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The plastome of Melocactus glaucescens Buining & Brederoo reveals unique evolutionary features and loss of essential tRNA genes.
Published in:
Planta: An International Journal of Plant Biology, 2022, v. 255, n. 3, p. 1, doi. 10.1007/s00425-022-03841-2
By:
- Dalla Costa, Tanara P.;
- Silva, Maria C.;
- de Santana Lopes, Amanda;
- Gomes Pacheco, Túlio;
- de Oliveira, José D.;
- de Baura, Valter A.;
- Balsanelli, Eduardo;
- Maltempi de Souza, Emanuel;
- de Oliveira Pedrosa, Fábio;
- Rogalski, Marcelo
Publication type:
Article
Phylogenetic and evolutionary features of the plastome of Tropaeolum pentaphyllum Lam. (Tropaeolaceae)
Published in:
Planta: An International Journal of Plant Biology, 2020, v. 252, n. 2, p. 1, doi. 10.1007/s00425-020-03427-w
By:
- Gomes Pacheco, Túlio;
- Morais da Silva, Gleyson;
- de Santana Lopes, Amanda;
- de Oliveira, José Daniel;
- Rogalski, Juliana Marcia;
- Balsanelli, Eduardo;
- Maltempi de Souza, Emanuel;
- de Oliveira Pedrosa, Fábio;
- Rogalski, Marcelo
Publication type:
Article
The plastomes of Astrocaryum aculeatum G. Mey. and A. murumuru Mart. show a flip-flop recombination between two short inverted repeats.
Published in:
Planta: An International Journal of Plant Biology, 2019, v. 250, n. 4, p. 1229, doi. 10.1007/s00425-019-03217-z
By:
- de Santana Lopes, Amanda;
- Gomes Pacheco, Túlio;
- Nascimento da Silva, Odyone;
- Magalhães Cruz, Leonardo;
- Balsanelli, Eduardo;
- Maltempi de Souza, Emanuel;
- de Oliveira Pedrosa, Fábio;
- Rogalski, Marcelo
Publication type:
Article
Genetic, evolutionary and phylogenetic aspects of the plastome of annatto (Bixa orellana L.), the Amazonian commercial species of natural dyes.
Published in:
Planta: An International Journal of Plant Biology, 2019, v. 249, n. 2, p. 563, doi. 10.1007/s00425-018-3023-6
By:
- Gomes Pacheco, Túlio;
- de Santana Lopes, Amanda;
- Monteiro Viana, Gélia Dinah;
- Nascimento da Silva, Odyone;
- Morais da Silva, Gleyson;
- Rogalski, Marcelo;
- do Nascimento Vieira, Leila;
- Guerra, Miguel Pedro;
- Nodari, Rubens Onofre;
- Maltempi de Souza, Emanuel;
- de Oliveira Pedrosa, Fábio;
- Otoni, Wagner Campos
Publication type:
Article
The complete plastome of macaw palm [<italic>Acrocomia aculeata</italic> (Jacq.) Lodd. ex Mart.] and extensive molecular analyses of the evolution of plastid genes in Arecaceae.
Published in:
Planta: An International Journal of Plant Biology, 2018, v. 247, n. 4, p. 1011, doi. 10.1007/s00425-018-2841-x
By:
- de Santana Lopes, Amanda;
- Gomes Pacheco, Túlio;
- Nimz, Tabea;
- do Nascimento Vieira, Leila;
- Guerra, Miguel P.;
- Nodari, Rubens O.;
- de Souza, Emanuel Maltempi;
- de Oliveira Pedrosa, Fábio;
- Rogalski, Marcelo
Publication type:
Article
In silico prediction and expression profile analysis of small non-coding RNAs in Herbaspirillum seropedicae SmR1.
