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The Urinary Microbiome of Older Adults Residing in a Nursing Home Varies With Duration of Residence and Shows Increases in Potential Pathogens.
Published in:
2022
By:
- Bradley, Evan S;
- Schell, Brent;
- Ward, Doyle V;
- Bucci, Vanni;
- Zeamer, Abigail;
- Haran, John P
Publication type:
journal article
The Nursing Home Older Adult Gut Microbiome Composition Shows Time-dependent Dysbiosis and Is Influenced by Medication Exposures, Age, Environment, and Frailty.
Published in:
2021
By:
- Haran, John P;
- Zeamer, Abigail;
- Ward, Doyle V;
- Dutta, Protiva;
- Bucci, Vanni;
- McCormick, Beth A
Publication type:
journal article
2602. Genetic Basis of Staphylococcus aureus Virulence.
Published in:
Open Forum Infectious Diseases, 2019, v. 6, p. S904, doi. 10.1093/ofid/ofz360.2280
By:
- Adams, Edward W;
- Ward, Doyle V;
- Barton, Bruce A;
- Ellison, Richard T;
- Olaitan, Oladapo
Publication type:
Article
Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut.
Published in:
Scientific Reports, 2015, p. 15782, doi. 10.1038/srep15782
By:
- Milani, Christian;
- Andrea Lugli, Gabriele;
- Duranti, Sabrina;
- Turroni, Francesca;
- Mancabelli, Leonardo;
- Ferrario, Chiara;
- Mangifesta, Marta;
- Hevia, Arancha;
- Viappiani, Alice;
- Scholz, Matthias;
- Arioli, Stefania;
- Sanchez, Borja;
- Lane, Jonathan;
- Ward, Doyle V.;
- Hickey, Rita;
- Mora, Diego;
- Segata, Nicola;
- Margolles, Abelardo;
- van Sinderen, Douwe;
- Ventura, Marco
Publication type:
Article
Oropharyngeal microbiome profiled at admission is predictive of the need for respiratory support among COVID-19 patients.
Published in:
Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.1009440
By:
- Bradley, Evan S.;
- Zeamer, Abigail L.;
- Bucci, Vanni;
- Cincotta, Lindsey;
- Salive, Marie-Claire;
- Dutta, Protiva;
- Mutaawe, Shafik;
- Anya, Otuwe;
- Tocci, Christopher;
- Moormann, Ann;
- Ward, Doyle V.;
- McCormick, Beth A.;
- Haran, John P.
Publication type:
Article
Center Variation in Intestinal Microbiota Prior to Late-Onset Sepsis in Preterm Infants.
Published in:
PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0130604
By:
- Taft, Diana H.;
- Ambalavanan, Namasivayam;
- Schibler, Kurt R.;
- Yu, Zhuoteng;
- Newburg, David S.;
- Deshmukh, Hitesh;
- Ward, Doyle V.;
- Morrow, Ardythe L.
Publication type:
Article
16S rRNA Gene Survey of Microbial Communities in Winogradsky Columns.
Published in:
PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0104134
By:
- Rundell, Ethan A.;
- Banta, Lois M.;
- Ward, Doyle V.;
- Watts, Corey D.;
- Birren, Bruce;
- Esteban, David J.
Publication type:
Article
Standardized Metadata for Human Pathogen/Vector Genomic Sequences.
Published in:
PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0099979
By:
- Dugan, Vivien G.;
- Emrich, Scott J.;
- Giraldo-Calderón, Gloria I.;
- Harb, Omar S.;
- Newman, Ruchi M.;
- Pickett, Brett E.;
- Schriml, Lynn M.;
- Stockwell, Timothy B.;
- Stoeckert Jr, Christian J.;
- Sullivan, Dan E.;
- Singh, Indresh;
- Ward, Doyle V.;
- Yao, Alison;
- Zheng, Jie;
- Barrett, Tanya;
- Birren, Bruce;
- Brinkac, Lauren;
- Bruno, Vincent M.;
- Caler, Elizabet;
- Chapman, Sinéad
Publication type:
Article
The Success of Acinetobacter Species; Genetic, Metabolic and Virulence Attributes.
