Works by Zhao, Hongyu

Results: 656

Linkage and linkage disequilibrium mapping of genes influencing human obesity in chromosome region 7q22.1-7q35.

Published in:

2003

By:

Wei-Dong Li;
Li, Wei-Dong;
Ding Li;
Li, Ding;
Wang, Shuang;
Shuang Wang;
Zhang, Shuanglin;
Shuanglin Zhang;
Hongyu Zhao;
Zhao, Hongyu;
Price, R. Arlen

Publication type:

journal article

Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.

Published in:

2017

By:

Hang Zhou;
Polimanti, Renato;
Bao-Zhu Yang;
Qian Wang;
Shizhong Han;
Sherva, Richard;
Nuñez, Yaira Z.;
Hongyu Zhao;
Farrer, Lindsay A.;
Kranzler, Henry R.;
Gelernter, Joel;
Zhou, Hang;
Yang, Bao-Zhu;
Wang, Qian;
Han, Shizhong;
Zhao, Hongyu

Publication type:

journal article

Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.

Published in:

2016

By:

Sherva, Richard;
Qian Wang;
Kranzler, Henry;
Hongyu Zhao;
Koesterer, Ryan;
Herman, Aryeh;
Farrer, Lindsay A.;
Gelernter, Joel;
Wang, Qian;
Zhao, Hongyu

Publication type:

journal article

Susceptibility loci for murine HIV-associated nephropathy encode trans-regulators of podocyte gene expression.

Published in:

2009

By:

Papeta, Natalia;
Ka-Tak Chan;
Prakash, Sindhuri;
Martino, Jeremiah;
Kiryluk, Krzysztof;
Ballard, David;
Bruggeman, Leslie A.;
Frankel, Rachelle;
Zongyu Zheng;
Klotman, Paul E.;
Hongyu Zhao;
D'Agati, Vivette D.;
Lifton, Richard P.;
Gharavi, Ali G.;
Chan, Ka-Tak;
Zheng, Zongyu;
Zhao, Hongyu

Publication type:

journal article

Integrating multidimensional omics data for cancer outcome.

Published in:

2016

By:

RUOQING ZHU;
QING ZHAO;
HONGYU ZHAO;
SHUANGGE MA;
Zhu, Ruoqing;
Zhao, Qing;
Zhao, Hongyu;
Ma, Shuangge

Publication type:

journal article

Natural variation in the GmVPE1 promoter contributes to phosphorus re‐translocation to seeds and improves soybean yield.

Published in:

Plant Biotechnology Journal, 2025, v. 23, n. 4, p. 1359, doi. 10.1111/pbi.14592

By:

Chen, Jiaxin;
Lian, Wenting;
Li, Zhiang;
Guo, Xin;
Li, Yaning;
Zhao, Hongyu;
Yi, Keke;
Li, Xinxin;
Liao, Hong

Publication type:

Article

Stretchable Electronic Facial Masks for Radiofrequency Therapy.

Published in:

Advanced Functional Materials, 2025, v. 35, n. 24, p. 1, doi. 10.1002/adfm.202421075

By:

Zhou, Zanxin;
Xu, Xinkai;
Hu, Jialin;
Zhao, Hongyu;
Li, Shuang;
Chen, Kai;
Gu, Qi;
Su, Yewang

Publication type:

Article

Emerging roles of RNA N<sup>4</sup>-acetylcytidine modification in reproductive health Open Access.

Published in:

Protein & Cell, 2025, v. 16, n. 6, p. 458, doi. 10.1093/procel/pwaf013

By:

Wubulikasimu, Zibaguli;
Zhao, Hongyu;
Mao, Fengbiao;
Zhao, Xiaolu

Publication type:

Article

Genome-wide transcriptome analysis reveal the molecular mechanism for triggering the formation of purple leaves in rice mutants nip-lpl and nip-dpl.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1584423

By:

Wang, Chengyu;
Zhao, Hongyu;
Zhou, Yujie;
Zhang, Haipeng;
Chen, Xinyu;
Liang, Weifang;
Zheng, Han;
Hou, Fan;
Zhang, Junjie;
Xie, Liujie;
Zhao, Mingwei;
Zheng, Bingsong;
Li, Jianzhong

Publication type:

Article

The autophagy protein ATG-9 regulates lysosome function and integrity.

