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Deficiency of macrophage PHACTR1 impairs efferocytosis and promotes atherosclerotic plaque necrosis.
Published in:
2021
By:
- Kasikara, Canan;
- Schilperoort, Maaike;
- Gerlach, Brennan;
- Chenyi Xue;
- Xiaobo Wang;
- Ze Zheng;
- Kuriakose, George;
- Dorweiler, Bernhard;
- Hanrui Zhang;
- Fredman, Gabrielle;
- Saleheen, Danish;
- Reilly, Muredach P.;
- Tabas, Ira;
- Gerlach, Brennan D;
- Xue, Chenyi;
- Wang, Xiaobo;
- Zheng, Ze;
- Zhang, Hanrui
Publication type:
journal article
A genome-wide CRISPR screen identifies WDFY3 as a regulator of macrophage efferocytosis.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35604-8
By:
- Shi, Jianting;
- Wu, Xun;
- Wang, Ziyi;
- Li, Fang;
- Meng, Yujiao;
- Moore, Rebecca M.;
- Cui, Jian;
- Xue, Chenyi;
- Croce, Katherine R.;
- Yurdagul Jr, Arif;
- Doench, John G.;
- Li, Wei;
- Zarbalis, Konstantinos S.;
- Tabas, Ira;
- Yamamoto, Ai;
- Zhang, Hanrui
Publication type:
Article
PennSeq: accurate isoform-specific gene expression quantification in RNA-Seq by modeling non-uniform read distribution.
Published in:
Nucleic Acids Research, 2014, v. 42, n. 3, p. e20, doi. 10.1093/nar/gkt1304
By:
- Hu, Yu;
- Liu, Yichuan;
- Mao, Xianyun;
- Jia, Cheng;
- Ferguson, Jane F.;
- Xue, Chenyi;
- Reilly, Muredach P.;
- Li, Hongzhe;
- Li, Mingyao
Publication type:
Article
Evaluating the Impact of Sequencing Depth on Transcriptome Profiling in Human Adipose.
Published in:
PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066883
By:
- Liu, Yichuan;
- Ferguson, Jane F.;
- Xue, Chenyi;
- Silverman, Ian M.;
- Gregory, Brian;
- Reilly, Muredach P.;
- Li, Mingyao
Publication type:
Article
Why Does the Giant Panda Eat Bamboo? A Comparative Analysis of Appetite-Reward-Related Genes among Mammals.
Published in:
PLoS ONE, 2011, v. 6, n. 7, p. 1, doi. 10.1371/journal.pone.0022602
By:
- Ke Jin;
- Chenyi Xue;
- Xiaoli Wu;
- Jinyi Qian;
- Yong Zhu;
- Zhen Yang;
- Yonezawa, Takahiro;
- Crabbe, M. James C.;
- Ying Cao;
- Hasegawa, Masami;
- Yang Zhong;
- Yufang Zheng
Publication type:
Article
ASEP: Gene-based detection of allele-specific expression cross individuals in a population by RNA sequencing.
Published in:
PLoS Genetics, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pgen.1008786
By:
- Fan, Jiaxin;
- Hu, Jian;
- Xue, Chenyi;
- Zhang, Hanrui;
- Susztak, Katalin;
- Reilly, Muredach P.;
- Xiao, Rui;
- Li, Mingyao
Publication type:
Article
Adipose transcriptomics reveals novel genes and lincRNAs modified by n‐3 PUFA supplementation and human‐evoked endotoxemia (383.1).
Published in:
FASEB Journal, 2014, v. 28, p. N.PAG, doi. 10.1096/fasebj.28.1_supplement.383.1
By:
- Ferguson, Jane;
- Xue, Chenyi;
- Ballantyne, Rachel;
- Gosai, Sager;
- Li, Mingyao;
- Reilly, Muredach
Publication type:
Article
NuSAP governs chromosome oscillation by facilitating the Kid-generated polar ejection force.
Published in:
Nature Communications, 2016, v. 7, n. 2, p. 10597, doi. 10.1038/ncomms10597
By:
- Li, Chenyu;
- Xue, Chenyi;
- Yang, Qiaoyun;
- Low, Boon Chuan;
- Liou, Yih-Cherng
Publication type:
Article
Interrogation of nonconserved human adipose lincRNAs identifies a regulatory role of linc-ADAL in adipocyte metabolism.
Published in:
Science Translational Medicine, 2018, v. 10, n. 446, p. 1, doi. 10.1126/scitranslmed.aar5987
By:
- Zhang, Xuan;
- Xue, Chenyi;
- Lin, Jennie;
- Ferguson, Jane F.;
- Weiner, Amber;
- Liu, Wen;
- Han, Yumiao;
- Hinkle, Christine;
- Li, Wenjun;
- Jiang, Hongfeng;
- Gosai, Sager;
- Hachet, Melanie;
- Garcia, Benjamin A.;
- Gregory, Brian D.;
- Soccio, Raymond E.;
- Hogenesch, John B.;
- Seale, Patrick;
- Li, Mingyao;
- Reilly, Muredach P.