Published in:
PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0046984
By:
- Peleg, Anton Y.;
- de Breij, Anna;
- Adams, Mark D.;
- Cerqueira, Gustavo M.;
- Mocali, Stefano;
- Galardini, Marco;
- Nibbering, Peter H.;
- Earl, Ashlee M.;
- Ward, Doyle V.;
- Paterson, David L.;
- Seifert, Harald;
- Dijkshoorn, Lenie
Publication type:
Article
Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease.
Published in:
PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0039242
By:
- Papa, Eliseo;
- Docktor, Michael;
- Smillie, Christopher;
- Weber, Sarah;
- Preheim, Sarah P.;
- Gevers, Dirk;
- Giannoukos, Georgia;
- Ciulla, Dawn;
- Tabbaa, Diana;
- Ingram, Jay;
- Schauer, David B.;
- Ward, Doyle V.;
- Korzenik, Joshua R.;
- Xavier, Ramnik J.;
- Bousvaros, Athos;
- Alm, Eric J.
Publication type:
Article
Whole Genome Characterization of the Mechanisms of Daptomycin Resistance in Clinical and Laboratory Derived Isolates of Staphylococcus aureus.
Published in:
PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0028316
By:
- Peleg, Anton Y.;
- Miyakis, Spiros;
- Ward, Doyle V.;
- Earl, Ashlee M.;
- Rubio, Aileen;
- Cameron, David R.;
- Pillai, Satish;
- Moellering, Jr., Robert C.;
- Eliopoulos, George M.
Publication type:
Article
Serine/Threonine Phosphatase Stp1 Contributes to Reduced Susceptibility to Vancomycin and Virulence in Staphylococcus aureus.
Published in:
Journal of Infectious Diseases, 2012, v. 205, n. 11, p. 1677, doi. 10.1093/infdis/jis252
By:
- Cameron, David R.;
- Ward, Doyle V.;
- Kostoulias, Xenia;
- Howden, Benjamin P.;
- Moellering, Robert C.;
- Eliopoulos, George M.;
- Peleg, Anton Y.
Publication type:
Article
Cognitive and Microbiome Impacts of Experimental Ancylostoma ceylanicum Hookworm Infections in Hamsters.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-44301-4
By:
- Pan, Samuel C.;
- Ward, Doyle V.;
- Yin, Yunqiang;
- Hu, Yan;
- Elfawal, Mostafa A.;
- Clark, Robert E.;
- Aroian, Raffi V.
Publication type:
Article
The microbiota of pregnant women with SARS-CoV-2 and their infants.
Published in:
Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01577-z
By:
- Leftwich, Heidi K.;
- Vargas-Robles, Daniela;
- Rojas-Correa, Mayra;
- Yap, Yan Rou;
- Bhattarai, Shakti;
- Ward, Doyle V.;
- Fujimori, Gavin;
- Forconi, Catherine S.;
- Yeboah, Tracy;
- Carter, Acara;
- Kastrinakis, Alyssa;
- Asirwatham, Alison M.;
- Bucci, Vanni;
- Moormann, Ann M.;
- Maldonado-Contreras, Ana
Publication type:
Article
Prophages of the genus B ifidobacterium as modulating agents of the infant gut microbiota.
Published in:
Environmental Microbiology, 2016, v. 18, n. 7, p. 2196, doi. 10.1111/1462-2920.13154
By:
- Lugli, Gabriele Andrea;
- Milani, Christian;
- Turroni, Francesca;
- Tremblay, Denise;
- Ferrario, Chiara;
- Mancabelli, Leonardo;
- Duranti, Sabrina;
- Ward, Doyle V.;
- Ossiprandi, Maria Cristina;
- Moineau, Sylvain;
- Sinderen, Douwe;
- Ventura, Marco
Publication type:
Article
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.
Published in:
Genome Biology, 2012, v. 13, n. 9, p. r79, doi. 10.1186/gb-2012-13-9-r79
By:
- Morgan, Xochitl C.;
- Tickle, Timothy L.;
- Sokol, Harry;
- Gevers, Dirk;
- Devaney, Kathryn L.;
- Ward, Doyle V.;
- Reyes, Joshua A.;
- Shah, Samir A.;
- LeLeiko, Neal;
- Snapper, Scott B.;
- Bousvaros, Athos;
- Korzenik, Joshua;
- Sands, Bruce E.;
- Xavier, Ramnik J.;
- Huttenhower, Curtis
Publication type:
Article
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes.
