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PleThora: Pleural effusion and thoracic cavity segmentations in diseased lungs for benchmarking chest CT processing pipelines.
- Published in:
- Medical Physics, 2020, v. 47, n. 12, p. 1, doi. 10.1002/mp.14807
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- Publication type:
- Article
PleThora: Pleural effusion and thoracic cavity segmentations in diseased lungs for benchmarking chest CT processing pipelines.
- Published in:
- Medical Physics, 2020, v. 47, n. 11, p. 5941, doi. 10.1002/mp.14424
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- Publication type:
- Article
A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case.
- Published in:
- BMC Systems Biology, 2015, v. 9, p. 1, doi. 10.1186/1752-0509-9-S4-S2
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- Publication type:
- Article
Signaling network prediction by the Ontology Fingerprint enhanced Bayesian network.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-6-S3-S3
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- Publication type:
- Article
Evidence for craniofacial enhancer variation underlying nonsyndromic cleft lip and palate.
- Published in:
- Human Genetics, 2020, v. 139, n. 10, p. 1261, doi. 10.1007/s00439-020-02169-9
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- Publication type:
- Article
Cellular Morphogenesis Under Stress Is Influenced by the Sphingolipid Pathway Gene ISC1 and DNA Integrity Checkpoint Genes in Saccharomyces cerevisiae.
- Published in:
- Genetics, 2011, v. 189, n. 2, p. 533, doi. 10.1534/genetics.111.132092
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- Publication type:
- Article
Finding pathway-modulating genes from a novel Ontology Fingerprint-derived gene network.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 18, p. e138, doi. 10.1093/nar/gku678
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- Publication type:
- Article
Presence of complete murine viral genome sequences in patient-derived xenografts.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22200-5
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- Publication type:
- Article
CNGPLD: case–control copy-number analysis using Gaussian process latent difference.
- Published in:
- Bioinformatics, 2022, v. 38, n. 8, p. 2096, doi. 10.1093/bioinformatics/btac096
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- Publication type:
- Article
Molecular Profiling of Multiple Human Cancers Defines an Inflammatory Cancer-Associated Molecular Pattern and Uncovers KPNA2 as a Uniform Poor Prognostic Cancer Marker.
- Published in:
- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0057911
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- Publication type:
- Article
Improving Transmission Efficiency of Large Sequence Alignment/Map (SAM) Files.
- Published in:
- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028251
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- Publication type:
- Article
SAFER: sub-hypergraph attention-based neural network for predicting effective responses to dose combinations.
- Published in:
- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05873-9
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- Publication type:
- Article
Distinct Profiles of Specialized Pro-resolving Lipid Mediators and Corresponding Receptor Gene Expression in Periodontal Inflammation.
- Published in:
- Frontiers in Immunology, 2020, v. 11, p. 1, doi. 10.3389/fimmu.2020.01307
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- Publication type:
- Article
An informatics research platform to make public gene expression time-course datasets reusable for more scientific discoveries.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa074
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- Publication type:
- Article
Restructured GEO: restructuring Gene Expression Omnibus metadata for genome dynamics analysis.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/bay145
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- Publication type:
- Article
Colorectal cancer drug target prediction using ontology-based inference and network analysis.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav015
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- Publication type:
- Article
Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav034
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- Publication type:
- Article
The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: putting systems biology to work.
- Published in:
- 2017
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- Publication type:
- Proceeding
Transcriptomic and Epigenetic Profiling of Fibroblasts in Idiopathic Pulmonary Fibrosis.
- Published in:
- American Journal of Respiratory Cell & Molecular Biology, 2022, v. 66, n. 1, p. 53, doi. 10.1165/rcmb.2020-0437OC
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- Publication type:
- Article
Use artificial neural network to align biological ontologies.
- Published in:
- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-S2-S16
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- Publication type:
- Article
A comparative study of disease genes and drug targets in the human protein interactome.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S5-S1
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- Publication type:
- Article
Genome3D: A viewer-model framework forintegrating and visualizing multi-scaleepigenomic information within athree-dimensional genome.
- Published in:
- 2010
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- Publication type:
- Product Review
Combining comparative genomics with de novo motif discovery to identify human transcription factor DNA-binding motifs.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. 1, doi. 10.1186/1471-2105-7-S4-S21
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- Publication type:
- Article
Integration of the Gene Ontology into an object-oriented architecture.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. 113, doi. 10.1186/1471-2105-6-113
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- Publication type:
- Article
Transcriptional signature of durable effector T cells elicited by a replication defective HCMV vaccine.
- Published in:
- NPJ Vaccines, 2024, v. 9, n. 1, p. 1, doi. 10.1038/s41541-024-00860-w
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- Publication type:
- Article
Ensemble pretrained language models to extract biomedical knowledge from literature.
- Published in:
- Journal of the American Medical Informatics Association, 2024, v. 31, n. 9, p. 1904, doi. 10.1093/jamia/ocae061
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- Publication type:
- Article
A transformation-based method for auditing the IS-A hierarchy of biomedical terminologies in the Unified Medical Language System.
- Published in:
- 2020
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- Publication type:
- journal article
Virome assembly and annotation in brain tissue based on next‐generation sequencing.
- Published in:
- Cancer Medicine, 2020, v. 9, n. 18, p. 6776, doi. 10.1002/cam4.3325
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- Publication type:
- Article
Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study.
- Published in:
- 2020
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- Publication type:
- journal article
evidence-based lexical pattern approach for quality assurance of Gene Ontology relations.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 3, p. 1, doi. 10.1093/bib/bbac122
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- Publication type:
- Article
Subgingival Microbiome and Specialized Pro-Resolving Lipid Mediator Pathway Profiles Are Correlated in Periodontal Inflammation.
- Published in:
- Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.691216
- By:
- Publication type:
- Article
Sequence-to-expression approach to identify etiological non-coding DNA variations in P53 and cMYC-driven diseases.
- Published in:
- Human Molecular Genetics, 2024, v. 33, n. 19, p. 1697, doi. 10.1093/hmg/ddae109
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- Publication type:
- Article
The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: summary and innovation in genomics.
- Published in:
- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4018-6
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- Publication type:
- Article
Informatics, Data Science, and Artificial Intelligence.
- Published in:
- 2018
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- Publication type:
- journal article
Object-oriented biological system integration: a SARS coronavirus example.
- Published in:
- Bioinformatics, 2005, v. 21, n. 10, p. 2502, doi. 10.1093/bioinformatics/bti344
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- Publication type:
- Article
Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03113-2
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- Publication type:
- Article
The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1797-3
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- Publication type:
- Article
Aging- and alcohol-associated spatial transcriptomic signature in mouse acute pancreatitis reveals heterogeneity of inflammation and potential pathogenic factors.
- Published in:
- Journal of Molecular Medicine, 2024, v. 102, n. 8, p. 1051, doi. 10.1007/s00109-024-02460-6
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- Publication type:
- Article
A statistical framework for biomedical literature mining.
- Published in:
- 2017
- By:
- Publication type:
- journal article
Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD.
- Published in:
- 2019
- By:
- Publication type:
- journal article
Evaluation of genome-wide association study results through development of ontology fingerprints.
- Published in:
- Bioinformatics, 2009, v. 25, n. 10, p. 1314, doi. 10.1093/bioinformatics/btp158
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- Publication type:
- Article