Published in:
BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-019-6402-x
By:
- Dobrzanski, Tatiane;
- Pobre, Vânia;
- Moreno, Leandro Ferreira;
- Barbosa, Helba Cirino de Souza;
- Monteiro, Rose Adele;
- de Oliveira Pedrosa, Fábio;
- de Souza, Emanuel Maltempi;
- Arraiano, Cecília Maria;
- Steffens, Maria Berenice Reynaud
Publication type:
Article
ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense.
Published in:
BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1338-5
By:
- Rubel, Elisa Terumi;
- Raittz, Roberto Tadeu;
- da Rocha Coimbra, Nilson Antonio;
- Gehlen, Michelly Alves Coutinho;
- de Oliveira Pedrosa, Fábio
Publication type:
Article
High Genomic Identity between Clinical and Environmental Strains of Herbaspirillum frisingense Suggests Pre-Adaptation to Different Hosts and Intrinsic Resistance to Multiple Drugs.
Published in:
Antibiotics (2079-6382), 2021, v. 10, n. 11, p. 1409, doi. 10.3390/antibiotics10111409
By:
- Oliveira, Willian Klassen;
- Ávila, Hugo Leonardo;
- Tadra, Michelle Zibeti;
- Cardoso, Rodrigo Luiz;
- Fadel-Pichet, Cyntia Maria Teles;
- de Souza, Emanuel Maltempi;
- de Oliveira Pedrosa, Fábio;
- Faoro, Helisson
Publication type:
Article
Effect of an ntrC mutation on amino acid or urea utilization and on nitrogenase switch-off in Herbaspirillum seropedicae.
Published in:
Canadian Journal of Microbiology, 2008, v. 54, n. 3, p. 235, doi. 10.1139/W07-135
By:
- Gusso, Claudio L.;
- de Souza, Emanuel M.;
- Rigo, Liu Un;
- de Oliveira Pedrosa, Fábio;
- Yates, M. G.;
- de M Rego, Fabiane G.;
- Klassen, Giseli
Publication type:
Article
Two roles for integration host factor at an enhancer-dependent nifA promoter.
Published in:
Molecular Microbiology, 2000, v. 35, n. 4, p. 756, doi. 10.1046/j.1365-2958.2000.01746.x
By:
- Wassem, Roseli;
- de Souza, Emanuel Maltempi;
- Yates, Marshall Geoffrey;
- Pedrosa, Fábio de Oliveira;
- Buck, Martin
Publication type:
Article
Immobilization and Characterization of a New Regioselective and Enantioselective Lipase Obtained from a Metagenomic Library.
Published in:
PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0114945
By:
- Alnoch, Robson Carlos;
- Martini, Viviane Paula;
- Glogauer, Arnaldo;
- Costa, Allen Carolina dos Santos;
- Piovan, Leandro;
- Muller-Santos, Marcelo;
- de Souza, Emanuel Maltempi;
- de Oliveira Pedrosa, Fábio;
- Mitchell, David Alexander;
- Krieger, Nadia
Publication type:
Article
Exopolysaccharide Biosynthesis Enables Mature Biofilm Formation on Abiotic Surfaces by Herbaspirillum seropedicae.
Published in:
PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0110392
By:
- Balsanelli, Eduardo;
- Baura, Válter Antonio de;
- Pedrosa, Fábio de Oliveira;
- Souza, Emanuel Maltempi de;
- Monteiro, Rose Adele
Publication type:
Article
The Complete Chloroplast Genome Sequence of <i>Podocarpus lambertii</i>: Genome Structure, Evolutionary Aspects, Gene Content and SSR Detection.
Published in:
PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0090618
By:
- Vieira, Leila do Nascimento;
- Faoro, Helisson;
- Rogalski, Marcelo;
- Fraga, Hugo Pacheco de Freitas;
- Cardoso, Rodrigo Luis Alves;
- de Souza, Emanuel Maltempi;
- de Oliveira Pedrosa, Fábio;
- Nodari, Rubens Onofre;
- Guerra, Miguel Pedro
Publication type:
Article
An Improved Protocol for Intact Chloroplasts and cpDNA Isolation in Conifers.
