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ARTS: alignment of RNA tertiary structures.
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- Bioinformatics, 2005, v. 21, p. ii47, doi. 10.1093/bioinformatics/bti1108
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- Article
Structural similarity of genetically interacting proteins.
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- BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-69
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- Article
Funneling modulatory peptide design with generative models: Discovery and characterization of disruptors of calcineurin protein-protein interactions.
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- PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010874
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- Article
Design of Disruptors of the Hsp90–Cdc37 Interface.
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- Molecules, 2020, v. 25, n. 2, p. 360, doi. 10.3390/molecules25020360
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- Article
Protein-Protein Interaction Modeling and Inhibition: The TAU Bioinfo3D Perspective.
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- Israel Journal of Chemistry, 2013, v. 53, n. 3/4, p. 180, doi. 10.1002/ijch.201200095
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- Article
Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study.
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- Proteomics, 2023, v. 23, n. 17, p. 1, doi. 10.1002/pmic.202200323
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- Article
Shape complementarity at protein-protein interfaces.
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- Biopolymers, 1994, v. 34, n. 7, p. 933, doi. 10.1002/bip.360340711
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- Article
A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications.
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- Protein Science: A Publication of the Protein Society, 2004, v. 13, n. 4, p. 1043, doi. 10.1110/ps.03484604
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- Article
Multiple structural alignment by secondary structures: Algorithm and applications.
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- Protein Science: A Publication of the Protein Society, 2003, v. 12, n. 11, p. 2492, doi. 10.1110/ps.03200603
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- Article
SiteLight: Binding-site prediction using phage display libraries.
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- Protein Science: A Publication of the Protein Society, 2003, v. 12, n. 7, p. 1344, doi. 10.1110/ps.0237103
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- Article
Reducing the computational complexity of protein folding via fragment folding and assembly.
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- Protein Science: A Publication of the Protein Society, 2003, v. 12, n. 6, p. 1177, doi. 10.1110/ps.0232903
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- Article
Multiple diverse ligands binding at a single protein site: A matter of pre-existing populations.
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- Protein Science: A Publication of the Protein Society, 2002, v. 11, n. 2, p. 184, doi. 10.1110/ps.21302
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- Article
Detection of non-topological motifs in protein structures.
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- Protein Engineering, 1996, v. 9, n. 12, p. 1103, doi. 10.1093/protein/9.12.1103
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- Article
Studies of protein-protein interfaces: A statistical analysis of the hydrophobic effect.
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- Protein Science: A Publication of the Protein Society, 1997, v. 6, n. 1, p. 53, doi. 10.1002/pro.5560060106
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- Article
Pep–Whisperer: Inhibitory peptide design.
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- Proteins, 2022, v. 90, n. 11, p. 1886, doi. 10.1002/prot.26384
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- Article
SymmRef: A flexible refinement method for symmetric multimers.
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- Proteins, 2011, v. 79, n. 9, p. 2607, doi. 10.1002/prot.23082
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- Article
Protein structure prediction using a docking-based hierarchical folding scheme.
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- Proteins, 2011, v. 79, n. 6, p. 1759, doi. 10.1002/prot.22999
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- Article
Determining macromolecular assembly structures by molecular docking and fitting into an electron density map.
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- Proteins, 2010, v. 78, n. 15, p. 3205, doi. 10.1002/prot.22845
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- Article
An integrated suite of fast docking algorithms.
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- Proteins, 2010, v. 78, n. 15, p. 3197, doi. 10.1002/prot.22790
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- Article
FiberDock: Flexible induced-fit backbone refinement in molecular docking.
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- Proteins, 2010, v. 78, n. 6, p. 1503, doi. 10.1002/prot.22668
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- Article
Principles of flexible protein-protein docking.
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- Proteins, 2008, v. 73, n. 2, p. 271, doi. 10.1002/prot.22170
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- Article
Constructing templates for protein structure prediction by simulation of protein folding pathways.
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- Proteins, 2008, v. 73, n. 2, p. 380, doi. 10.1002/prot.22073
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- Article
MolAxis: Efficient and accurate identification of channels in macromolecules.
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- Proteins, 2008, v. 73, n. 1, p. 72, doi. 10.1002/prot.22052
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- Article
HingeProt: Automated prediction of hinges in protein structures.
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- Proteins, 2008, v. 70, n. 4, p. 1219, doi. 10.1002/prot.21613
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- Article
Automatic prediction of protein interactions with large scale motion.
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- Proteins, 2007, v. 69, n. 4, p. 764, doi. 10.1002/prot.21759
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- Article
FireDock: Fast interaction refinement in molecular docking.
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- Proteins, 2007, v. 69, n. 1, p. 139, doi. 10.1002/prot.21495
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- Article
Principles of nanostructure design with protein building blocks.
