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Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.
Published in:
Nucleic Acids Research, 2010, v. 38, n. 22, p. 8141, doi. 10.1093/nar/gkq729
By:
- Vitezic, Morana;
- Lassmann, Timo;
- Forrest, Alistair R. R.;
- Suzuki, Masanori;
- Tomaru, Yasuhiro;
- Kawai, Jun;
- Carninci, Piero;
- Suzuki, Harukazu;
- Hayashizaki, Yoshihide;
- Daub, Carsten O.
Publication type:
Article
Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.
Published in:
Nature Methods, 2010, v. 7, n. 7, p. 528, doi. 10.1038/nmeth.1470
By:
- Plessy, Charles;
- Bertin, Nicolas;
- Takahashi, Hazuki;
- Simone, Roberto;
- Salimullah, Md;
- Lassmann, Timo;
- Vitezic, Morana;
- Severin, Jessica;
- Olivarius, Signe;
- Lazarevic, Dejan;
- Hornig, Nadine;
- Orlando, Valerio;
- Bell, Ian;
- Hui Gao;
- Dumais, Jacqueline;
- Kapranov, Philipp;
- Huaien Wang;
- Davis, Carrie A.;
- Gingeras, Thomas R.;
- Jun Kawai
Publication type:
Article
Polygenic heterogeneity in antidepressant treatment and placebo response.
Published in:
Translational Psychiatry, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41398-022-02221-4
By:
- Nøhr, Anne Krogh;
- Forsingdal, Annika;
- Moltke, Ida;
- Howes, Oliver D.;
- Vitezic, Morana;
- Albrechtsen, Anders;
- Dalby, Maria
Publication type:
Article
Characterizing mood disorders in the AFFECT study: a large, longitudinal, and phenotypically rich genetic cohort in the US.
Published in:
Translational Psychiatry, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41398-022-01877-2
By:
- Dalby, Maria;
- Vitezic, Morana;
- Plath, Niels;
- Hammer-Helmich, Lene;
- Jiang, Yunxuan;
- Tian, Chao;
- Dhamija, Devika;
- Wilson, Catherine H.;
- Hinds, David;
- 23andMe Research Team;
- Aslibekyan, Stella;
- Auton, Adam;
- Babalola, Elizabeth;
- Bell, Robert K.;
- Bielenberg, Jessica;
- Bryc, Katarzyna;
- Bullis, Emily;
- Coker, Daniella;
- Partida, Gabriel Cuellar;
- Das, Sayantan
Publication type:
Article
On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase.
Published in:
Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw144
By:
- Ienasescu, Hans;
- Kang Li;
- Andersson, Robin;
- Vitezic, Morana;
- Rennie, Sarah;
- Yun Chen;
- Vitting-Seerup, Kristoffer;
- Lagoni, Emil;
- Boyd, Mette;
- Bornholdt, Jette;
- de Hoon, Michiel J. L.;
- Hideya Kawaji;
- Lassmann, Timo;
- Yoshihide Hayashizaki;
- Forrest, Alistair R. R.;
- Carninci, Piero;
- Sandelin, Albin
Publication type:
Article
Profiling transcription initiation in human aged brain using deep-CAGE.
Published in:
2011
By:
- Francescatto, Margherita;
- Pardo, Luba;
- Rizzu, Patrizia;
- Vitezic, Morana;
- Simón-Sánchez, Javier;
- Takahashi, Hazuki;
- Daub, Carsten;
- Carninci, Piero;
- Heutink, Peter
Publication type:
Abstract
Characterization of the human RFX transcription factor family by regulatory and target gene analysis.
Published in:
BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-4564-6
By:
- Sugiaman-Trapman, Debora;
- Vitezic, Morana;
- Jouhilahti, Eeva-Mari;
- Mathelier, Anthony;
- Lauter, Gilbert;
- Misra, Sougat;
- Daub, Carsten O.;
- Kere, Juha;
- Swoboda, Peter
Publication type:
Article
Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03766-z
By:
- Boyd, Mette;
- Thodberg, Malte;
- Vitezic, Morana;
- Bornholdt, Jette;
- Vitting-Seerup, Kristoffer;
- Yun Chen;
- Coskun, Mehmet;
- Yuan Li;
- Zhao Sheng Lo, Bobby;
- Klausen, Pia;
- Schweiger, Pawel Jan;
- Pedersen, Anders Gorm;
- Rapin, Nicolas;
- Skovgaard, Kerstin;
- Dahlgaard, Katja;
- Andersson, Robin;
- Terkelsen, Thilde Bagger;
- Lilje, Berit;
- Troelsen, Jesper Thorvald;
- Petersen, Andreas Munk
Publication type:
Article
CAGE-defined promoter regions of the genes implicated in Rett Syndrome.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 3494, doi. 10.1186/1471-2164-15-1177
By:
- Vitezic, Morana;
- Bertin, Nicolas;
- Andersson, Robin;
- Lipovich, Leonard;
- Kawaji, Hideya;
- Lassmann, Timo;
- Sandelin, Albin;
- Heutink, Peter;
- Goldowitz, Dan;
- Ha, Thomas;
- Peter Zhang;
- Patrizi, Annarita;
- Fagiolini, Michela;
- Forrest, Alistair R. R.;
- Carninci, Piero;
- Saxena, Alka
Publication type:
Article
RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE).
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-269
By:
- Ohmiya, Hiroko;
- Vitezic, Morana;
- Frith, Martin C.;
- Itoh, Masayoshi;
- Carninci, Piero;
- Forrest, Alistair R. R.;
- Hayashizaki, Yoshihide;
- Lassmann, Timo
Publication type:
Article
The molecular network of the dyslexia candidate gene DYX1C1 shows connection to neuronal migration genes and cytoskeletal proteins
Published in:
2012
By:
- Tammimies, Kristiina;
- Vitezic, Morana;
- Matsson, Hans;
- Le Guyader, Sylvie;
- Bürglin, Thomas R.;
- Öhman, Tiina;
- Strömblad, Staffan;
- Daub, Carsten O.;
- Nyman, Tuula A.;
- Kere, Juha;
- Tapia-Páez, Isabel
Publication type:
Abstract
Identification of TNF-α-Responsive Promoters and Enhancers in the Intestinal Epithelial Cell Model Caco-2.
Published in:
DNA Research, 2014, v. 21, n. 6, p. 569, doi. 10.1093/dnares/dsu022
By:
- Boyd, Mette;
- Coskun, Mehmet;
- Lilje, Berit;
- Andersson, Robin;
- Hoof, Ilka;
- Bornholdt, Jette;
- Dahlgaard, Katja;
- Olsen, Jørgen;
- Vitezic, Morana;
- Bjerrum, Jacob Tveiten;
- Seidelin, Jakob Benedict;
- Nielsen, Ole Haagen;
- Troelsen, Jesper Thorvald;
- Sandelin, Albin
Publication type:
Article

Found: 12