Published in:
PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0084792
By:
- Vieira, Leila do Nascimento;
- Faoro, Helisson;
- Fraga, Hugo Pacheco de Freitas;
- Rogalski, Marcelo;
- de Souza, Emanuel Maltempi;
- de Oliveira Pedrosa, Fábio;
- Nodari, Rubens Onofre;
- Guerra, Miguel Pedro
Publication type:
Article
Plastid genome evolution in Amazonian açaí palm (Euterpe oleracea Mart.) and Atlantic forest açaí palm (Euterpe edulis Mart.).
Published in:
Plant Molecular Biology, 2021, v. 105, n. 4/5, p. 559, doi. 10.1007/s11103-020-01109-5
By:
- de Santana Lopes, Amanda;
- Gomes Pacheco, Túlio;
- Nascimento da Silva, Odyone;
- do Nascimento Vieira, Leila;
- Guerra, Miguel Pedro;
- Pacca Luna Mattar, Eduardo;
- de Baura, Valter Antonio;
- Balsanelli, Eduardo;
- Maltempi de Souza, Emanuel;
- de Oliveira Pedrosa, Fábio;
- Rogalski, Marcelo
Publication type:
Article
Plastome sequences of the subgenus Passiflora reveal highly divergent genes and specific evolutionary features.
Published in:
Plant Molecular Biology, 2020, v. 104, n. 1/2, p. 21, doi. 10.1007/s11103-020-01020-z
By:
- Pacheco, Túlio Gomes;
- Lopes, Amanda de Santana;
- Welter, Juliana Fátima;
- Yotoko, Karla Suemy Clemente;
- Otoni, Wagner Campos;
- Vieira, Leila do Nascimento;
- Guerra, Miguel Pedro;
- Nodari, Rubens Onofre;
- Balsanelli, Eduardo;
- Pedrosa, Fábio de Oliveira;
- de Souza, Emanuel Maltempi;
- Rogalski, Marcelo
Publication type:
Article
A two-dimensional proteome reference map of Herbaspirillum seropedicae proteins.
Published in:
Proteomics, 2007, v. 7, n. 20, p. 3759, doi. 10.1002/pmic.200600859
By:
- Chaves, Daniela Fojo Seixas;
- Ferrer, Pércio Pereira;
- de Souza, Emanuel Maltempi;
- Gruz, Leonardo Magalhães;
- Monteiro, Rose Adele;
- de Oliveira Pedrosa, Fábio
Publication type:
Article
The role of NtrC in the adaptation of Herbaspirillum seropedicae SmR1 to nitrogen limitation and to nitrate.
Published in:
Archives of Microbiology, 2024, v. 206, n. 7, p. 1, doi. 10.1007/s00203-024-04044-x
By:
- Bonato, Paloma;
- Camilios-Neto, Doumit;
- Tadra-Sfeir, Michelle Zibetti;
- Mota, Francisco J. Teles;
- Muller-Santos, Marcelo;
- Wassem, Roseli;
- de Souza, Emanuel Maltempi;
- de Oliveira Pedrosa, Fábio;
- Chubatsu, Leda Satie
Publication type:
Article
Reclassification of Paenibacillus riograndensis as a Genomovar of Paenibacillus sonchi: Genome-Based Metrics Improve Bacterial Taxonomic Classification.
Published in:
Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01849
By:
- Sant'Anna, Fernando H.;
- Ambrosini, Adriana;
- de Souza, Rocheli;
- de Carvalho Fernandes, Gabriela;
- Bach, Evelise;
- Balsanelli, Eduardo;
- Baura, Valter;
- Brito, Luciana F.;
- Wendisch, Volker F.;
- de Oliveira Pedrosa, Fábio;
- de Souza, Emanuel M.;
- Passaglia, Luciane M. P.
