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Quantitative analysis of oyster larval proteome provides new insights into the effects of multiple climate change stressors.
Published in:
Global Change Biology, 2016, v. 22, n. 6, p. 2054, doi. 10.1111/gcb.13249
By:
- Dineshram, Ramadoss;
- Chandramouli, Kondethimmanahalli;
- Ko, Ginger Wai Kuen;
- Zhang, Huoming;
- Qian, Pei‐Yuan;
- Ravasi, Timothy;
- Thiyagarajan, Vengatesen
Publication type:
Article
The Arabidopsis gene DIG6 encodes a large 60S subunit nuclear export GTPase 1 that is involved in ribosome biogenesis and affects multiple auxin-regulated development processes.
Published in:
Journal of Experimental Botany, 2015, v. 66, n. 21, p. 6863, doi. 10.1093/jxb/erv391
By:
- Huayan Zhao;
- Shiyou Lü;
- Ruixi Li;
- Tao Chen;
- Huoming Zhang;
- Peng Cui;
- Feng Ding;
- Pei Liu;
- Guangchao Wang;
- Yiji Xia;
- Running, Mark P.;
- Liming Xiong
Publication type:
Article
Author Correction: Arabidopsis proteome and the mass spectral assay library.
Published in:
2021
By:
- Zhang, Huoming;
- Liu, Pei;
- Guo, Tiannan;
- Zhao, Huayan;
- Bensaddek, Dalila;
- Aebersold, Ruedi;
- Xiong, Liming
Publication type:
Correction Notice
Arabidopsis proteome and the mass spectral assay library.
Published in:
Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0294-0
By:
- Zhang, Huoming;
- Liu, Pei;
- Guo, Tiannan;
- Zhao, Huayan;
- Bensaddek, Dalila;
- Aebersold, Ruedi;
- Xiong, Liming
Publication type:
Article
Narrow Precursor Mass Range for DIA–MS Enhances Protein Identification and Quantification in Arabidopsis.
Published in:
Life (2075-1729), 2021, v. 11, n. 9, p. 982, doi. 10.3390/life11090982
By:
- Zhang, Huoming;
- Bensaddek, Dalila
Publication type:
Article
SARS-CoV-2 genomes from Saudi Arabia implicate nucleocapsid mutations in host response and increased viral load.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28287-8
By:
- Mourier, Tobias;
- Shuaib, Muhammad;
- Hala, Sharif;
- Mfarrej, Sara;
- Alofi, Fadwa;
- Naeem, Raeece;
- Alsomali, Afrah;
- Jorgensen, David;
- Subudhi, Amit Kumar;
- Ben Rached, Fathia;
- Guan, Qingtian;
- Salunke, Rahul P.;
- Ooi, Amanda;
- Esau, Luke;
- Douvropoulou, Olga;
- Nugmanova, Raushan;
- Perumal, Sadhasivam;
- Zhang, Huoming;
- Rajan, Issaac;
- Al-Omari, Awad
Publication type:
Article
Author Correction: LINE-1 RNA triggers matrix formation in bone cells via a PKR-mediated inflammatory response.
Published in:
2024
By:
- Mangiavacchi, Arianna;
- Morelli, Gabriele;
- Reppe, Sjur;
- Saera-Vila, Alfonso;
- Liu, Peng;
- Eggerschwiler, Benjamin;
- Zhang, Huoming;
- Bensaddek, Dalila;
- Casanova, Elisa A;
- Medina Gomez, Carolina;
- Prijatelj, Vid;
- Della Valle, Francesco;
- Atinbayeva, Nazerke;
- Izpisua Belmonte, Juan Carlos;
- Rivadeneira, Fernando;
- Cinelli, Paolo;
- Gautvik, Kaare Morten;
- Orlando, Valerio
Publication type:
Correction Notice
LINE-1 RNA triggers matrix formation in bone cells via a PKR-mediated inflammatory response.
Published in:
EMBO Journal, 2024, v. 43, n. 17, p. 3587, doi. 10.1038/s44318-024-00143-z
By:
- Mangiavacchi, Arianna;
- Morelli, Gabriele;
- Reppe, Sjur;
- Saera-Vila, Alfonso;
- Liu, Peng;
- Eggerschwiler, Benjamin;
- Zhang, Huoming;
- Bensaddek, Dalila;
- Casanova, Elisa A;
- Medina Gomez, Carolina;
- Prijatelj, Vid;
- Della Valle, Francesco;
- Atinbayeva, Nazerke;
- Izpisua Belmonte, Juan Carlos;
- Rivadeneira, Fernando;
- Cinelli, Paolo;
- Gautvik, Kaare Morten;
- Orlando, Valerio
Publication type:
Article
The caseinolytic protease complex component CLPC1 in Arabidopsis maintains proteome and RNA homeostasis in chloroplasts.