Published in:
Genome Biology, 2012, v. 13, n. 3, p. 1, doi. 10.1186/gb-2012-13-3-r23
By:
- Giannoukos, Georgia;
- Ciulla, Dawn M.;
- Huang, Katherine;
- Haas, Brian J.;
- Izard, Jacques;
- Levin, Joshua Z.;
- Livny, Jonathan;
- Earl, Ashlee M.;
- Gevers, Dirk;
- Ward, Doyle V.;
- Nusbaum, Chad;
- Birren1, Bruce W.;
- Gnirke1, Andreas
Publication type:
Article
Evolved bacterial resistance to the chemotherapy gemcitabine modulates its efficacy in co-cultured cancer cells.
Published in:
eLife, 2023, p. 1, doi. 10.7554/eLife.83140
By:
- Sayin, Serkan;
- Rosener, Brittany;
- Li, Carmen G.;
- Bao Ho;
- Ponomarova, Olga;
- Ward, Doyle V.;
- Walhout, Albertha J. M.;
- Mitchell, Amir
Publication type:
Article
Epidemiological and clinical features of Panton-Valentine Leukocidin positive Staphylococcus aureus bacteremia: A case-control study.
Published in:
PLoS ONE, 2022, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0265476
By:
- Qu, Ming Da;
- Kausar, Humera;
- Smith, Stephen;
- Lazar, Peter G.;
- Kroll-Desrosiers, Aimee R.;
- Hollins III, Carl;
- Barton, Bruce A.;
- Ward, Doyle V.;
- Ellison III, Richard T.
Publication type:
Article
COVID-19 Variant Surveillance and Social Determinants in Central Massachusetts: Development Study.
Published in:
JMIR Formative Research, 2022, v. 6, n. 6, p. 1, doi. 10.2196/37858
By:
- Qiming Shi;
- Herbert, Carly;
- Ward, Doyle V.;
- Simin, Karl;
- McCormick, Beth A.;
- Ellison III, Richard T.;
- Zai, Adrian H.
Publication type:
Article
Gut microbiota regulation of P-glycoprotein in the intestinal epithelium in maintenance of homeostasis.
Published in:
Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01137-3
By:
- Foley, Sage E.;
- Tuohy, Christine;
- Dunford, Merran;
- Grey, Michael J.;
- De Luca, Heidi;
- Cawley, Caitlin;
- Szabady, Rose L.;
- Maldonado-Contreras, Ana;
- Houghton, Jean Marie;
- Ward, Doyle V.;
- Mrsny, Randall J.;
- McCormick, Beth A.
Publication type:
Article
Intestinal organoids model human responses to infection by commensal and Shiga toxin producing Escherichia coli.
Published in:
PLoS ONE, 2017, v. 12, n. 6, p. 1, doi. 10.1371/journal.pone.0178966
By:
- Karve, Sayali S.;
- Pradhan, Suman;
- Ward, Doyle V.;
- Weiss, Alison A.
Publication type:
Article
Correction: Alcohol-related changes in the intestinal microbiome influence neutrophil infiltration, inflammation and steatosis in early alcoholic hepatitis in mice.
Published in:
2017
By:
- Lowe, Patrick P.;
- Gyongyosi, Benedek;
- Satishchandran, Abhishek;
- Iracheta-Vellve, Arvin;
- Ambade, Aditya;
- Cho, Yeonhee;
- Kodys, Karen;
- Catalano, Donna;
- Ward, Doyle V.;
- Szabo, Gyongyi
Publication type:
Correction Notice
Alcohol-related changes in the intestinal microbiome influence neutrophil infiltration, inflammation and steatosis in early alcoholic hepatitis in mice.
Published in:
PLoS ONE, 2017, v. 12, n. 3, p. 1, doi. 10.1371/journal.pone.0174544
By:
- Lowe, Patrick P.;
- Gyongyosi, Benedek;
- Satishchandran, Abhishek;
- Iracheta-Vellve, Arvin;
- Ambade, Aditya;
- Kodys, Karen;
- Catalano, Donna;
- Ward, Doyle V.;
- Szabo, Gyongyi
Publication type:
Article

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