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Authors' reply re: The vaginal metabolome and microbiota of cervical HPV-positive and HPV-negative women: a cross-sectional analysis.
Published in:
2020
By:
- Borgogna, Joanna‐Lynn C;
- Shardell, Michelle D;
- Santori, Elisa K;
- Nelson, Tiffanie M;
- Rath, Jessica M;
- Glover, Elbert D;
- Ravel, J;
- Gravitt, Patti;
- Yeoman, Carl J;
- Brotman, Rebecca M;
- Borgogna, Joanna-Lynn C
Publication type:
Letter
Variable responses of human and non-human primate gut microbiomes to a Western diet.
Published in:
Microbiome, 2015, p. 1, doi. 10.1186/s40168-015-0120-7
By:
- Amato, Katherine R.;
- Yeoman, Carl J.;
- Cerda, Gabriela;
- Schmitt, Christopher A.;
- Cramer, Jennifer Danzy;
- Miller, Margret E. Berg;
- Gomez, Andres;
- Turner, Trudy R.;
- Wilson, Brenda A.;
- Stumpf, Rebecca M.;
- Nelson, Karen E.;
- White, Bryan A.;
- Knight, Rob;
- Leigh, Steven R.
Publication type:
Article
The microbiome of the chicken gastrointestinal tract.
Published in:
Animal Health Research Reviews, 2012, v. 13, n. 1, p. 89, doi. 10.1017/S1466252312000138
By:
- Yeoman, Carl J.;
- Chia, Nicholas;
- Jeraldo, Patricio;
- Sipos, Maksim;
- Goldenfeld, Nigel D.;
- White, Bryan A.
Publication type:
Article
Primate vaginal microbiomes exhibit species specificity without universal Lactobacillus dominance.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 12, p. 2431, doi. 10.1038/ismej.2014.90
By:
- Yildirim, Suleyman;
- Yeoman, Carl J;
- Janga, Sarath Chandra;
- Thomas, Susan M;
- Ho, Mengfei;
- Leigh, Steven R;
- Consortium, Primate Microbiome;
- White, Bryan A;
- Wilson, Brenda A;
- Stumpf, Rebecca M
Publication type:
Article
Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 7, p. 1344, doi. 10.1038/ismej.2013.16
By:
- Amato, Katherine R;
- Yeoman, Carl J;
- Kent, Angela;
- Righini, Nicoletta;
- Carbonero, Franck;
- Estrada, Alejandro;
- Rex Gaskins, H;
- Stumpf, Rebecca M;
- Yildirim, Suleyman;
- Torralba, Manolito;
- Gillis, Marcus;
- Wilson, Brenda A;
- Nelson, Karen E;
- White, Bryan A;
- Leigh, Steven R
Publication type:
Article
Determinants of the postprandial triglyceride response to a high-fat meal in healthy overweight and obese adults.
Published in:
Lipids in Health & Disease, 2021, v. 20, n. 1, p. 1, doi. 10.1186/s12944-021-01543-4
By:
- Wilson, Stephanie M.;
- Maes, Adam P.;
- Yeoman, Carl J.;
- Walk, Seth T.;
- Miles, Mary P.
Publication type:
Article
Gut microbiome composition and metabolomic profiles of wild western lowland gorillas ( Gorilla gorilla gorilla) reflect host ecology.
Published in:
Molecular Ecology, 2015, v. 24, n. 10, p. 2551, doi. 10.1111/mec.13181
By:
- Gomez, Andres;
- Petrzelkova, Klara;
- Yeoman, Carl J.;
- Vlckova, Klara;
- Mrázek, Jakub;
- Koppova, Ingrid;
- Carbonero, Franck;
- Ulanov, Alexander;
- Modry, David;
- Todd, Angelique;
- Torralba, Manolito;
- Nelson, Karen E.;
- Gaskins, H. Rex;
- Wilson, Brenda;
- Stumpf, Rebecca M.;
- White, Bryan A.;
- Leigh, Steven R.
Publication type:
Article
Caste-Specific Differences in Hindgut Microbial Communities of Honey Bees (Apis mellifera).
Published in:
PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0123911
By:
- Kapheim, Karen M.;
- Rao, Vikyath D.;
- Yeoman, Carl J.;
- Wilson, Brenda A.;
- White, Bryan A.;
- Goldenfeld, Nigel;
- Robinson, Gene E.
Publication type:
Article
Rumen Cellulosomics: Divergent Fiber-Degrading Strategies Revealed by Comparative Genome-Wide Analysis of Six Ruminococcal Strains.