Published in:
BMC Plant Biology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12870-018-1396-0
By:
- Zhang, Shoudong;
- Zhang, Huoming;
- Xia, Yiji;
- Xiong, Liming
Publication type:
Article
Proteomic Changes Associated with Successive Reproductive Periods in Male Polychaetous Neanthes arenaceodentata.
Published in:
Scientific Reports, 2015, p. 13561, doi. 10.1038/srep13561
By:
- Chandramouli, Kondethimmanahalli H.;
- Reish, Donald;
- Zhang, Huoming;
- Qian, Pei-Yuan;
- Ravasi, Timothy
Publication type:
Article
Evidence for a role of protein phosphorylation in the maintenance of the cnidarian–algal symbiosis.
Published in:
Molecular Ecology, 2019, v. 28, n. 24, p. 5373, doi. 10.1111/mec.15298
By:
- Simona, Fabia;
- Zhang, Huoming;
- Voolstra, Christian R.
Publication type:
Article
Impact of the SARS-CoV-2 nucleocapsid 203K/204R mutations on the inflammatory immune response in COVID-19 severity.
Published in:
Genome Medicine, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13073-023-01208-0
By:
- Shuaib, Muhammad;
- Adroub, Sabir;
- Mourier, Tobias;
- Mfarrej, Sara;
- Zhang, Huoming;
- Esau, Luke;
- Alsomali, Afrah;
- Alofi, Fadwa S;
- Ahmad, Adeel Nazir;
- Shamsan, Abbas;
- Khogeer, Asim;
- Hashem, Anwar M.;
- Almontashiri, Naif A. M.;
- Hala, Sharif;
- Pain, Arnab
Publication type:
Article
Quantitative Proteomics Study of Larval Settlement in the Barnacle <i>Balanus amphitrite</i>.
Published in:
PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0088744
By:
- Chen, Zhang-Fan;
- Zhang, Huoming;
- Wang, Hao;
- Matsumura, Kiyotaka;
- Wong, Yue Him;
- Ravasi, Timothy;
- Qian, Pei-Yuan
Publication type:
Article
Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea.
Published in:
BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2262-1
By:
- Chandramouli, Kondethimmanahalli H.;
- Al-Aqeel, Sarah;
- Taewoo Ryu;
- Huoming Zhang;
- Seridi, Loqmane;
- Ghosheh, Yanal;
- Pei-Yuan Qian;
- Ravasi, Timothy
Publication type:
Article
Selective phosphorylation during early macrophage differentiation.
Published in:
Proteomics, 2015, v. 15, n. 21, p. 3731, doi. 10.1002/pmic.201400511
By:
- Zhang, Huoming;
- Qian, Pei‐Yuan;
- Ravasi, Timothy
Publication type:
Article
Quantitative proteomics reveals differential biological processes in healthy neonatal cord neutrophils and adult neutrophils.
Published in:
Proteomics, 2014, v. 14, n. 13/14, p. 1688, doi. 10.1002/pmic.201400009
By:
- Zhu, Jiang;
- Zhang, Huoming;
- Guo, Tiannan;
- Li, Wenying;
- Li, Huiyu;
- Zhu, Yi;
- Huang, Shi'ang
Publication type:
Article
Identification of redox-sensitive cysteines in the Arabidopsis proteome using OxiTRAQ, a quantitative redox proteomics method.
Published in:
Proteomics, 2014, v. 14, n. 6, p. 750, doi. 10.1002/pmic.201300307
By:
- Liu, Pei;
- Zhang, Huoming;
- Wang, Hai;
- Xia, Yiji
Publication type:
Article
Rapid transcriptome and proteome profiling of a non-model marine invertebrate, Bugula neritina.
Published in:
Proteomics, 2010, v. 10, n. 16, p. 2972, doi. 10.1002/pmic.201000056
By:
- Wang, Hao;
- Zhang, Huoming;
- Wong, Yue Him;
- Voolstra, Christian;
- Ravasi, Timothy;
- B. Bajic, Vladimir;
- Qian, Pei-Yuan
Publication type:
Article
Study of monocyte membrane proteome perturbation during lipopolysaccharide-induced tolerance using iTRAQ-based quantitative proteomic approach.
Published in:
Proteomics, 2010, v. 10, n. 15, p. 2780, doi. 10.1002/pmic.201000066
By:
- Zhang, Huoming;
- Zhao, Changqing;
- Li, Xin;
- Zhu, Yi;
- Gan, Chee Sian;
- Wang, Yong;
- Ravasi, Timothy;
- Qian, Pei-Yuan;
- Wong, Siew Cheng;
- Sze, Siu Kwan
Publication type:
Article
Differential recovery of membrane proteins after extraction by aqueous methanol and trifluoroethanol.