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- Proteins, 2007, v. 68, n. 1, p. 1, doi. 10.1002/prot.21413
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- Article
Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families.
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- Proteins, 2006, v. 63, n. 4, p. 832, doi. 10.1002/prot.20933
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- Article
Optimization of multiple-sequence alignment based on multiple-structure alignment.
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- Proteins, 2006, v. 62, n. 1, p. 209, doi. 10.1002/prot.20665
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- Article
Generation and analysis of a protein-protein interface data set with similar chemical and spatial patterns of interactions.
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- Proteins, 2005, v. 61, n. 1, p. 6, doi. 10.1002/prot.20580
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- Article
Geometry-based flexible and symmetric protein docking.
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- Proteins, 2005, v. 60, n. 2, p. 224, doi. 10.1002/prot.20562
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- Article
Approaching the CAPRI challenge with an efficient geometry-based docking.
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- Proteins, 2005, v. 60, n. 2, p. 217, doi. 10.1002/prot.20561
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- Article
Potential folding-function interrelationship in proteins.
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- Proteins, 2004, v. 56, n. 4, p. 635, doi. 10.1002/prot.20132
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- Article
A method for simultaneous alignment of multiple protein structures.
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- Proteins, 2004, v. 56, n. 1, p. 143, doi. 10.1002/prot.10628
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- Article
Taking geometry to its edge: Fast unbound rigid (and hinge-bent) docking (This article is a US Government work and, as such, is in the public domain in the United States of America.).
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- Proteins, 2003, v. 52, n. 1, p. 107, doi. 10.1002/prot.10397
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- Article
Conformational transitions in human translin enable nucleic acid binding.
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- Nucleic Acids Research, 2013, v. 41, n. 21, p. 9956, doi. 10.1093/nar/gkt765
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- Article
ParaDock: a flexible non-specific DNA—rigid protein docking algorithm.
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- Nucleic Acids Research, 2011, v. 39, n. 20, p. e135, doi. 10.1093/nar/gkr620
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- Article
MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W167, doi. 10.1093/nar/gkr490
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- Article
FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking.
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- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W457, doi. 10.1093/nar/gkq373
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- Article
Conservation and amyloid formation: A study of the gelsolin-like family (This article is a US Government work and, as such, is in the public domain in the United States of America.).
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- Proteins, 2003, v. 51, n. 2, p. 266, doi. 10.1002/prot.10359
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- Publication type:
- Article
Hierarchical protein folding pathways: A computational study of protein fragments (This article is a US Government work and, as such, is in the public domain in the United States of America.) The content of this publication does not necessarily reflect the view or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organization imply endorsement by the U.S. Government.)
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- Proteins, 2003, v. 51, n. 2, p. 203, doi. 10.1002/prot.10294
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- Article
Flexible protein alignment and hinge detection.
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- Proteins, 2002, v. 48, n. 2, p. 242, doi. 10.1002/prot.10100
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- Article
Principles of docking: An overview of search algorithms and a guide to scoring functions.
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- Proteins, 2002, v. 47, n. 4, p. 409, doi. 10.1002/prot.10115
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- Article
Automated multiple structure alignment and detection of a common substructural motif.
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- Proteins, 2001, v. 43, n. 3, p. 235, doi. 10.1002/prot.1034
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- Article
Conservation of polar residues as hot spots at protein interfaces.
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- Proteins, 2000, v. 39, n. 4, p. 331, doi. 10.1002/(SICI)1097-0134(20000601)39:4<331::AID-PROT60>3.0.CO;2-A
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- Publication type:
- Article
Examination of shape complementarity in docking of Unbound proteins.
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- Proteins, 1999, v. 36, n. 3, p. 307, doi. 10.1002/(SICI)1097-0134(19990815)36:3<307::AID-PROT5>3.0.CO;2-R
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- Publication type:
- Article
Flexible structural comparison allowing hinge-bending, swiveling motions.
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- Proteins, 1999, v. 34, n. 2, p. 232, doi. 10.1002/(SICI)1097-0134(19990201)34:2<232::AID-PROT9>3.0.CO;2-9
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- Publication type:
- Article
Flexible Docking Allowing Induced Fit in Proteins: Insights From an Open to Closed Conformational Isomers
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- Proteins, 1998, v. 32, n. 2, p. 159
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- Article
Molecular surface representations by sparse critical points.
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- Proteins, 1994, v. 18, n. 1, p. 94, doi. 10.1002/prot.340180111
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- Article
Surface motifs by a computer vision technique: Searches, detection, and implications for protein-ligand recognition.
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- Proteins, 1993, v. 16, n. 3, p. 278, doi. 10.1002/prot.340160306
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- Article