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A dynamically growing self-organizing tree (DGSOT) for hierarchical clustering gene expression profiles.
- Published in:
- Bioinformatics, 2004, v. 20, n. 16, p. 2605, doi. 10.1093/bioinformatics/bth292
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- Publication type:
- Article
PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1432
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- Publication type:
- Article
Stabilities of soil organic carbon and carbon cycling genes are higher in natural secondary forests than in artificial plantations in southern China.
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- Land Degradation & Development, 2020, v. 31, n. 18, p. 2986, doi. 10.1002/ldr.3649
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- Publication type:
- Article
Bacteriophage-prokaryote dynamics and interaction within anaerobic digestion processes across time and space.
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- Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0272-8
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- Publication type:
- Article
Microbial functional diversity: From concepts to applications.
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- Ecology & Evolution (20457758), 2019, v. 9, n. 20, p. 12000, doi. 10.1002/ece3.5670
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- Publication type:
- Article
Diversity and interactions of microbial functional genes under differing environmental conditions: insights from a membrane bioreactor and an oxidation ditch.
- Published in:
- Scientific Reports, 2016, p. 18509, doi. 10.1038/srep18509
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- Publication type:
- Article
Crude oil as a microbial seed bank with unexpected functional potentials.
- Published in:
- Scientific Reports, 2015, p. 16057, doi. 10.1038/srep16057
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- Publication type:
- Article
The functional gene composition and metabolic potential of coral-associated microbial communities.
- Published in:
- Scientific Reports, 2015, p. 16191, doi. 10.1038/srep16191
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- Publication type:
- Article
An integrated insight into the response of sedimentary microbial communities to heavy metal contamination.
- Published in:
- Scientific Reports, 2015, p. 14266, doi. 10.1038/srep14266
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- Article
Planting increases the abundance and structure complexity of soil core functional genes relevant to carbon and nitrogen cycling.
- Published in:
- Scientific Reports, 2015, p. 14345, doi. 10.1038/srep14345
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- Publication type:
- Article
From lithotroph- to organotroph-dominant: directional shift of microbial community in sulphidic tailings during phytostabilization.
- Published in:
- Scientific Reports, 2015, p. 12978, doi. 10.1038/srep12978
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- Publication type:
- Article
Elevated CO<sub>2</sub> shifts the functional structure and metabolic potentials of soil microbial communities in a C<sub>4</sub> agroecosystem.
- Published in:
- Scientific Reports, 2015, p. 9316, doi. 10.1038/srep09316
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- Publication type:
- Article
Impacts of the Three Gorges Dam on microbial structure and potential function.
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- Scientific Reports, 2015, p. 8605, doi. 10.1038/srep08605
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- Publication type:
- Article
Illumina sequencing-based analysis of free-living bacterial community dynamics during an Akashiwo sanguine bloom in Xiamen sea, China.
- Published in:
- Scientific Reports, 2015, p. 8476, doi. 10.1038/srep08476
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- Publication type:
- Article
Integrated metagenomics and network analysis of soil microbial community of the forest timberline.
- Published in:
- Scientific Reports, 2015, p. 7994, doi. 10.1038/srep07994
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- Publication type:
- Article
Taxonomic decomposition of the latitudinal gradient in species diversity of North American floras.
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- Journal of Biogeography, 2018, v. 45, n. 2, p. 418, doi. 10.1111/jbi.13131
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- Publication type:
- Article
Root exudates drive soil‐microbe‐nutrient feedbacks in response to plant growth.
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- Plant, Cell & Environment, 2021, v. 44, n. 2, p. 613, doi. 10.1111/pce.13928
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- Publication type:
- Article
Cooperative microbial interactions drive spatial segregation in porous environments.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39991-4
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- Publication type:
- Article
Effect of land use and soil organic matter quality on the structure and function of microbial communities in pastoral soils: Implications for disease suppression.
- Published in:
- PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0196581
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- Publication type:
- Article
Use of in-field bioreactors demonstrate groundwater filtration influences planktonic bacterial community assembly, but not biofilm composition.
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- PLoS ONE, 2018, v. 13, n. 3, p. 1, doi. 10.1371/journal.pone.0194663
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- Publication type:
- Article
Correction: Bacterial community and arsenic functional genes diversity in arsenic contaminated soils from different geographic locations.
- Published in:
- 2017
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- Publication type:
- Correction Notice
Stochasticity in microbiology: managing unpredictability to reach the Sustainable Development Goals.
- Published in:
- Microbial Biotechnology, 2020, v. 13, n. 4, p. 829, doi. 10.1111/1751-7915.13575
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- Publication type:
- Article
Plant–microbe networks in soil are weakened by century‐long use of inorganic fertilizers.
