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Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning.
Published in:
Nature Medicine, 2002, v. 8, n. 1, p. 68, doi. 10.1038/nm0102-68
By:
- Shipp, Margaret A.;
- Ross, Ken N.;
- Tamayo, Pablo;
- Weng, Andrew P.;
- Kutok, Jeffery L.;
- Aguiar, Ricardo C.T.;
- Gaasenbeek, Michelle;
- Angelo, Michael;
- Reich, Michael;
- Pinkus, Geraldine S.;
- Ray, Tane S.;
- Koval, Margaret A.;
- Last, Kim W.;
- Norton, Andrew;
- Lister, T. Andrew;
- Mesirov, Jill;
- Neuberg, Donna S.;
- Lander, Eric S.;
- Aster, Jon C.
Publication type:
Article
Phenothiazines induce PP2A-mediated apoptosis in T cell acute lymphoblastic leukemia.
Published in:
Journal of Clinical Investigation, 2014, v. 124, n. 2, p. 644, doi. 10.1172/JCI65093
By:
- Gutierrez, Alejandro;
- Li Pan;
- Groen, Richard W. J.;
- Baleydier, Frederic;
- Kentsis, Alex;
- Marineau, Jason;
- Grebliunaite, Ruta;
- Kozakewich, Elena;
- Reed, Casie;
- Pflumio, Francoise;
- Poglio, Sandrine;
- Uzan, Benjamin;
- Clemons, Paul;
- VerPlank, Lynn;
- An, Frank;
- Burbank, Jason;
- Norton, Stephanie;
- Tolliday, Nicola;
- Steen, Hanno;
- Weng, Andrew P.
Publication type:
Article
NOTCH1 promotes T cell leukemia-initiating activity by RUNX-mediated regulation of PKC-? and reactive oxygen species.
Published in:
Nature Medicine, 2012, v. 18, n. 11, p. 1693, doi. 10.1038/nm.2960
By:
- Giambra, Vincenzo;
- Jenkins, Christopher R;
- Wang, Hongfang;
- Lam, Sonya H;
- Shevchuk, Olena O;
- Nemirovsky, Oksana;
- Wai, Carol;
- Gusscott, Sam;
- Chiang, Mark Y;
- Aster, Jon C;
- Humphries, R Keith;
- Eaves, Connie;
- Weng, Andrew P
Publication type:
Article
Critical assessment of automated flow cytometry data analysis techniques.
Published in:
Nature Methods, 2013, v. 10, n. 3, p. 228, doi. 10.1038/nmeth.2365
By:
- Aghaeepour, Nima;
- Finak, Greg;
- Dougall, David;
- Khodabakhshi, Alireza Hadj;
- Mah, Phillip;
- Obermoser, Gerlinde;
- Spidlen, Josef;
- Taylor, Ian;
- Wuensch, Sherry A;
- Bramson, Jonathan;
- Eaves, Connie;
- Weng, Andrew P;
- III, Edgardo S Fortuno;
- Ho, Kevin;
- Kollmann, Tobias;
- Rogers, Wade;
- De Rosa, Stephen;
- Dalal, Bakul;
- Azad, Ariful;
- Pothen, Alex
Publication type:
Article
SpatialSort: a Bayesian model for clustering and cell population annotation of spatial proteomics data.
Published in:
Bioinformatics, 2023, v. 39, p. i131, doi. 10.1093/bioinformatics/btad242
By:
- Lee, Eric;
- Chern, Kevin;
- Nissen, Michael;
- Wang, Xuehai;
- Consortium, IMAXT;
- Huang, Chris;
- Gandhi, Anita K;
- Bouchard-Côté, Alexandre;
- Weng, Andrew P;
- Roth, Andrew
Publication type:
Article
Cell Fate Decisions in Malignant Hematopoiesis: Leukemia Phenotype Is Determined by Distinct Functional Domains of the MN1 Oncogene.
Published in:
PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0112671
By:
- Lai, Courteney K.;
- Moon, Yeonsook;
- Kuchenbauer, Florian;
- Starzcynowski, Daniel T.;
- Argiropoulos, Bob;
- Yung, Eric;
- Beer, Philip;
- Schwarzer, Adrian;
- Sharma, Amit;
- Park, Gyeongsin;
- Leung, Malina;
- Lin, Grace;
- Vollett, Sarah;
- Fung, Stephen;
- Eaves, Connie J.;
- Karsan, Aly;
- Weng, Andrew P.;
- Humphries, R. Keith;
- Heuser, Michael
Publication type:
Article
Occurrence of T‐cell and NK‐cell subsets with less well‐recognized phenotypes in peripheral blood submitted for routine flow cytometry analysis.
Published in:
Cytometry. Part B, 2021, v. 100, n. 2, p. 235, doi. 10.1002/cyto.b.21876
By:
- Hill, Ainsleigh J.;
- Zhang, Chaoran;
- Kusakabe, Manabu;
- Gowing, Kevin;
- Wang, Xuehai;
- Brinkman, Ryan R.;
- Weng, Andrew P.;
- Craig, Jeffrey W.