Published in:

Journal of Cell Biology, 2025, v. 224, n. 6, p. 1, doi. 10.1083/jcb.202411092

By:

Kangfu Peng;
Guoxiu Zhao;
Hongyu Zhao;
Noda, Nobuo N.;
Hong Zhang

Publication type:

Article

Building a unified model for drug synergy analysis powered by large language models.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-59822-y

By:

Liu, Tianyu;
Chu, Tinyi;
Luo, Xiao;
Zhao, Hongyu

Publication type:

Article

FPCAM: A Weighted Dictionary-Driven Model for Single-Cell Annotation in Pulmonary Fibrosis.

Published in:

Biology (2079-7737), 2025, v. 14, n. 5, p. 479, doi. 10.3390/biology14050479

By:

Liu, Guojun;
Shi, Yan;
Huang, Hongxu;
Xiao, Ningkun;
Liu, Chuncheng;
Zhao, Hongyu;
Xing, Yongqiang;
Cai, Lu

Publication type:

Article

Degrees of Freedom: Search Cost and Self-Consistency.

Published in:

Journal of Computational & Graphical Statistics, 2025, v. 34, n. 2, p. 630, doi. 10.1080/10618600.2024.2388545

By:

Wang, Lijun;
Zhao, Hongyu;
Fan, Xiaodan

Publication type:

Article

Construction and application of a graded limb activity nursing path of critically ill patients in comprehensive intensive care unit.

Published in:

Chinese Nursing Research, 2025, v. 39, n. 9, p. 1416, doi. 10.12102/j.issn.1009-6493.2025.09.002

By:

LI Bing;
MA Yanlan;
ZHAO Hongyu;
HOU Yunjing;
ZOU Guofen;
LU Cuiling;
WANG Qian;
ZHU Hongjuan;
TANG Sheng

Publication type:

Article

A comprehensive genetic and epidemiological association analysis of vitamin D with common diseases/traits in the UK Biobank.

Published in:

Genetic Epidemiology, 2021, v. 45, n. 1, p. 24, doi. 10.1002/gepi.22357

By:

Ye, Yixuan;
Yang, Hongxi;
Wang, Yaogang;
Zhao, Hongyu

Publication type:

Article

An enhanced machine learning tool for cis‐eQTL mapping with regularization and confounder adjustments.

Published in:

Genetic Epidemiology, 2020, v. 44, n. 8, p. 798, doi. 10.1002/gepi.22341

By:

Yan, Kang K.;
Zhao, Hongyu;
Wu, Joseph T.;
Pang, Herbert

Publication type:

Article

Impact of genotyping errors on statistical power of association tests in genomic analyses: A case study.

Published in:

Genetic Epidemiology, 2017, v. 41, n. 2, p. 152, doi. 10.1002/gepi.22027

By:

Hou, Lin;
Sun, Ning;
Mane, Shrikant;
Sayward, Fred;
Rajeevan, Nallakkandi;
Cheung, Kei‐Hoi;
Cho, Kelly;
Pyarajan, Saiju;
Aslan, Mihaela;
Miller, Perry;
Harvey, Philip D.;
Gaziano, J. Michael;
Concato, John;
Zhao, Hongyu

Publication type:

Article

Analyzing Association Mapping in Pedigree-Based GWAS Using a Penalized Multitrait Mixed Model.

Published in:

Genetic Epidemiology, 2016, v. 40, n. 5, p. 382, doi. 10.1002/gepi.21975

By:

Liu, Jin;
Yang, Can;
Shi, Xingjie;
Li, Cong;
Huang, Jian;
Zhao, Hongyu;
Ma, Shuangge

Publication type:

Article

Identifying Gene-Environment and Gene-Gene Interactions Using a Progressive Penalization Approach.

Published in:

Genetic Epidemiology, 2014, v. 38, n. 4, p. 353, doi. 10.1002/gepi.21807

By:

Zhu, Ruoqing;
Zhao, Hongyu;
Ma, Shuangge

Publication type:

Article

Empirical Bayes Correction for the Winner's Curse in Genetic Association Studies.

Published in:

Genetic Epidemiology, 2013, v. 37, n. 1, p. 60, doi. 10.1002/gepi.21683

By:

Ferguson, John P.;
Cho, Judy H.;
Yang, Can;
Zhao, Hongyu

Publication type:

Article

Biases and Errors on Allele Frequency Estimation and Disease Association Tests of Next-Generation Sequencing of Pooled Samples.

Published in:

Genetic Epidemiology, 2012, v. 36, n. 6, p. 549, doi. 10.1002/gepi.21648

By:

Chen, Xiaowei;
Listman, Jennifer B.;
Slack, Frank J.;
Gelernter, Joel;
Zhao, Hongyu

Publication type:

Article

Identification of association between disease and multiple markers via sparse partial least-squares regression.

