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VCAT: an integrated variant function annotation tools.
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- Human Genetics, 2024, v. 143, n. 11, p. 1311, doi. 10.1007/s00439-024-02699-6
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- Article
Protein complex structure modeling by cross-modal alignment between cryo-EM maps and protein sequences.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-53116-5
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- Article
Deep learning driven biosynthetic pathways navigation for natural products with BioNavi-NP.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30970-9
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- Article
An Insight into Anti-Inflammatory Activities and Inflammation Related Diseases of Anthocyanins: A Review of Both In Vivo and In Vitro Investigations.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 20, p. 11076, doi. 10.3390/ijms222011076
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- Article
Bias-Exchange Metadynamics Simulation of Membrane Permeation of 20 Amino Acids.
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- International Journal of Molecular Sciences, 2018, v. 19, n. 3, p. 885, doi. 10.3390/ijms19030885
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- Article
Mendelian randomization suggests a potential causal effect of eosinophil count on influenza vaccination responsiveness.
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- Journal of Medical Virology, 2023, v. 95, n. 1, p. 1, doi. 10.1002/jmv.28394
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- Article
Genome-wide association and Mendelian randomization analysis provide insights into the shared genetic architecture between high-dimensional electrocardiographic features and ischemic heart disease.
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- Human Genetics, 2024, v. 143, n. 1, p. 49, doi. 10.1007/s00439-023-02614-5
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- Article
Systematic analysis to identify transcriptome-wide dysregulation of Alzheimer's disease in genes and isoforms.
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- Human Genetics, 2021, v. 140, n. 4, p. 609, doi. 10.1007/s00439-020-02230-7
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- Article
Prioritization of schizophrenia risk genes from GWAS results by integrating multi-omics data.
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- Translational Psychiatry, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41398-021-01294-x
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- Article
A survey of Type III restriction-modification systems reveals numerous, novel epigenetic regulators controlling phase-variable regulons; phasevarions.
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- Nucleic Acids Research, 2018, v. 46, n. 7, p. 3532, doi. 10.1093/nar/gky192
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- Article
EVLncRNAs: a manually curated database for long non-coding RNAs validated by low-throughput experiments.
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- Nucleic Acids Research, 2018, v. 46, n. D1, p. D100, doi. 10.1093/nar/gkx677
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- Article
Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets.
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- Nucleic Acids Research, 2011, v. 39, n. 8, p. 3017, doi. 10.1093/nar/gkq1266
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- Article
Trends in template/fragment-free protein structure prediction.
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- Theoretical Chemistry Accounts: Theory, Computation, & Modeling, 2011, v. 128, n. 1, p. 3, doi. 10.1007/s00214-010-0799-2
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- Article
Structure-aware protein–protein interaction site prediction using deep graph convolutional network.
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- Bioinformatics, 2022, v. 38, n. 1, p. 125, doi. 10.1093/bioinformatics/btab643
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- Article
Systems-level understanding of ethanol-induced stresses and adaptation in E. coli.
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- Scientific Reports, 2017, p. 44150, doi. 10.1038/srep44150
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- Article
Imputing missing RNA-sequencing data from DNA methylation by using a transfer learning–based neural network.
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- GigaScience, 2020, v. 9, n. 7, p. 1, doi. 10.1093/gigascience/giaa076
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- Article
Predicting DNA-Binding Proteins and Binding Residues by Complex Structure Prediction and Application to Human Proteome.
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- PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0096694
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- Article
Direct prediction of profiles of sequences compatible with a protein structure by neural networks with fragment-based local and energy-based nonlocal profiles.
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- Proteins, 2014, v. 82, n. 10, p. 2565, doi. 10.1002/prot.24620
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- Article
Prediction and validation of the unexplored RNA-binding protein atlas of the human proteome.
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- Proteins, 2014, v. 82, n. 4, p. 640, doi. 10.1002/prot.24441
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- Article
A new size-independent score for pairwise protein structure alignment and its application to structure classification and nucleic-acid binding prediction.
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- Proteins, 2012, v. 80, n. 8, p. 2080, doi. 10.1002/prot.24100
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- Article
Improving computational protein design by using structure-derived sequence profile.
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- Proteins, 2010, v. 78, n. 10, p. 2338, doi. 10.1002/prot.22746
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- Article
An all-atom knowledge-based energy function for protein-DNA threading, docking decoy discrimination, and prediction of transcription-factor binding profiles.
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- Proteins, 2009, v. 76, n. 3, p. 718, doi. 10.1002/prot.22384
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- Article
Specific interactions for ab initio folding of protein terminal regions with secondary structures.
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- Proteins, 2008, v. 72, n. 2, p. 793, doi. 10.1002/prot.21968
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- Article
Structural basis for SUMO-E2 interaction revealed by a complex model using docking approach in combination with NMR data.
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- Proteins, 2005, v. 61, n. 4, p. 1050, doi. 10.1002/prot.20695
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- Article
An uncertainty-based interpretable deep learning framework for predicting breast cancer outcome.
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- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05716-7
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- Article
Chemical components and bioactivity evaluation of extracts from pear (Pyrus Ussuriensis Maxim) fruit.
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- Journal of Food Biochemistry, 2018, v. 42, n. 5, p. N.PAG, doi. 10.1111/jfbc.12586
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- Article
regSNPs-splicing: a tool for prioritizing synonymous single-nucleotide substitution.