Published in:
PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0099221
By:
- Dassa, Bareket;
- Borovok, Ilya;
- Ruimy-Israeli, Vered;
- Lamed, Raphael;
- Flint, Harry J.;
- Duncan, Sylvia H.;
- Henrissat, Bernard;
- Coutinho, Pedro;
- Morrison, Mark;
- Mosoni, Pascale;
- Yeoman, Carl J.;
- White, Bryan A.;
- Bayer, Edward A.
Publication type:
Article
Pregnancy's Stronghold on the Vaginal Microbiome.
Published in:
PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0098514
By:
- Walther-António, Marina R. S.;
- Jeraldo, Patricio;
- Berg Miller, Margret E.;
- Yeoman, Carl J.;
- Nelson, Karen E.;
- Wilson, Brenda A.;
- White, Bryan A.;
- Chia, Nicholas;
- Creedon, Douglas J.
Publication type:
Article
Expression of Cellulosome Components and Type IV Pili within the Extracellular Proteome of Ruminococcus flavefaciens 007.
Published in:
PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0065333
By:
- Vodovnik, Maša;
- Duncan, Sylvia H.;
- Reid, Martin D.;
- Cantlay, Louise;
- Turner, Keith;
- Parkhill, Julian;
- Lamed, Raphael;
- Yeoman, Carl J.;
- Miller, Margret E. Berg.;
- White, Bryan A.;
- Bayer, Edward A.;
- Marinšek-Logar, Romana;
- Flint, Harry J.
Publication type:
Article
A Multi-Omic Systems-Based Approach Reveals Metabolic Markers of Bacterial Vaginosis and Insight into the Disease.
Published in:
PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056111
By:
- Yeoman, Carl J.;
- Thomas, Susan M.;
- Miller, Margret E. Berg;
- Ulanov, Alexander V.;
- Torralba, Manolito;
- Lucas, Sarah;
- Gillis, Marcus;
- Cregger, Melissa;
- Gomez, Andres;
- Ho, Mengfei;
- Leigh, Steven R.;
- Stumpf, Rebecca;
- Creedon, Douglas J.;
- Smith, Michael A.;
- Weisbaum, Jon S.;
- Nelson, Karen E.;
- Wilson, Brenda A.;
- White, Bryan A.
Publication type:
Article
Modulation of Systemic Immune Responses through Commensal Gastrointestinal Microbiota.
Published in:
PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0053969
By:
- Schachtschneider, Kyle M.;
- Yeoman, Carl J.;
- Isaacson, Richard E.;
- White, Bryan A.;
- Schook, Lawrence B.;
- Pieters, Maria
Publication type:
Article
Loss of Sex and Age Driven Differences in the Gut Microbiome Characterize Arthritis-Susceptible *0401 Mice but Not Arthritis-Resistant *0402 Mice.
Published in:
PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0036095
By:
- Gomez, Andres;
- Luckey, David;
- Yeoman, Carl J.;
- Marietta, Eric V.;
- Miller, Margret E. Berg;
- Murray, Joseph A.;
- White, Bryan A.;
- Taneja, Veena
Publication type:
Article
Cellulosomics, a Gene-Centric Approach to Investigating the Intraspecific Diversity and Adaptation of Ruminococcus flavefaciens within the Rumen.
Published in:
PLoS ONE, 2011, v. 6, n. 10, p. 1, doi. 10.1371/journal.pone.0025329
By:
- Brulc, Jennifer M.;
- Yeoman, Carl J.;
- Wilson, Melissa K.;
- Miller, Margret E. Berg;
- Jeraldo, Patricio;
- Jindou, Sadanari;
- Goldenfeld, Nigel;
- Flint, Harry J.;
- Lamed, Raphael;
- Borovok, Ilya;
- Vodovnik, Maša;
- Nelson, Karen E.;
- Bayer, Edward A.;
- White, Bryan A.
Publication type:
Article
Characterization of the Fecal Microbiome from Non-Human Wild Primates Reveals Species Specific Microbial Communities.
Published in:
PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0013963
By:
- Yildirim, Suleyman;
- Yeoman, Carl J.;
- Sipos, Maksim;
- Torralba, Manolito;
- Wilson, Brenda A.;
- Goldberg, Tony L.;
- Stumpf, Rebecca M.;
- Leigh, Steven R.;
- White, Bryan A.;
- Nelson, Karen E.
Publication type:
Article
Comparative Genomics of Gardnerella vaginalis Strains Reveals Substantial Differences in Metabolic and Virulence Potential.
