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A catalog of small proteins from the global microbiome.
- Published in:
- Nature Communications, 2024, p. 1, doi. 10.1038/s41467-024-51894-6
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- Publication type:
- Article
Data mining in translational bioinformatics.
- Published in:
- 2014
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- Publication type:
- Journal Article
A survey on evolutionary algorithm based hybrid intelligence in bioinformatics.
- Published in:
- 2014
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- Publication type:
- Journal Article
The exploration of network motifs as potential drug targets from post-translational regulatory networks.
- Published in:
- Scientific Reports, 2016, p. 20558, doi. 10.1038/srep20558
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- Publication type:
- Article
TadA reprogramming to generate potent miniature base editors with high precision.
- Published in:
- Nature Communications, 2023, p. 1, doi. 10.1038/s41467-023-36004-2
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- Publication type:
- Article
TadA orthologs enable both cytosine and adenine editing of base editors.
- Published in:
- Nature Communications, 2023, p. 1, doi. 10.1038/s41467-023-36003-3
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- Publication type:
- Article
Rational design of graphene biohydrogel as a modular platform for highly efficient starch‐to‐bioelectricity.
- Published in:
- AIChE Journal, 2024, v. 70, n. 9, p. 1, doi. 10.1002/aic.18507
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- Publication type:
- Article
STAB2: an updated spatio-temporal cell atlas of the human and mouse brain.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. D1, p. D1033, doi. 10.1093/nar/gkad955
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- Publication type:
- Article
Engineering of cytosine base editors with DNA damage minimization and editing scope diversification.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 20, p. e105, doi. 10.1093/nar/gkad855
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- Publication type:
- Article
A global overview of genetically interpretable multimorbidities among common diseases in the UK Biobank.
- Published in:
- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00927-6
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- Publication type:
- Article
Identifying disease genes and module biomarkers by differential interactions.
- Published in:
- 2012
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- Publication type:
- journal article
Prioritizing genes associated with brain disorders by leveraging enhancer-promoter interactions in diverse neural cells and tissues.
- Published in:
- Genome Medicine, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13073-023-01210-6
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- Publication type:
- Article
Editorial - Data mining in bioinformatics.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 6, p. 1, doi. 10.1142/S0219720015020047
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- Publication type:
- Article
ADVANCES IN GENOME INFORMATICS.
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- Journal of Bioinformatics & Computational Biology, 2010, v. 8, p. v, doi. 10.1142/S0219720010005294
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- Publication type:
- Article
AUTOMATIC MODELING OF SIGNALING PATHWAYS BY NETWORK FLOW MODEL.
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- Journal of Bioinformatics & Computational Biology, 2009, v. 7, n. 2, p. 309, doi. 10.1142/S0219720009004138
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- Publication type:
- Article
A survey on computational strategies for genome-resolved gut metagenomics.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 3, p. 1, doi. 10.1093/bib/bbad162
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- Publication type:
- Article
Deciphering the genetic architecture of human brain structure and function: a brief survey on recent advances of neuroimaging genomics.
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- Briefings in Bioinformatics, 2023, v. 24, n. 2, p. 1, doi. 10.1093/bib/bbad060
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- Publication type:
- Article
MorbidGCN: prediction of multimorbidity with a graph convolutional network based on integration of population phenotypes and disease network.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac255
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- Publication type:
- Article
integrated brain-specific network identifies genes associated with neuropathologic and clinical traits of Alzheimer's disease.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab522
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- Publication type:
- Article
Identifying age-specific gene signatures of the human cerebral cortex with joint analysis of transcriptomes and functional connectomes.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa388
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- Publication type:
- Article
nMAGMA: a network-enhanced method for inferring risk genes from GWAS summary statistics and its application to schizophrenia.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa298
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- Publication type:
- Article
Cellular transcriptional alterations of peripheral blood in Alzheimer's disease.
- Published in:
- BMC Medicine, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12916-022-02472-4
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- Publication type:
- Article
Host DNA contents in fecal metagenomics as a biomarker for intestinal diseases and effective treatment.
- Published in:
- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6749-z
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- Publication type:
- Article
Comments on "Human Dominant Disease Genes Are Enriched in Paralogs Originating from Whole Genome Duplication".
- Published in:
- 2014
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- Publication type:
- Opinion
Human Monogenic Disease Genes Have Frequently Functionally Redundant Paralogs
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 5, p. 1, doi. 10.1371/journal.pcbi.1003073
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- Publication type:
- Article
SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing.
- Published in:
- Bioinformatics, 2023, v. 39, p. i21, doi. 10.1093/bioinformatics/btad209
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- Publication type:
- Article
PhosIDN: an integrated deep neural network for improving protein phosphorylation site prediction by combining sequence and protein–protein interaction information.