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- Human Genetics, 2017, v. 136, n. 9, p. 1279, doi. 10.1007/s00439-017-1783-x
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- Publication type:
- Article
Development of Chitosan-Based Films Incorporated with Chestnut Flower Essential Oil That Possess Good Anti-Ultraviolet Radiation and Antibacterial Effects for Banana Storage.
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- Coatings (2079-6412), 2024, v. 14, n. 5, p. 548, doi. 10.3390/coatings14050548
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- Article
Accurately Discriminating COVID-19 from Viral and Bacterial Pneumonia According to CT Images Via Deep Learning.
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- Interdisciplinary Sciences: Computational Life Sciences, 2021, v. 13, n. 2, p. 273, doi. 10.1007/s12539-021-00420-z
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- Article
Fuc-S—A New Ultrasonic Degraded Sulfated α-l-Fucooligosaccharide—Alleviates DSS-Inflicted Colitis through Reshaping Gut Microbiota and Modulating Host–Microbe Tryptophan Metabolism.
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- Marine Drugs, 2023, v. 21, n. 1, p. 16, doi. 10.3390/md21010016
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- Article
Genetic evidence for a causal relationship between type 2 diabetes and peripheral artery disease in both Europeans and East Asians.
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- BMC Medicine, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12916-022-02476-0
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- Article
Study on the Antifungal Activity of Gallic Acid and Its Azole Derivatives against Fusarium graminearum.
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- Molecules, 2024, v. 29, n. 9, p. 1996, doi. 10.3390/molecules29091996
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- Article
Effect of Chestnut (Castanea Mollissima Blume) Bur Polyphenol Extract on Shigella dysenteriae : Antibacterial Activity and the Mechanism.
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- Molecules, 2023, v. 28, n. 19, p. 6990, doi. 10.3390/molecules28196990
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- Article
Effect of Ultrasonic Irradiation on the Physicochemical and Structural Properties of Laminaria japonica Polysaccharides and Their Performance in Biological Activities.
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- Molecules, 2023, v. 28, n. 1, p. 8, doi. 10.3390/molecules28010008
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- Article
A Potential Role of Plant/Macrofungi/Algae-Derived Non-Starch Polysaccharide in Colitis Curing: Review of Possible Mechanisms of Action.
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- Molecules, 2022, v. 27, n. 19, p. 6467, doi. 10.3390/molecules27196467
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- Article
Optimization Extraction and Antioxidant Activity of Crude Polysaccharide from Chestnut Mushroom (Agrocybe aegerita) by Accelerated Solvent Extraction Combined with Response Surface Methodology (ASE-RSM).
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- Molecules, 2022, v. 27, n. 8, p. N.PAG, doi. 10.3390/molecules27082380
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- Article
Cross‐Modal Graph Contrastive Learning with Cellular Images.
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- Advanced Science, 2024, v. 11, n. 32, p. 1, doi. 10.1002/advs.202404845
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- Article
Genome-scale annotation of protein binding sites via language model and geometric deep learning.
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- eLife, 2024, p. 1, doi. 10.7554/eLife.93695
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- Article
An Adaptive Transfer-Learning-Based Deep Cox Neural Network for Hepatocellular Carcinoma Prognosis Prediction.
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- Frontiers in Oncology, 2021, v. 11, p. 1, doi. 10.3389/fonc.2021.692774
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- Article
Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted contact map.
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- Journal of Cheminformatics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13321-021-00488-1
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- Article
DLIGAND2: an improved knowledge-based energy function for protein–ligand interactions using the distance-scaled, finite, ideal-gas reference state.
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- Journal of Cheminformatics, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13321-019-0373-4
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- Article
QBMG: quasi-biogenic molecule generator with deep recurrent neural network.
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- Journal of Cheminformatics, 2019, v. 11, n. 1, p. 1, doi. 10.1186/s13321-019-0328-9
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- Article
Moraxella catarrhalis phase-variable loci show differences in expression during conditions relevant to disease.
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- PLoS ONE, 2020, v. 15, n. 6, p. 1, doi. 10.1371/journal.pone.0234306
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- Article
Natural protein sequences are more intrinsically disordered than random sequences.
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- Cellular & Molecular Life Sciences, 2016, v. 73, n. 15, p. 2949, doi. 10.1007/s00018-016-2138-9
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- Article
Identification of Putative Causal Relationships Between Type 2 Diabetes and Blood-Based Biomarkers in East Asians by Mendelian Randomization.
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- American Journal of Epidemiology, 2022, v. 191, n. 11, p. 1867, doi. 10.1093/aje/kwac118
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- Article
Self-derived structure-disrupting peptides targeting methionine aminopeptidase in pathogenic bacteria: a new strategy to generate antimicrobial peptides.
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- FASEB Journal, 2019, v. 33, n. 2, p. 2095, doi. 10.1096/fj.201700613RR
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- Article
Tri©DB: an integrated platform of knowledgebase and reporting system for cancer precision medicine.
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- Journal of Translational Medicine, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12967-023-04773-5
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- Article
A narrative review on conformational structure characterization of natural polysaccharides.
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- Food Frontiers, 2022, v. 3, n. 4, p. 631, doi. 10.1002/fft2.150
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- Article
Imputing spatial transcriptomics through gene network constructed from protein language model.
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- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06964-2
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- Article
Imputing spatial transcriptomics through gene network constructed from protein language model.
- Published in:
- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06964-2
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- Article