Published in:
PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012411
By:
- Yeoman, Carl J.;
- Yildirim, Suleyman;
- Thomas, Susan M.;
- Durkin, A. Scott;
- Torralba, Manolito;
- Sutton, Granger;
- Buhay, Christian J.;
- Ding, Yan;
- Dugan-Rocha, Shannon P.;
- Muzny, Donna M.;
- Xiang Qin;
- Gibbs, Richard A.;
- Leigh, Steven R.;
- Stumpf, Rebecca;
- White, Bryan A.;
- Highlander, Sarah K.;
- Nelson, Karen E.;
- Wilson, Brenda A.
Publication type:
Article
The Glycobiome of the Rumen Bacterium Butyrivibrio proteoclasticus B316T Highlights Adaptation to a Polysaccharide-Rich Environment.
Published in:
PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0011942
By:
- Kelly, William J.;
- Leahy, Sinead C.;
- Altermann, Eric;
- Yeoman, Carl J.;
- Dunne, Jonathan C.;
- Kong, Zhanhao;
- Pacheco, Diana M.;
- Li, Dong;
- Noel, Samantha J.;
- Moon, Christina D.;
- Cookson, Adrian L.;
- Attwood, Graeme T.
Publication type:
Article
The Genome Sequence of the Rumen Methanogen Methanobrevibacter ruminantium Reveals New Possibilities for Controlling Ruminant Methane Emissions.
Published in:
PLoS ONE, 2010, v. 5, n. 1, p. 1, doi. 10.1371/journal.pone.0008926
By:
- Leahy, Sinead C.;
- Kelly, William J.;
- Altermann, Eric;
- Ronimus, Ron S.;
- Yeoman, Carl J.;
- Pacheco, Diana M.;
- Dong Li;
- Zhanhao Kong;
- McTavish, Sharla;
- Sang, Carrie;
- Lambie, Suzanne C.;
- Janssen, Peter H.;
- Dey, Debjit;
- Attwood, Graeme T.
Publication type:
Article
Xylan degradation by the human gut Bacteroides xylanisolvens XB1AT involves two distinct gene clusters that are linked at the transcriptional level.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2680-8
By:
- Despres, Jordane;
- Forano, Evelyne;
- Lepercq, Pascale;
- Comtet-Marre, Sophie;
- Jubelin, Gregory;
- Chambon, Christophe;
- Yeoman, Carl J.;
- Berg Miller, Margaret E.;
- Fields, Christopher J.;
- Martens, Eric;
- Terrapon, Nicolas;
- Henrissat, Bernard;
- White, Bryan A.;
- Mosoni, Pascale
Publication type:
Article
Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2472-1
By:
- Despres, Jordane;
- Forano, Evelyne;
- Lepercq, Pascale;
- Comtet-Marre, Sophie;
- Jubelin, Grégory;
- Yeoman, Carl J.;
- Berg Miller, Margret E.;
- Fields, Christopher J.;
- Terrapon, Nicolas;
- Le Bourvellec, Carine;
- Renard, Catherine M. G. C.;
- Henrissat, Bernard;
- White, Bryan A.;
- Mosoni, Pascale
Publication type:
Article
Evaluation of Dietary Soy Sensitivity in Snake River Cutthroat Trout.
Published in:
North American Journal of Aquaculture, 2015, v. 77, n. 2, p. 195, doi. 10.1080/15222055.2014.993489
By:
- Ham, Brian R.;
- Barrows, Frederic T.;
- Huttinger, Amberly;
- Duff, Glenn C.;
- Yeoman, Carl J.;
- Maskill, Mark G.;
- Sealey, Wendy M.
Publication type:
Article
Vaginal microbiota of American Indian women and associations with measures of psychosocial stress.
Published in:
PLoS ONE, 2021, v. 16, n. 12, p. 1, doi. 10.1371/journal.pone.0260813
By:
- Borgogna, Joanna-Lynn C.;
- Anastario, Michael;
- Firemoon, Paula;
- Rink, Elizabeth;
- Ricker, Adriann;
- Ravel, Jacques;
- Brotman, Rebecca M.;
- Yeoman, Carl J.