Publication type:
Article
The Linum usitatissimum L. plastome reveals atypical structural evolution, new editing sites, and the phylogenetic position of Linaceae within Malpighiales.
Published in:
Plant Cell Reports, 2018, v. 37, n. 2, p. 307, doi. 10.1007/s00299-017-2231-z
By:
- de Santana Lopes, Amanda;
- Pacheco, Túlio Gomes;
- Santos, Karla Gasparini dos;
- Vieira, Leila do Nascimento;
- Guerra, Miguel Pedro;
- Nodari, Rubens Onofre;
- de Souza, Emanuel Maltempi;
- de Oliveira Pedrosa, Fábio;
- Rogalski, Marcelo
Publication type:
Article
Use of nitrogen-fixing bacteria to improve agricultural productivity.
Published in:
BMC Proceedings, 2014, p. 1, doi. 10.1186/1753-6561-8-S4-O23
By:
- Souza, Emanuel Maltempi;
- Chubatsu, Leda Satie;
- Huergo, Luciano F.;
- Monteiro, Rose;
- Camilios-Neto, Doumit;
- Wassem, Roseli;
- de Oliveira Pedrosa, Fábio
Publication type:
Article
The plastome sequence of the endemic Amazonian conifer, Retrophyllum piresii (Silba) C.N.Page, reveals different recombination events and plastome isoforms.
Published in:
Tree Genetics & Genomes, 2016, v. 12, n. 1, p. 1, doi. 10.1007/s11295-016-0968-0
By:
- do Nascimento Vieira, Leila;
- Rogalski, Marcelo;
- Faoro, Helisson;
- Pacheco de Freitas Fraga, Hugo;
- Goulart dos Anjos, Karina;
- Assine Picchi, Gisele Fernanda;
- Onofre Nodari, Rubens;
- de Oliveira Pedrosa, Fábio;
- Maltempi de Souza, Emanuel;
- Pedro Guerra, Miguel
Publication type:
Article
The plastomes of Lepismium cruciforme (Vell.) Miq and Schlumbergera truncata (Haw.) Moran reveal tribe-specific rearrangements and the first loss of the trnT-GGU gene in Cactaceae.
Published in:
Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09871-1
By:
- Dalla Costa, Tanara P.;
- Silva, Maria C.;
- de Santana Lopes, Amanda;
- Pacheco, Túlio Gomes;
- da Silva, Gleyson Morais;
- de Oliveira, José D.;
- de Baura, Valter A.;
- Balsanelli, Eduardo;
- de Souza, Emanuel Maltempi;
- de Oliveira Pedrosa, Fábio;
- Rogalski, Marcelo
Publication type:
Article
Comparative Genomics Provides Insights into the Taxonomy of Azoarcus and Reveals Separate Origins of Nif Genes in the Proposed Azoarcus and Aromatoleum Genera.
Published in:
Genes, 2021, v. 12, n. 1, p. 71, doi. 10.3390/genes12010071
By:
- Raittz, Roberto Tadeu;
- Reginatto De Pierri, Camilla;
- Maluk, Marta;
- Bueno Batista, Marcelo;
- Carmona, Manuel;
- Junghare, Madan;
- Faoro, Helisson;
- Cruz, Leonardo M.;
- Battistoni, Federico;
- Souza, Emanuel de;
- Pedrosa, Fábio de Oliveira;
- Chen, Wen-Ming;
- Poole, Philip S.;
- Dixon, Ray A.;
- James, Euan K.
Publication type:
Article
Enhanced oxygen consumption in Herbaspirillum seropedicae fnr mutants leads to increased NifA mediated transcriptional activation.
Published in:
BMC Microbiology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12866-015-0432-6
By:
- Batista, Marcelo Bueno;
- Wassem, Roseli;
- de Oliveira Pedrosa, Fábio;
- De Souza, Emanuel Maltempi;
- Dixon, Ray;
- Monteiro, Rose Adele
Publication type:
Article

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