Publication type:
Article
A Functional Synonymous Coding Variant in the IL1RN Gene Is Associated with Survival in Septic Shock.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2014, v. 190, n. 6, p. 656, doi. 10.1164/rccm.201403-0586OC
By:
- Meyer, Nuala J.;
- Ferguson, Jane F.;
- Rui Feng;
- Fan Wang;
- Parth N. Patel;
- Mingyao Li;
- Chenyi Xue;
- Liming Qu;
- Yichuan Liu;
- Boyd, John H.;
- Russell, James A.;
- Christie, Jason D.;
- Walley, Keith R.;
- Reilly, Muredach P.
Publication type:
Article
A functional synonymous coding variant in the IL1RN gene associates with survival in septic shock.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2014, v. 190, n. 6, p. E1, doi. 10.1164/rccm.201403-0586oc
By:
- Meyer, Nuala J.;
- Ferguson, Jane F.;
- Rui Feng;
- Fan Wang;
- Patel, Parth N.;
- Mingyao Li;
- Chenyi Xue;
- Liming Qu;
- Yichuan Liu;
- Boyd, John H.;
- Russell, James A.;
- Christie, Jason D.;
- Walley, Keith R.;
- Reilly, Muredach P.
Publication type:
Article
Deep RNA Sequencing Uncovers a Repertoire of Human Macrophage Long Intergenic Noncoding RNAs Modulated by Macrophage Activation and Associated With Cardiometabolic Diseases.
Published in:
2017
By:
- Zhang, Hanrui;
- Xue, Chenyi;
- Wang, Ying;
- Shi, Jianting;
- Zhang, Xuan;
- Li, Wenjun;
- Nunez, Sara;
- Foulkes, Andrea S.;
- Lin, Jennie;
- Hinkle, Christine C.;
- Yang, Wenli;
- Morrisey, Edward E.;
- Rader, Daniel J.;
- Li, Mingyao;
- Reilly, Muredach P.
Publication type:
journal article
Genome-wide interrogation reveals hundreds of long intergenic noncoding RNAs that associate with cardiometabolic traits.
Published in:
Human Molecular Genetics, 2016, v. 25, n. 14, p. 3125, doi. 10.1093/hmg/ddw154
By:
- Ballantyne, Rachel L.;
- Xuan Zhang;
- Nuñez, Sara;
- Xue, Chenyi;
- Wei Zhao;
- Reed, Eric;
- Salaheen, Danish;
- Foulkes, Andrea S.;
- Mingyao Li;
- Reilly, Muredach P.
Publication type:
Article
Integrative genomics identifies 7p11.2 as a novel locus for fever and clinical stress response in humans.
Published in:
Human Molecular Genetics, 2015, v. 24, n. 6, p. 1801, doi. 10.1093/hmg/ddu589
By:
- Ferguson, Jane F.;
- Meyer, Nuala J.;
- Qu, Liming;
- Xue, Chenyi;
- Liu, Yichuan;
- DerOhannessian, Stephanie L.;
- Rushefski, Melanie;
- Paschos, Georgios K.;
- Tang, Soonyew;
- Schadt, Eric E.;
- Li, Mingyao;
- Christie, Jason D.;
- Reilly, Muredach P.
Publication type:
Article
Thermal Stability, Mechanical Properties and Ceramization Mechanism of Epoxy Resin/Kaolin/Quartz Fiber Ceramifiable Composites.
Published in:
Polymers (20734360), 2022, v. 14, n. 16, p. 3372, doi. 10.3390/polym14163372
By:
- Xue, Chenyi;
- Qin, Yan;
- Fu, Huadong;
- Fan, Jiamin
Publication type:
Article
Expression of Calgranulin Genes S100A8, S100A9 and S100A12 Is Modulated by n-3 PUFA during Inflammation in Adipose Tissue and Mononuclear Cells.
Published in:
PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0169614
By:
- Shah, Rachana D.;
- Xue, Chenyi;
- Zhang, Hanrui;
- Tuteja, Sony;
- Li, Mingyao;
- Reilly, Muredach P.;
- Ferguson, Jane F.
Publication type:
Article
RACIAL DIFFERENCES IN MLH1 AND MSH2 MUTATION:: AN ANALYSIS OF YELLOW RACE AND WHITE RACE BASED ON THE INSIGHT DATABASE.
Published in:
Journal of Bioinformatics & Computational Biology, 2010, v. 8, p. 111, doi. 10.1142/S0219720010005154
By:
- WEI, WENQIAN;
- LIU, LEI;
- CHEN, JIAN;
- JIN, KE;
- JIANG, FAN;
- LIU, FANGQI;
- FAN, RONG;
- CHENG, ZHE;
- SHEN, MENG;
- XUE, CHENYI;
- CAI, SANJUN;
- XU, YE;
- NAN, PENG
Publication type:
Article

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