Publication type:
Article
The association of Chlamydia trachomatis and Mycoplasma genitalium infection with the vaginal metabolome.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-60179-z
By:
- Borgogna, Joanna-Lynn C.;
- Shardell, Michelle D.;
- Yeoman, Carl J.;
- Ghanem, Khalil G.;
- Kadriu, Herlin;
- Ulanov, Alexander V.;
- Gaydos, Charlotte A.;
- Hardick, Justin;
- Robinson, Courtney K.;
- Bavoil, Patrik M.;
- Ravel, Jacques;
- Brotman, Rebecca M.;
- Tuddenham, Susan
Publication type:
Article
Investigating the relationship between vaginal microbiota and host genetics and their impact on immune response and farrowing traits in commercial gilts.
Published in:
Journal of Animal Breeding & Genetics, 2020, v. 137, n. 1, p. 84, doi. 10.1111/jbg.12456
By:
- Sanglard, Leticia P.;
- Schmitz‐Esser, Stephan;
- Gray, Kent A.;
- Linhares, Daniel C. L.;
- Yeoman, Carl J.;
- Dekkers, Jack C. M.;
- Niederwerder, Megan C.;
- Serão, Nick V. L.
Publication type:
Article
Vaginal biogenic amines: biomarkers of bacterial vaginosis or precursors to vaginal dysbiosis?
Published in:
Frontiers in Physiology, 2015, p. 1, doi. 10.3389/fphys.2015.00253
By:
- Nelson, Tiffanie M.;
- Borgogna, Joanna-Lynn C.;
- Brotman, Rebecca M.;
- Ravel, Jacques;
- Walk, Seth T.;
- Yeoman, Carl J.;
- Lewis, Amanda L.;
- Verstraelen, Hans
Publication type:
Article
Vaginal Biogenic Amines: Biomarkers of Bacterial Vaginosis or Precursors to Vaginal Dysbiosis?
Published in:
Frontiers in Physiology, 2015, p. 1
By:
- Nelson, Tiffanie M.;
- Borgogna, Joanna-Lynn C.;
- Brotman, Rebecca M.;
- Ravel, Jacques;
- Walk, Seth T.;
- Yeoman, Carl J.
Publication type:
Article
Feed Characteristics Alter Growth Efficiency of Cutthroat Trout.
Published in:
Journal of Fish & Wildlife Management, 2015, v. 6, n. 1, p. 83, doi. 10.3996/052014-JFWM-042
By:
- Ham, Brian R.;
- Myrick, Christopher A.;
- Barrows, Frederic T.;
- Yeoman, Carl J.;
- Duff, Glenn C.;
- Maskill, Mark G.;
- Sealey, Wendy M.
Publication type:
Article
Perceived Stress and Molecular Bacterial Vaginosis in the National Institutes of Health Longitudinal Study of Vaginal Flora.
Published in:
American Journal of Epidemiology, 2021, v. 190, n. 11, p. 2374, doi. 10.1093/aje/kwab147
By:
- Turpin, Rodman;
- Slopen, Natalie;
- Borgogna, Joanna-Lynn C;
- Yeoman, Carl J;
- He, Xin;
- Miller, Ryan S;
- Klebanoff, Mark A;
- Ravel, Jacques;
- Brotman, Rebecca M
Publication type:
Article
Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome.
Published in:
Environmental Microbiology, 2012, v. 14, n. 1, p. 207, doi. 10.1111/j.1462-2920.2011.02593.x
By:
- Berg Miller, Margret E.;
- Yeoman, Carl J.;
- Chia, Nicholas;
- Tringe, Susannah G.;
- Angly, Florent E.;
- Edwards, Robert A.;
- Flint, Harry J.;
- Lamed, Raphael;
- Bayer, Edward A.;
- White, Bryan A.
Publication type:
Article
Relationships Between Gastrointestinal Parasite Infections and the Fecal Microbiome in Free-Ranging Western Lowland Gorillas.
Published in:
Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.01202
By:
- Vlčková, Klára;
- Pafčo, Barbora;
- Petrželková, Klára J.;
- Modrý, David;
- Todd, Angelique;
- Yeoman, Carl J.;
- Torralba, Manolito;
- Wilson, Brenda A.;
- Stumpf, Rebecca M.;
- White, Bryan A.;
- Nelson, Karen E.;
- Leigh, Steven R.;
- Gomez, Andres
Publication type:
Article
Genome-resolved insights into a novel Spiroplasma symbiont of the Wheat Stem Sawfly (Cephus cinctus).
Published in:
PeerJ, 2019, p. 1, doi. 10.7717/peerj.7548
By:
- Yeoman, Carl J.;
- Brutscher, Laura M.;
- Esen, Özcan C.;
- Ibaoglu, Furkan;
- Fowler, Curtis;
- Eren, A. Murat;
- Wanner, Kevin;
- Weaver, David K.