- Published in:
- Bioinformatics, 2021, v. 37, n. 24, p. 4668, doi. 10.1093/bioinformatics/btab551
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- Publication type:
- Article
MAT2: manifold alignment of single-cell transcriptomes with cell triplets.
- Published in:
- Bioinformatics, 2021, v. 37, n. 19, p. 3263, doi. 10.1093/bioinformatics/btab250
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- Publication type:
- Article
scTSSR: gene expression recovery for single-cell RNA sequencing using two-side sparse self-representation.
- Published in:
- Bioinformatics, 2020, v. 36, n. 10, p. 3131, doi. 10.1093/bioinformatics/btaa108
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- Publication type:
- Article
EnImpute: imputing dropout events in single-cell RNA-sequencing data via ensemble learning.
- Published in:
- Bioinformatics, 2019, v. 35, n. 22, p. 4827, doi. 10.1093/bioinformatics/btz435
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- Publication type:
- Article
DeepPhos: prediction of protein phosphorylation sites with deep learning.
- Published in:
- Bioinformatics, 2019, v. 35, n. 16, p. 2766, doi. 10.1093/bioinformatics/bty1051
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- Publication type:
- Article
Hierarchical graphical model reveals HFR1 bridging circadian rhythm and flower development in Arabidopsis thaliana.
- Published in:
- NPJ Systems Biology & Applications, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41540-019-0106-3
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- Publication type:
- Article
Docking sites inside Cas9 for adenine base editing diversification and RNA off-target elimination.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19730-9
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- Publication type:
- Article
Prediction of <i>S</i>-Glutathionylation Sites Based on Protein Sequences.
- Published in:
- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0055512
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- Publication type:
- Article
Nanoengineering of CoFe-LDH@Ni(OH)<sub>2</sub> for supercapacitor and water splitting applications.
- Published in:
- Journal of Materials Science, 2024, v. 59, n. 31, p. 14295, doi. 10.1007/s10853-024-10077-w
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- Publication type:
- Article
GEAR: A database of Genomic Elements Associated with drug Resistance.
- Published in:
- Scientific Reports, 2017, p. 44085, doi. 10.1038/srep44085
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- Publication type:
- Article
Differential network analysis from cross-platform gene expression data.
- Published in:
- Scientific Reports, 2016, p. 34112, doi. 10.1038/srep34112
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- Publication type:
- Article
A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29843-y
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- Publication type:
- Article
VirRep: a hybrid language representation learning framework for identifying viruses from human gut metagenomes.
- Published in:
- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03320-9
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- Publication type:
- Article
A discriminative approach for identifying domain-domain interactions from protein-protein interactions.
- Published in:
- Proteins, 2010, v. 78, n. 5, p. 1243, doi. 10.1002/prot.22643
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- Publication type:
- Article
Protein domain annotation with integration of heterogeneous information sources.
- Published in:
- Proteins, 2008, v. 72, n. 1, p. 461, doi. 10.1002/prot.21943
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- Publication type:
- Article
Protein classification with imbalanced data.
- Published in:
- Proteins, 2008, v. 70, n. 4, p. 1125, doi. 10.1002/prot.21870
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- Publication type:
- Article
Guest Editorial.
- Published in:
- IET Systems Biology (Wiley-Blackwell), 2015, v. 9, n. 4, p. 105, doi. 10.1049/iet-syb.2015.0057
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- Publication type:
- Article
Understanding the aristolochic acid toxicities in rat kidneys with regulatory networks.
- Published in:
- IET Systems Biology (Wiley-Blackwell), 2015, v. 9, n. 4, p. 141, doi. 10.1049/iet-syb.2014.0057
- By:
- Publication type:
- Article
A survey on biomarker identification based on molecular networks.
- Published in:
- Quantitative Biology, 2016, v. 4, n. 4, p. 310, doi. 10.1007/s40484-016-0084-z
- By:
- Publication type:
- Article
mBodyMap: a curated database for microbes across human body and their associations with health and diseases.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. D1, p. D808, doi. 10.1093/nar/gkab973
- By:
- Publication type:
- Article
GMrepo v2: a curated human gut microbiome database with special focus on disease markers and cross-dataset comparison.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. D1, p. D777, doi. 10.1093/nar/gkab1019
- By:
- Publication type:
- Article
GMrepo: a database of curated and consistently annotated human gut metagenomes.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. D1, p. D545, doi. 10.1093/nar/gkz764
- By:
- Publication type:
- Article
Victors: a web-based knowledge base of virulence factors in human and animal pathogens.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. D1, p. D693, doi. 10.1093/nar/gky999
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- Publication type:
- Article
MVP: a microbe--phage interaction database.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. D1, p. D700, doi. 10.1093/nar/gkx1124
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- Publication type:
- Article