Found: 26
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Do Molecular Fingerprints Identify Diverse Active Drugs in Large-Scale Virtual Screening? (No).
- Published in:
- Pharmaceuticals (14248247), 2024, v. 17, n. 8, p. 992, doi. 10.3390/ph17080992
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- Article
Complete Nucleomorph Genome Sequence of the Nonphotosynthetic Alga Cryptomonas paramecium Reveals a Core Nucleomorph Gene Set.
- Published in:
- Genome Biology & Evolution, 2011, v. 3, p. 44, doi. 10.1093/gbe/evq082
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- Publication type:
- Article
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 2, doi. 10.1186/1471-2105-15-7
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- Article
A call for benchmarking transposable element annotation methods.
- Published in:
- Mobile DNA, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13100-015-0044-6
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- Publication type:
- Article
Framework of the Alu Subfamily Evolution in the Platyrrhine Three-Family Clade of Cebidae, Callithrichidae, and Aotidae.
- Published in:
- Genes, 2023, v. 14, n. 2, p. 249, doi. 10.3390/genes14020249
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- Article
DISCO: A deep learning ensemble for uncertainty-aware segmentation of acoustic signals.
- Published in:
- PLoS ONE, 2023, v. 18, n. 9, p. 1, doi. 10.1371/journal.pone.0288172
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- Publication type:
- Article
Mirage2's high-quality spliced protein-to-genome mappings produce accurate multiple-sequence alignments of isoforms.
- Published in:
- PLoS ONE, 2023, v. 17, n. 5, p. 1, doi. 10.1371/journal.pone.0285225
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- Article
VIBES: a workflow for annotating and visualizing viral sequences integrated into bacterial genomes.
- Published in:
- NAR Genomics & Bioinformatics, 2024, v. 6, n. 2, p. 1, doi. 10.1093/nargab/lqae030
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- Publication type:
- Article
SODA: a TypeScript/JavaScript library for visualizing biological sequence annotation.
- Published in:
- NAR Genomics & Bioinformatics, 2022, v. 4, n. 4, p. 1, doi. 10.1093/nargab/lqac077
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- Publication type:
- Article
Accuracy of multiple sequence alignment methods in the reconstruction of transposable element families.
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- NAR Genomics & Bioinformatics, 2022, v. 4, n. 2, p. 1, doi. 10.1093/nargab/lqac040
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- Publication type:
- Article
Drugsniffer: An Open Source Workflow for Virtually Screening Billions of Molecules for Binding Affinity to Protein Targets.
- Published in:
- Frontiers in Pharmacology, 2022, v. 13, p. 1, doi. 10.3389/fphar.2022.874746
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- Publication type:
- Article
The Dfam database of repetitive DNA families.
- Published in:
- Nucleic Acids Research, 2016, v. 44, p. D81, doi. 10.1093/nar/gkv1272
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- Publication type:
- Article
HMMER web server: 2015 update.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. W1, p. W30, doi. 10.1093/nar/gkv397
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- Publication type:
- Article
Dfam: a database of repetitive DNA based on profile hidden Markov models.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. D70, doi. 10.1093/nar/gks1265
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- Publication type:
- Article
nhmmer: DNA homology search with profile HMMs.
- Published in:
- Bioinformatics, 2013, v. 29, n. 19, p. 2487, doi. 10.1093/bioinformatics/btt403
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- Publication type:
- Article
Multiple alignment by aligning alignments.
- Published in:
- Bioinformatics, 2007, v. 23, n. 13, p. i559, doi. 10.1093/bioinformatics/btm226
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- Publication type:
- Article
Evaluating and improving cDNA sequence quality with cQC.
- Published in:
- Bioinformatics, 2005, v. 21, n. 24, p. 4414, doi. 10.1093/bioinformatics/bti709
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- Publication type:
- Article
TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation.
- Published in:
- 2021
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- Publication type:
- Letter
Transposable element subfamily annotation has a reproducibility problem.
- Published in:
- Mobile DNA, 2021, v. 12, n. 1, p. 1, doi. 10.1186/s13100-021-00232-4
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- Publication type:
- Article
The Dfam community resource of transposable element families, sequence models, and genome annotations.
- Published in:
- Mobile DNA, 2021, v. 12, n. 1, p. 1, doi. 10.1186/s13100-020-00230-y
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- Publication type:
- Article
An optimized FM-index library for nucleotide and amino acid search.
- Published in:
- Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00204-6
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- Publication type:
- Article
An optimized FM-index library for nucleotide and amino acid search.
- Published in:
- Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00204-6
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- Publication type:
- Article
Predicting metabolic modules in incomplete bacterial genomes with MetaPathPredict.
- Published in:
- eLife, 2024, p. 1, doi. 10.7554/eLife.85749
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- Publication type:
- Article
Pf Bacteriophage and Their Impact on Pseudomonas Virulence, Mammalian Immunity, and Chronic Infections.
- Published in:
- Frontiers in Immunology, 2020, p. 1, doi. 10.3389/fimmu.2020.00244
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- Publication type:
- Article
Transposable Element Orientation Bias in the Drosophila melanogaster Genome.
- Published in:
- Journal of Molecular Evolution, 2005, v. 61, n. 6, p. 733, doi. 10.1007/s00239-004-0243-0
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- Publication type:
- Article
An FPGA-based hardware accelerator supporting sensitive sequence homology filtering with profile hidden Markov models.
- Published in:
- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05879-3
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- Publication type:
- Article