Published in:
Proteomics, 2007, v. 7, n. 10, p. 1654, doi. 10.1002/pmic.200600579
By:
- Zhang, Huoming;
- Lin, Qingsong;
- Ponnusamy, Sukumar;
- Kothandaraman, Narasimhan;
- Lim, Teck Kwang;
- Zhao, Changqing;
- Kit, Hon Sook;
- Arijit, Biswas;
- Rauff, Mary;
- Hew, Choy-Leong;
- Chung, Maxey Ching Ming;
- Joshi, Shashikant B.;
- Choolani, Mahesh
Publication type:
Article
MAP4K4 associates with BIK1 to regulate plant innate immunity.
Published in:
EMBO Reports, 2019, v. 20, n. 11, p. N.PAG, doi. 10.15252/embr.201947965
By:
- Jiang, Yunhe;
- Han, Baoda;
- Zhang, Huoming;
- Mariappan, Kiruthiga G;
- Bigeard, Jean;
- Colcombet, Jean;
- Hirt, Heribert
Publication type:
Article
Role of G3BP1 in glucocorticoid receptor-mediated microRNA-15b and microRNA-23a biogenesis in endothelial cells.
Published in:
Cellular & Molecular Life Sciences, 2017, v. 74, n. 19, p. 3613, doi. 10.1007/s00018-017-2540-y
By:
- Kwok, Hoi-Hin;
- Poon, Po-Ying;
- Mak, Kylie;
- Zhang, Lin-Yao;
- Liu, Pei;
- Zhang, Huoming;
- Mak, Nai-Ki;
- Yue, Patrick;
- Wong, Ricky
Publication type:
Article
Comparative proteome analysis of 3T3-L1 adipocyte differentiation using iTRAQ-coupled 2D LC-MS/MS.
Published in:
Journal of Cellular Biochemistry, 2011, v. 112, n. 10, p. 3002, doi. 10.1002/jcb.23223
By:
- Ye, Feng;
- Zhang, Huoming;
- Yang, Yi-Xuan;
- Hu, Huai-Dong;
- Sze, Siu Kwan;
- Meng, Wei;
- Qian, Jingru;
- Ren, Hong;
- Yang, Bao-Lin;
- Luo, Ming-Ying;
- Wu, Xiaoqiong;
- Zhu, Wu;
- Cai, Wei-Jun;
- Tong, Jian-Bin
Publication type:
Article
Proteomic analysis of exosomes from nasopharyngeal carcinoma cell identifies intercellular transfer of angiogenic proteins.
Published in:
International Journal of Cancer, 2015, v. 137, n. 8, p. 1830, doi. 10.1002/ijc.29562
By:
- Chan, Yuk‐Kit;
- Zhang, Huoming;
- Liu, Pei;
- Tsao, Sai‐Wah;
- Lung, Maria Li;
- Mak, Nai‐Ki;
- Ngok‐Shun Wong, Ricky;
- Ying‐Kit Yue, Patrick
Publication type:
Article
Test and Analysis of A Skidding Winch Drum with Combined Shaped Groove.
Published in:
International Journal of Simulation: Systems, Science & Technology, 2016, v. 17, n. 48, p. 11.1, doi. 10.5013/IJSSST.a.17.48.11
By:
- Chuanyu WU;
- Chengjun ZHOU;
- Xinnian ZHOU;
- Zhengxiong ZHANG;
- Rongfeng SHEN;
- Huoming ZHANG
Publication type:
Article
Proteomic identification of early salicylate- and flg22-responsive redox-sensitive proteins in Arabidopsis.
Published in:
Scientific Reports, 2015, p. 8625, doi. 10.1038/srep08625
By:
- Liu, Pei;
- Zhang, Huoming;
- Yu, Boying;
- Xiong, Liming;
- Xia, Yiji
Publication type:
Article
Analysis of the Arabidopsis coilin mutant reveals a positive role of AtCOILIN in plant immunity.
Published in:
Plant Physiology, 2022, v. 190, n. 1, p. 745, doi. 10.1093/plphys/kiac280
By:
- Abulfaraj, Aala A.;
- Alhoraibi, Hanna M.;
- Mariappan, Kiruthiga;
- Bigeard, Jean;
- Huoming Zhang;
- Almeida-Trapp, Marilia;
- Artyukh, Olga;
- Abdulhakim, Fatimah;
- Parween, Sabiha;
- Pflieger, Delphine;
- Blilou, Ikram;
- Hirt, Heribert;
- Rayapuram, Naganand
Publication type:
Article
The Putative E3 Ubiquitin Ligase ECERIFERUM9 Regulates Abscisic Acid Biosynthesis and Response during Seed Germination and Postgermination Growth in Arabidopsis.