Publication type:
Article
CD80 (B7.1) is expressed on both malignant B cells and nonmalignant stromal cells in non-Hodgkin lymphoma.
Published in:
Cytometry. Part B, 2012, v. 82B, n. 2, p. 112, doi. 10.1002/cyto.b.20631
By:
- Dakappagari, Naveen;
- Ho, Steffan N.;
- Gascoyne, Randy D.;
- Ranuio, Julie;
- Weng, Andrew P.;
- Tangri, Shabnam
Publication type:
Article
B Cells With High Side Scatter Parameter by Flow Cytometry Correlate With Inferior Survival in Diffuse Large B-Cell Lymphoma.
Published in:
American Journal of Clinical Pathology, 2012, v. 137, n. 5, p. 805, doi. 10.1309/AJCPGR8BG4JDVOWR
By:
- Bashashati, Ali;
- Johnson, Nathalie A.;
- Khodabakhshi, Alireza Hadj;
- Whiteside, Matthew D.;
- Zare, Habil;
- Scott, David W.;
- Lo, Kenneth;
- Gottardo, Raphael;
- Brinkman, Fiona S.L.;
- Connors, Joseph M.;
- Slack, Graham W.;
- Gascoyne, Randy D.;
- Weng, Andrew P.;
- Brinkman, Ryan R.
Publication type:
Article
Automated Analysis of Multidimensional Flow Cytometry Data Improves Diagnostic Accuracy Between Mantle Cell Lymphoma and Small Lymphocytic Lymphoma.
Published in:
American Journal of Clinical Pathology, 2012, v. 137, n. 1, p. 75, doi. 10.1309/AJCPMMLQ67YOMGEW
By:
- Zare, Habil;
- Bashashati, Ali;
- Kridel, Robert;
- Aghaeepour, Nima;
- Haffari, Gholamreza;
- Connors, Joseph M.;
- Gascoyne, Randy D.;
- Gupta, Arvind;
- Brinkman, Ryan R.;
- Weng, Andrew P.
Publication type:
Article
Fanconi-BRCA pathway mutations in childhood T-cell acute lymphoblastic leukemia.
Published in:
PLoS ONE, 2019, v. 14, n. 11, p. 1, doi. 10.1371/journal.pone.0221288
By:
- Pouliot, Gayle P.;
- Degar, James;
- Hinze, Laura;
- Kochupurakkal, Bose;
- Vo, Chau D.;
- Burns, Melissa A.;
- Moreau, Lisa;
- Ganesa, Chirag;
- Roderick, Justine;
- Peirs, Sofie;
- Menten, Bjorn;
- Loh, Mignon L.;
- Hunger, Stephen P.;
- Silverman, Lewis B.;
- Harris, Marian H.;
- Stevenson, Kristen E.;
- Weinstock, David M.;
- Weng, Andrew P.;
- Van Vlierberghe, Pieter;
- D'Andrea, Alan D.
Publication type:
Article
IGF1R Derived PI3K/AKT Signaling Maintains Growth in a Subset of Human T-Cell Acute Lymphoblastic Leukemias.
Published in:
PLoS ONE, 2016, v. 11, n. 8, p. 1, doi. 10.1371/journal.pone.0161158
By:
- Gusscott, Samuel;
- Jenkins, Catherine E.;
- Lam, Sonya H.;
- Giambra, Vincenzo;
- Pollak, Michael;
- Weng, Andrew P.
Publication type:
Article
Targeting transcription regulation in cancer with a covalent CDK7 inhibitor.
Published in:
Nature, 2014, v. 511, n. 7511, p. 616, doi. 10.1038/nature13393
By:
- Kwiatkowski, Nicholas;
- Zhang, Tinghu;
- Rahl, Peter B.;
- Abraham, Brian J.;
- Reddy, Jessica;
- Ficarro, Scott B.;
- Dastur, Anahita;
- Amzallag, Arnaud;
- Ramaswamy, Sridhar;
- Tesar, Bethany;
- Jenkins, Catherine E.;
- Hannett, Nancy M.;
- McMillin, Douglas;
- Sanda, Takaomi;
- Sim, Taebo;
- Kim, Nam Doo;
- Look, Thomas;
- Mitsiades, Constantine S.;
- Weng, Andrew P.;
- Brown, Jennifer R.
Publication type:
Article
CRIS: complete reconstruction of immunoglobulin V-D-J sequences from RNA-seq data.
Published in:
Bioinformatics Advances, 2021, v. 1, n. 1, p. 1, doi. 10.1093/bioadv/vbab021
By:
- Islam, Rashedul;
- Bilenky, Misha;
- Weng, Andrew P.;
- Connors, Joseph M.;
- Hirst, Martin
Publication type:
Article
Defining the clonality of peripheral T cell lymphomas using RNA-seq.
Published in:
Bioinformatics, 2017, v. 33, n. 8, p. 1111, doi. 10.1093/bioinformatics/btw810
By:
- Brown, Scott D.;
- Hapgood, Greg;
- Steidl, Christian;
- Weng, Andrew P.;
- Savage, Kerry J.;
- Holt, Robert A.
Publication type:
Article

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