Published in:

Genetic Epidemiology, 2011, v. 35, n. 6, p. 479, doi. 10.1002/gepi.20596

By:

Chun, Hyonho;
Ballard, David H.;
Cho, Judy;
Zhao, Hongyu

Publication type:

Article

On optimal pooling designs to identify rare variants through massive resequencing.

Published in:

Genetic Epidemiology, 2011, v. 35, n. 3, p. 139, doi. 10.1002/gepi.20561

By:

Lee, Joon Sang;
Choi, Murim;
Yan, Xiting;
Lifton, Richard P.;
Zhao, Hongyu

Publication type:

Article

Comparisons of multi-marker association methods to detect association between a candidate region and disease.

Published in:

Genetic Epidemiology, 2010, v. 34, n. 3, p. 201, doi. 10.1002/gepi.20448

By:

Ballard, David H.;
Cho, Judy;
Zhao, Hongyu

Publication type:

Article

Evidence for association between multiple complement pathway genes and AMD.

Published in:

Genetic Epidemiology, 2007, v. 31, n. 3, p. 224, doi. 10.1002/gepi.20204

By:

Dinu, Valentin;
Miller, Perry L.;
Zhao, Hongyu

Publication type:

Article

A comparison of several methods for haplotype frequency estimation and haplotype reconstruction for tightly linked markers from general pedigrees.

Published in:

Genetic Epidemiology, 2006, v. 30, n. 5, p. 423, doi. 10.1002/gepi.20154

By:

Kui Zhang;
Hongyu Zhao

Publication type:

Article

Haplotype analysis in the presence of informatively missing genotype data.

Published in:

Genetic Epidemiology, 2006, v. 30, n. 4, p. 290, doi. 10.1002/gepi.20144

By:

Nianjun Liu;
Isabel Beerman;
Richard Lifton;
Hongyu Zhao

Publication type:

Article

Data mining.

Published in:

Genetic Epidemiology, 2005, v. 29, n. S1, p. S103, doi. 10.1002/gepi.20117

By:

Cupples, L. Adrienne;
Bailey, Julia;
Cartier, Kevin C.;
Falk, Catherine T.;
Liu, Kuang-Yu;
Ye, Yuanqing;
Yu, Robert;
Zhang, Heping;
Zhao, Hongyu

Publication type:

Article

Practical population group assignment with selected informative markers: Characteristics and properties of Bayesian clustering via STRUCTURE.

Published in:

Genetic Epidemiology, 2005, v. 28, n. 4, p. 302, doi. 10.1002/gepi.20070

By:

Bao-Zhu Yang;
Hongyu Zhao;
Henry R. Kranzler;
Joel Gelernter

Publication type:

Article

Haplotype block structures show significant variation among populations.

Published in:

Genetic Epidemiology, 2004, v. 27, n. 4, p. 385, doi. 10.1002/gepi.20026

By:

Nianjun Liu;
Sarah L. Sawyer;
Namita Mukherjee;
Andrew J. Pakstis;
Judith R. Kidd;
Kenneth K. Kidd;
Anthony J. Brookes;
Hongyu Zhao

Publication type:

Article

The estimation of sibling genetic risk parameters revisited.

Published in:

Genetic Epidemiology, 2004, v. 26, n. 4, p. 286, doi. 10.1002/gepi.10322

By:

Guohua Zou;
Hongyu Zhao

Publication type:

Article

On a semiparametric test to detect associations between quantitative traits and candidate genes using unrelated individuals.

Published in:

Genetic Epidemiology, 2003, v. 24, n. 1, p. 44, doi. 10.1002/gepi.10196

By:

Zhang, Shuanglin;
Zhu, Xiaofeng;
Zhao, Hongyu

Publication type:

Article

On the use of DNA pooling to estimate haplotype frequencies.

Published in:

Genetic Epidemiology, 2003, v. 24, n. 1, p. 74, doi. 10.1002/gepi.10195

By:

Wang, Shuang;
Kidd, Kenneth K.;
Zhao, Hongyu

Publication type:

Article

Association mapping, using a mixture model for complex traits.

Published in:

Genetic Epidemiology, 2002, v. 23, n. 2, p. 181, doi. 10.1002/gepi.210

By:

Zhu, Xiaofeng;
Zhang, ShuangLin;
Zhao, Hongyu;
Cooper, Richard S.

Publication type:

Article

Linkage disequilibrium mapping with genotype data.

Published in:

Genetic Epidemiology, 2002, v. 22, n. 1, p. 66, doi. 10.1002/gepi.1044

By:

Zhang, Shuanglin;
Zhao, Hongyu

Publication type:

Article

Test of Association for Quantitative Traits in General Pedigrees: The Quantitative Pedigree Disequilibrium Test.