Published in:
Plant Physiology, 2014, v. 165, n. 3, p. 1255, doi. 10.1104/pp.114.239699
By:
- Huayan Zhao;
- Huoming Zhang;
- Peng Cui;
- Feng Ding;
- Guangchao Wang;
- Rongjun Li;
- Jenks, Matthew A.;
- Shiyou Lu;
- Liming Xiong
Publication type:
Article
Molecular signatures of transgenerational response to ocean acidification in a species of reef fish.
Published in:
Nature Climate Change, 2016, v. 6, n. 11, p. 1014, doi. 10.1038/nclimate3087
By:
- Schunter, Celia;
- Welch, Megan J.;
- Ryu, Taewoo;
- Zhang, Huoming;
- Berumen, Michael L.;
- Nilsson, Göran E.;
- Munday, Philip L.;
- Ravasi, Timothy
Publication type:
Article
LINE-1 RNA causes heterochromatin erosion and is a target for amelioration of senescent phenotypes in progeroid syndromes.
Published in:
Science Translational Medicine, 2022, v. 14, n. 657, p. 1, doi. 10.1126/scitranslmed.abl6057
By:
- Della Valle, Francesco;
- Reddy, Pradeep;
- Yamamoto, Mako;
- Liu, Peng;
- Saera-Vila, Alfonso;
- Bensaddek, Dalila;
- Zhang, Huoming;
- Prieto Martinez, Javier;
- Abassi, Leila;
- Celii, Mirko;
- Ocampo, Alejandro;
- Nuñez Delicado, Estrella;
- Mangiavacchi, Arianna;
- Aiese Cigliano, Riccardo;
- Rodriguez Esteban, Concepcion;
- Horvath, Steve;
- Izpisua Belmonte, Juan Carlos;
- Orlando, Valerio
Publication type:
Article
Ubiquitin ligases HUWE1 and NEDD4 cooperatively control signal-dependent PRC2-Ezh1α/β-mediated adaptive stress response pathway in skeletal muscle cells.
Published in:
Epigenetics & Chromatin, 2019, v. 12, n. 1, p. 1, doi. 10.1186/s13072-019-0322-5
By:
- Liu, Peng;
- Shuaib, Muhammad;
- Zhang, Huoming;
- Nadeef, Seba;
- Orlando, Valerio
Publication type:
Article
Probing SWATH‐MS as a tool for proteome level quantification in a nonmodel fish.
Published in:
Molecular Ecology Resources, 2020, v. 20, n. 6, p. 1647, doi. 10.1111/1755-0998.13229
By:
- Monroe, Alison A.;
- Zhang, Huoming;
- Schunter, Celia;
- Ravasi, Timothy
Publication type:
Article
Integrated transcriptomic and proteomic analysis of pathogenic mycobacteria and their esx-1 mutants reveal secretion-dependent regulation of ESX-1 substrates and WhiB6 as a transcriptional regulator.
Published in:
PLoS ONE, 2019, v. 14, n. 1, p. 1, doi. 10.1371/journal.pone.0211003
By:
- Abdallah, Abdallah M.;
- Weerdenburg, Eveline M.;
- Guan, Qingtian;
- Ummels, Roy;
- Borggreve, Stephanie;
- Adroub, Sabir A.;
- Malas, Tareq B.;
- Naeem, Raeece;
- Zhang, Huoming;
- Otto, Thomas D.;
- Bitter, Wilbert;
- Pain, Arnab
Publication type:
Article
Study of monocyte membrane proteome perturbation during lipopolysaccharide-induced tolerance using iTRAQ-based quantitative proteomic approach.
Published in:
Proteomics - Clinical Applications, 2010, v. 4, n. 10/11, p. 860, doi. 10.1002/prca.201090077
By:
- Zhang, Huoming;
- Zhao, Changqing;
- Li, Xin;
- Zhu, Yi;
- Gan, Chee Sian;
- Wang, Yong;
- Ravasi, Timothy;
- Qian, Pei-Yuan;
- Wong, Siew Cheng;
- Sze, Siu Kwan
Publication type:
Article
Dependency on de novo protein synthesis and proteomic changes during metamorphosis of the marine bryozoan Bugula neritina.
Published in:
Proteome Science, 2010, v. 8, p. 25, doi. 10.1186/1477-5956-8-25
By:
- Yue Him Wong;
- Arellano, Shawn M.;
- Huoming Zhang;
- Ravasi, Timothy;
- Pei-Yuan Qian
Publication type:
Article

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