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- Microbial Biotechnology, 2019, v. 12, n. 6, p. 1464, doi. 10.1111/1751-7915.13487
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- Publication type:
- Article
Soil bacterial diversity patterns and drivers along an elevational gradient on Shennongjia Mountain, China.
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- Microbial Biotechnology, 2015, v. 8, n. 4, p. 739, doi. 10.1111/1751-7915.12288
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- Publication type:
- Article
Impacts of Shewanella oneidensis c-type cytochromes on aerobic and anaerobic respiration.
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- Microbial Biotechnology, 2010, v. 3, n. 4, p. 455, doi. 10.1111/j.1751-7915.2010.00181.x
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- Publication type:
- Article
Predictive microbial ecology.
- Published in:
- 2009
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- Publication type:
- Other
Understanding and predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using domain genetic interactions.
- Published in:
- BMC Systems Biology, 2011, v. 5, n. 1, p. 73, doi. 10.1186/1752-0509-5-73
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- Publication type:
- Article
Functional gene arrays-based analysis of fecal microbiomes in patients with liver cirrhosis.
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- BMC Genomics, 2014, v. 15, n. 1, p. 753, doi. 10.1186/1471-2164-15-753
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- Publication type:
- Article
Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system.
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- BMC Genomics, 2012, v. 13, n. 1, p. 210, doi. 10.1186/1471-2164-13-210
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- Publication type:
- Article
Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state.
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- BMC Genomics, 2012, v. 13, n. 1, p. 138, doi. 10.1186/1471-2164-13-138
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- Publication type:
- Article
Toward a theory for diversity gradients: the abundance–adaptation hypothesis.
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- Ecography, 2018, v. 41, n. 2, p. 255, doi. 10.1111/ecog.02314
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- Publication type:
- Article
Regional and global elevational patterns of microbial species richness and evenness.
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- Ecography, 2017, v. 40, n. 3, p. 393, doi. 10.1111/ecog.02216
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- Publication type:
- Article
Coupling temperature‐dependent spatial turnover of microbes and plants using the metabolic theory of ecology.
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- New Phytologist, 2023, v. 238, n. 1, p. 383, doi. 10.1111/nph.18695
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- Publication type:
- Article
Embracing mountain microbiome and ecosystem functions under global change.
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- New Phytologist, 2022, v. 234, n. 6, p. 1987, doi. 10.1111/nph.18051
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- Publication type:
- Article
Methylated arsenic species in plants originate from soil microorganisms.
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- New Phytologist, 2012, v. 193, n. 3, p. 665, doi. 10.1111/j.1469-8137.2011.03956.x
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- Publication type:
- Article
Dramatic Increases of Soil Microbial Functional Gene Diversity at the Treeline Ecotone of Changbai Mountain.
- Published in:
- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01184
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- Publication type:
- Article
Warming Alters Expressions of Microbial Functional Genes Important to Ecosystem Functioning.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00668
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- Publication type:
- Article
Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00579
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- Publication type:
- Article
Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism.
- Published in:
- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00525
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- Publication type:
- Article
Long-Term Oil Contamination Alters the Molecular Ecological Networks of Soil Microbial Functional Genes.
- Published in:
- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00060
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- Publication type:
- Article
Comparative metagenomics reveals impact of contaminants on groundwater microbiomes.
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- Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.01205
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- Publication type:
- Article
Denitrifying and diazotrophic community responses to artificial warming in permafrost and tallgrass prairie soils.
- Published in:
- Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00746
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- Publication type:
- Article
The effects of silver nanoparticles on intact wastewater biofilms.
- Published in:
- Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00680
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- Publication type:
- Article
Farm management, not soil microbial diversity, controls nutrient loss from smallholder tropical agriculture.
- Published in:
- Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.00090
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- Publication type:
- Article
The polycyclic aromatic hydrocarbon degradation potential of Gulf of Mexico native coastal microbial communities after the Deepwater Horizon oil spill.
- Published in:
- Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00205
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- Publication type:
- Article
The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages.
- Published in:
- Ecology Letters, 2016, v. 19, n. 8, p. 926, doi. 10.1111/ele.12630
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- Publication type:
- Article
Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO<sub>2</sub>.
- Published in:
- 2010
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- Publication type:
- Letter
Correspondence: Reply to 'Analytical flaws in a continental-scale forest soil microbial diversity study'.
- Published in:
- Nature Communications, 2017, v. 8, n. 6, p. 15583, doi. 10.1038/ncomms15583
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- Publication type:
- Article
Temperature mediates continental-scale diversity of microbes in forest soils.
- Published in:
- Nature Communications, 2016, v. 7, n. 7, p. 12083, doi. 10.1038/ncomms12083
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- Publication type:
- Article
Aridity threshold in controlling ecosystem nitrogen cycling in arid and semi-arid grasslands.
- Published in:
- Nature Communications, 2014, v. 5, n. 9, p. 4799, doi. 10.1038/ncomms5799
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- Publication type:
- Article