Publication type:
Article
Subclinical mastitis in sheep: etiology and association with milk somatic cell count and ewe productivity in three research flocks in the Western United States.
Published in:
Translational Animal Science, 2019, v. 3, p. 1739, doi. 10.1093/tas/txz078
By:
- Knuth, Ryan M;
- Stewart, Whitney C;
- Taylor, J Bret;
- Yeoman, Carl J;
- Bisha, Bledar;
- Page, Chad M;
- Rowley, Chayse M;
- Lindsey, Brenna C;
- Emon, Megan L Van;
- Murphy, Thomas W
Publication type:
Article
Relationships among intramammary health, udder and teat characteristics, and productivity of extensively managed ewes.
Published in:
Journal of Animal Science, 2021, v. 99, n. 4, p. 1, doi. 10.1093/jas/skab059
By:
- Knuth, Ryan M;
- Stewart, Whitney C;
- Taylor, Joshua B;
- Bisha, Bledar;
- Yeoman, Carl J;
- Emon, Megan L Van;
- Murphy, Thomas W
Publication type:
Article
Zinc AA supplementation alters yearling ram rumen bacterial communities but zinc sulfate supplementation does not.
Published in:
Journal of Animal Science, 2019, v. 97, n. 2, p. 687, doi. 10.1093/jas/sky456
By:
- Ishaq, Suzanne L.;
- Page, Chad M.;
- Yeoman, Carl J.;
- Murphy, Thomas W.;
- Van Emon, Megan L.;
- Stewart, Whit C.
Publication type:
Article
Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling.
Published in:
Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00307
By:
- Piao, Hailan;
- Lachman, Medora;
- Malfatti, Stephanie;
- Sczyrba, Alexander;
- Knierim, Bernhard;
- Auer, Manfred;
- Tringe, Susannah G.;
- Mackie, Roderick I.;
- Yeoman, Carl J.;
- Hess, Matthias
Publication type:
Article
Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling.
Published in:
Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00307
By:
- Piao, Hailan;
- Lachman, Medora;
- Malfatti, Stephanie;
- Sczyrba, Alexander;
- Knierim, Bernhard;
- Auer, Manfred;
- Tringe, Susannah;
- Mackie, Roderick I.;
- Yeoman, Carl J.;
- Hess, Matthias
Publication type:
Article
Pelleted-hay alfalfa feed increases sheep wether weight gain and rumen bacterial richness over loose-hay alfalfa feed.
Published in:
PLoS ONE, 2019, p. 1, doi. 10.1371/journal.pone.0215797
By:
- Ishaq, Suzanne L.;
- Lachman, Medora M.;
- Wenner, Benjamin A.;
- Baeza, Amy;
- Butler, Molly;
- Gates, Emily;
- Olivo, Sarah;
- Geddes, Julie Buono;
- Hatfield, Patrick;
- Yeoman, Carl J.
Publication type:
Article
Polyphenol-Rich Aronia melanocarpa Fruit Beneficially Impact Cholesterol, Glucose, and Serum and Gut Metabolites: A Randomized Clinical Trial.
Published in:
Foods, 2024, v. 13, n. 17, p. 2768, doi. 10.3390/foods13172768
By:
- Chamberlin, Morgan L.;
- Peach, Jesse T.;
- Wilson, Stephanie M.G.;
- Miller, Zachary T.;
- Bothner, Brian;
- Walk, Seth T.;
- Yeoman, Carl J.;
- Miles, Mary P.
Publication type:
Article
Water system is a controlling variable modulating bacterial diversity of gastrointestinal tract and performance in rainbow trout.
Published in:
PLoS ONE, 2018, v. 13, n. 4, p. 1, doi. 10.1371/journal.pone.0195967
By:
- Betiku, Omolola C.;
- Yeoman, Carl J.;
- Gaylord, T. Gibson;
- Americus, Benjamin;
- Olivo, Sarah;
- Duff, Glenn C.;
- Sealey, Wendy M.
Publication type:
Article
Towards an Evolutionary Model of Animal-Associated Microbiomes.
Published in:
Entropy, 2011, v. 13, n. 3, p. 570, doi. 10.3390/e13030570
By:
- Yeoman, Carl J.;
- Chia, Nicholas;
- Yildirim, Suleyman;
- Miller, Margret E. Berg;
- Kent, Angela;
- Stumpf, Rebecca;
- Leigh, Steven R.;
- Nelson, Karen E.;
- White, Bryan A.;
- Wilson, Brenda A.
Publication type:
Article

Found: 41