • Papaemmanuil, Elli;
    • Brewer, Daniel S.;
    • Kallio, Heini M. L.;
    • Högnäs, Gunilla;
    • Annala, Matti;
    • Kivinummi, Kati;
    • Goody, Victoria;
    • Latimer, Calli;
    • O'Meara, Sarah;
    • Dawson, Kevin J.;
    • Isaacs, William;
    • Emmert-Buck, Michael R.;
    • Nykter, Matti;
    • Foster, Christopher;
    • Kote-Jarai, Zsofia
    Publication type:
    Article

  • Whole exome sequencing of adenoid cystic carcinoma.

    Published in:
    2013
    By:
    • Stephens, Philip J;
    • Davies, Helen R;
    • Mitani, Yoshitsugu;
    • Van Loo, Peter;
    • Shlien, Adam;
    • Tarpey, Patrick S;
    • Papaemmanuil, Elli;
    • Cheverton, Angela;
    • Bignell, Graham R;
    • Butler, Adam P;
    • Gamble, John;
    • Gamble, Stephen;
    • Hardy, Claire;
    • Hinton, Jonathan;
    • Jia, Mingming;
    • Jayakumar, Alagu;
    • Jones, David;
    • Latimer, Calli;
    • McLaren, Stuart;
    • McBride, David J
    Publication type:
    journal article

  • Whole exome sequencing of adenoid cystic carcinoma.

    Published in:
    Journal of Clinical Investigation, 2013, v. 123, n. 7, p. 2965, doi. 10.1172/JCI67201
    By:
    • Stephens, Philip J.;
    • Davies, Helen R.;
    • Mitani, Yoshitsugu;
    • Van Loo, Peter;
    • Shlien, Adam;
    • Tarpey, Patrick S.;
    • Papaemmanuil, Elli;
    • Cheverton, Angela;
    • Bignell, Graham R.;
    • Butler, Adam P.;
    • Gamble, John;
    • Gamble, Stephen;
    • Hardy, Claire;
    • Hinton, Jonathan;
    • Mingming Jia;
    • Jayakumar, Alagu;
    • Jones, David;
    • Latimer, Calli;
    • McLaren, Stuart;
    • McBride, David J.
    Publication type:
    Article

  • Single-cell paired-end genome sequencing reveals structural variation per cell cycle.

    Published in:
    Nucleic Acids Research, 2013, v. 41, n. 12, p. 6119, doi. 10.1093/nar/gkt345
    By:
    • Voet, Thierry;
    • Kumar, Parveen;
    • Van Loo, Peter;
    • Cooke, Susanna L.;
    • Marshall, John;
    • Lin, Meng-Lay;
    • Zamani Esteki, Masoud;
    • Van der Aa, Niels;
    • Mateiu, Ligia;
    • McBride, David J.;
    • Bignell, Graham R.;
    • McLaren, Stuart;
    • Teague, Jon;
    • Butler, Adam;
    • Raine, Keiran;
    • Stebbings, Lucy A.;
    • Quail, Michael A.;
    • D’Hooghe, Thomas;
    • Moreau, Yves;
    • Futreal, P. Andrew
    Publication type:
    Article

  • MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution.

    Published in:
    Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02794-9
    By:
    • Kaufmann, Tom L.;
    • Petkovic, Marina;
    • Watkins, Thomas B. K.;
    • Colliver, Emma C.;
    • Laskina, Sofya;
    • Thapa, Nisha;
    • Minussi, Darlan C.;
    • Navin, Nicholas;
    • Swanton, Charles;
    • Van Loo, Peter;
    • Haase, Kerstin;
    • Tarabichi, Maxime;
    • Schwarz, Roland F.
    Publication type:
    Article

  • Integrated study of copy number states and genotype calls using high-density SNP arrays.

    Published in:
    Nucleic Acids Research, 2009, v. 37, n. 16, p. 5365, doi. 10.1093/nar/gkp493
    By:
    • Sun, Wei;
    • Wright, Fred A.;
    • Tang, Zhengzheng;
    • Nordgard, Silje H.;
    • Loo, Peter Van;
    • Yu, Tianwei;
    • Kristensen, Vessela N.;
    • Perou, Charles M.
    Publication type:
    Article

  • Endeavour update: a web resource for gene prioritization in multiple species.

    Published in:
    Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W377, doi. 10.1093/nar/gkn325
    By:
    • Tranchevent, Léon-Charles;
    • Barriot, Roland;
    • Yu, Shi;
    • Van Vooren, Steven;
    • Van Loo, Peter;
    • Coessens, Bert;
    • De Moor, Bart;
    • Aerts, Stein;
    • Moreau, Yves
    Publication type:
    Article

  • ORegAnno: an open-access community-driven resource for regulatory annotation.

    Published in:
    Nucleic Acids Research, 2008, v. 36, p. D107
    By:
    • Griffith, Obi L.;
    • Montgomery, Stephen B.;
    • Bernier, Bridget;
    • Chu, Bryan;
    • Kasaian, Katayoon;
    • Aerts, Stein;
    • Mahony, Shaun;
    • Sleumer, Monica C.;
    • Bilenky, Mikhail;
    • Haeussler, Maximilian;
    • Griffith, Malachi;
    • Gallo, Steven M.;
    • Giardine, Belinda;
    • Hooghe, Bart;
    • Van Loo, Peter;
    • Blanco, Enrique;
    • Ticoll, Amy;
    • Lithwick, Stuart;
    • Portales-Casamar, Elodie;
    • Donaldson, Ian J.
    Publication type:
    Article

  • TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis.

    Published in:
    Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w393, doi. 10.1093/nar/gki354
    By:
    • Aerts, Stein;
    • Van Loo, Peter;
    • Thijs, Gert;
    • Mayer, Herbert;
    • de Martin, Rainer;
    • Moreau, Yves;
    • De Moor, Bart
    Publication type:
    Article