Published in:

Genetic Epidemiology, 2001, v. 21, p. S370, doi. 10.1002/gepi.2001.21.s1.s370

By:

Zhang, Shuanglin;
Zhang, Kui;
Li, Jinming;
Sun, Fengzhu;
Zhao, Hongyu

Publication type:

Article

The Power of Transmission Disequilibrium Tests for Quantitative Traits.

Published in:

Genetic Epidemiology, 2001, v. 21, p. S632, doi. 10.1002/gepi.2001.21.s1.s632

By:

Li, Jinming;
Wang, Dai;
Dong, Jianping;
Jiang, Renfang;
Zhang, Kui;
Zhang, Shuanglin;
Zhao, Hongyu;
Sun, Fengzhu

Publication type:

Article

Linkage disequilibrium mapping in populations of variable size using the decay of haplotype sharing and a stepwise-mutation model.

Published in:

Genetic Epidemiology, 2000, v. 19, n. S1, p. S99, doi. 10.1002/1098-2272(2000)19:1+<::AID-GEPI15>3.0.CO;2-1

By:

Zhang, Shuanglin;
Zhao, Hongyu

Publication type:

Article

A more powerful method to evaluate p-values in GENEHUNTER.

Published in:

Genetic Epidemiology, 1999, v. 17, p. S415, doi. 10.1002/gepi.1370170770

By:

Zhao, Hongyu;
Sheffield, Leslie J.;
Pakstis, Andrew J.;
Knauert, Melissa P.;
Kidd, Kenneth K.

Publication type:

Article

Predicting synergistic effects between compounds through their structural similarity and effects on transcriptomes.

Published in:

Bioinformatics, 2016, v. 32, n. 24, p. 3782, doi. 10.1093/bioinformatics/btw509

By:

Yiyi Liu;
Hongyu Zhao

Publication type:

Article

GenoWAP: GWAS signal prioritization through integrated analysis of genomic functional annotation.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 542, doi. 10.1093/bioinformatics/btv610

By:

Qiongshi Lu;
Xinwei Yao;
Yiming Hu;
Hongyu Zhao

Publication type:

Article

CCLasso: correlation inference for compositional data through Lasso.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3172, doi. 10.1093/bioinformatics/btv349

By:

Huaying Fang;
Chengcheng Huang;
Hongyu Zhao;
Minghua Deng

Publication type:

Article

Joint analysis of expression profiles from multiple cancers improves the identification of microRNA–gene interactions.

Published in:

Bioinformatics, 2013, v. 29, n. 17, p. 2137, doi. 10.1093/bioinformatics/btt341

By:

Chen, Xiaowei;
Slack, Frank J.;
Zhao, Hongyu

Publication type:

Article

Accounting for non-genetic factors by low-rank representation and sparse regression for eQTL mapping.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1026, doi. 10.1093/bioinformatics/btt075

By:

Yang, Can;
Wang, Lin;
Zhang, Shuqin;
Zhao, Hongyu

Publication type:

Article

FacPad: Bayesian sparse factor modeling for the inference of pathways responsive to drug treatment.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2662, doi. 10.1093/bioinformatics/bts502

By:

Ma, Haisu;
Zhao, Hongyu

Publication type:

Article

iFad: an integrative factor analysis model for drug-pathway association inference†.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1911, doi. 10.1093/bioinformatics/bts285

By:

Ma, Haisu;
Zhao, Hongyu

Publication type:

Article

Improved mean estimation and its application to diagonal discriminant analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 4, p. 531, doi. 10.1093/bioinformatics/btr690

By:

Tong, Tiejun;
Chen, Liang;
Zhao, Hongyu

Publication type:

Article

M3: an improved SNP calling algorithm for Illumina BeadArray data.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 358, doi. 10.1093/bioinformatics/btr673

By:

Li, Gengxin;
Gelernter, Joel;
Kranzler, Henry R.;
Zhao, Hongyu

Publication type:

Article

COSINE: COndition-SpecIfic sub-NEtwork identification using a global optimization method.

Published in:

Bioinformatics, 2011, v. 27, n. 9, p. 1290, doi. 10.1093/bioinformatics/btr136

By:

Ma, Haisu;
Schadt, Eric E.;
Kaplan, Lee M.;
Zhao, Hongyu

Publication type:

Article

Pathway analysis using random forests with bivariate node-split for survival outcomes.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 250, doi. 10.1093/bioinformatics/btp640

By:

Pang, Herbert;
Datta, Debayan;
Hongyu Zhao

Publication type:

Article