Found: 6

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  • Automated next-generation profiling of genomic alterations in human cancers.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30380-x
    By:
    • Keefer, Laurel A.;
    • White, James R.;
    • Wood, Derrick E.;
    • Gerding, Kelly M. R.;
    • Valkenburg, Kenneth C.;
    • Riley, David;
    • Gault, Christopher;
    • Papp, Eniko;
    • Vollmer, Christine M.;
    • Greer, Amy;
    • Hernandez, James;
    • McGregor III, Paul M.;
    • Zingone, Adriana;
    • Ryan, Bríd M.;
    • Deak, Kristen;
    • McCall, Shannon J.;
    • Datto, Michael B.;
    • Prescott, James L.;
    • Thompson, John F.;
    • Cerqueira, Gustavo C.
    Publication type:
    Article

  • A machine learning approach for somatic mutation discovery.

    Published in:
    Science Translational Medicine, 2018, v. 10, n. 457, p. 1, doi. 10.1126/scitranslmed.aar7939
    By:
    • Wood, Derrick E.;
    • White, James R.;
    • Georgiadis, Andrew;
    • Van Emburgh, Beth;
    • Parpart-Li, Sonya;
    • Mitchell, Jason;
    • Anagnostou, Valsamo;
    • Niknafs, Noushin;
    • Karchin, Rachel;
    • Papp, Eniko;
    • McCord, Christine;
    • LoVerso, Peter;
    • Riley, David;
    • Diaz, Luis A.;
    • Jones, Siân;
    • Sausen, Mark;
    • Velculescu, Victor E.;
    • Angiuoli, Samuel V.
    Publication type:
    Article

  • Kraken: ultrafast metagenomic sequence classification using exact alignments.

    Published in:
    Genome Biology, 2014, v. 15, n. 3, p. 1, doi. 10.1186/gb-2014-15-3-r46
    By:
    • Wood, Derrick E.;
    • Salzberg, Steven L.
    Publication type:
    Article

  • Thousands of missed genes found in bacterial genomes and their analysis with COMBREX.

    Published in:
    Biology Direct, 2012, v. 7, n. 1, p. 37, doi. 10.1186/1745-6150-7-37
    By:
    • Wood, Derrick E.;
    • Lin, Henry;
    • Levy-Moonshine, Ami;
    • Swaminathan, Rajiswari;
    • Yi-Chien Chang;
    • Anton, Brian P.;
    • Osmani, Lais;
    • Steffen, Martin;
    • Kasif, Simon;
    • Salzberg, Steven L.
    Publication type:
    Article

  • Improved metagenomic analysis with Kraken 2.

    Published in:
    Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1891-0
    By:
    • Wood, Derrick E.;
    • Lu, Jennifer;
    • Langmead, Ben
    Publication type:
    Article

  • Metagenome analysis using the Kraken software suite.

    Published in:
    Nature Protocols, 2022, v. 17, n. 12, p. 2815, doi. 10.1038/s41596-022-00738-y
    By:
    • Lu, Jennifer;
    • Rincon, Natalia;
    • Wood, Derrick E.;
    • Breitwieser, Florian P.;
    • Pockrandt, Christopher;
    • Langmead, Ben;
    • Salzberg, Steven L.;
    • Steinegger, Martin
    Publication type:
    Article