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Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth.
Published in:
Plant Biotechnology Journal, 2020, v. 18, n. 2, p. 553, doi. 10.1111/pbi.13223
By:
- Vercruysse, Jasmien;
- Van Bel, Michiel;
- Osuna‐Cruz, Cristina M.;
- Kulkarni, Shubhada R.;
- Storme, Véronique;
- Nelissen, Hilde;
- Gonzalez, Nathalie;
- Inzé, Dirk;
- Vandepoele, Klaas
Publication type:
Article
PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics.
Published in:
Nucleic Acids Research, 2018, v. 46, n. D1, p. D1190, doi. 10.1093/nar/gkx1002
By:
- Van Bel, Michiel;
- Diels, Tim;
- Vancaester, Emmelien;
- Kreft, Lukasz;
- Botzki, Alexander;
- Van de Peer, Yves;
- Coppens, Frederik;
- Vandepoele, Klaas
Publication type:
Article
PLAZA 3.0: an access point for plant comparative genomics.
Published in:
Nucleic Acids Research, 2015, v. 43, n. D1, p. D974, doi. 10.1093/nar/gku986
By:
- Proost, Sebastian;
- Van Bel, Michiel;
- Vaneechoutte, Dries;
- Van de Peer, Yves;
- Inzé, Dirk;
- Mueller-Roeber, Bernd;
- Vandepoele, Klaas
Publication type:
Article
The <italic>Physcomitrella patens</italic> chromosome‐scale assembly reveals moss genome structure and evolution.
Published in:
Plant Journal, 2018, v. 93, n. 3, p. 515, doi. 10.1111/tpj.13801
By:
- Lang, Daniel;
- Ullrich, Kristian K.;
- Murat, Florent;
- Fuchs, Jörg;
- Jenkins, Jerry;
- Haas, Fabian B.;
- Piednoel, Mathieu;
- Gundlach, Heidrun;
- Van Bel, Michiel;
- Meyberg, Rabea;
- Vives, Cristina;
- Morata, Jordi;
- Symeonidi, Aikaterini;
- Hiss, Manuel;
- Muchero, Wellington;
- Kamisugi, Yasuko;
- Saleh, Omar;
- Blanc, Guillaume;
- Decker, Eva L.;
- van Gessel, Nico
Publication type:
Article
Drought Tolerance Conferred to Sugarcane by Association with Gluconacetobacter diazotrophicus: A Transcriptomic View of Hormone Pathways.
Published in:
PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0114744
By:
- Vargas, Lívia;
- Santa Brígida, Ailton B.;
- Mota Filho, José P.;
- de Carvalho, Thais G.;
- Rojas, Cristian A.;
- Vaneechoutte, Dries;
- Van Bel, Michiel;
- Farrinelli, Laurent;
- Ferreira, Paulo C. G.;
- Vandepoele, Klaas;
- Hemerly, Adriana S.
Publication type:
Article
Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions.
Published in:
BMC Plant Biology, 2017, v. 17, p. 1, doi. 10.1186/s12870-017-1070-y
By:
- Schmidt, Martin;
- Van Bel, Michiel;
- Woloszynska, Magdalena;
- Slabbinck, Bram;
- Martens, Cindy;
- De Block, Marc;
- Coppens, Frederik;
- Van Lijsebettens, Mieke
Publication type:
Article
Reciprocally Retained Genes in the Angiosperm Lineage Show the Hallmarks of Dosage Balance Sensitivity.
Published in:
Plant Cell, 2017, v. 29, n. 11, p. 2766, doi. 10.1105/tpc.17.00313
By:
- Tasdighian, Setareh;
- Bel, Michiel Van;
- Li, Zhen;
- Peer, Yves Van de;
- Carretero-Paulet, Lorenzo;
- Maere, Steven
Publication type:
Article
It's Time for Some "Site"-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana.
Published in:
Plant Cell, 2016, v. 28, n. 1, p. 6, doi. 10.1105/tpc.15.00878
By:
- Walton, Alan;
- Stes, Elisabeth;
- Cybulski, Nicolas;
- Bel, Michiel Van;
- Iñigo, Sabrina;
- Durand, Astrid Nagels;
- Timmerman, Evy;
- Heyman, Jefri;
- Pauwels, Laurens;
- Veylder, Lieven De;
- Goossens, Alain;
- Smet, Ive De;
- Coppens, Frederik;
- Goormachtig, Sofie;
- Gevaert, Kris
Publication type:
Article
Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf.
Published in:
Plant Cell, 2015, v. 27, n. 6, p. 1605, doi. 10.1105/tpc.15.00269
By:
- Nelissen, Hilde;
- Eeckhout, Dominique;
- Demuynck, Kirin;
- Persiau, Geert;
- Walton, Alan;
- Bel, Michiel van;
- Vervoort, Marieke;
- Candaele, Jasper;
- Block, Jolien De;
- Aesaert, Stijn;
- Lijsebettens, Mieke Van;
- Goormachtig, Sofie;
- Vandepoele, Klaas;
- Leene, Jelle Van;
- Muszynski, Michael;
- Gevaert, Kris;
- Inzé, Dirk;
- Jaeger, Geert De
Publication type:
Article
PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants.
Published in:
Plant Cell, 2009, v. 21, n. 12, p. 3718, doi. 10.1105/tpc.109.071506
By:
- Proost, Sebastian;
- Bel, Michiel Van;
- Sterck, Lieven;
- Billiau, Kenny;
- Parys, Thomas Van;
- Peer, Yves Van de;
- Vandepoele, Klaas
Publication type:
Article
Northern light reviews – Application of orthodoxy and network biology to infer gene functions in non‐model plants.
Published in:
Physiologia Plantarum, 2024, v. 176, n. 4, p. 1, doi. 10.1111/ppl.14441
By:
- Vandepoele, Klaas;
- Thierens, Sander;
- Van Bel, Michiel
Publication type:
Article
Leaf growth – complex regulation of a seemingly simple process.
Published in:
Plant Journal, 2024, v. 117, n. 4, p. 1018, doi. 10.1111/tpj.16558
By:
- Schneider, Michele;
- Van Bel, Michiel;
- Inzé, Dirk;
- Baekelandt, Alexandra
Publication type:
Article
Proteome Profiling of Wheat Shoots from Different Cultivars.
Published in:
Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00332
By:
- Vu, Lam Dai;
- Verstraeten, Inge;
- Stes, Elisabeth;
- Van Bel, Michiel;
- Coppens, Frederik;
- Gevaert, Kris;
- De Smet, Ive
Publication type:
Article
pico- PLAZA, a genome database of microbial photosynthetic eukaryotes.
Published in:
Environmental Microbiology, 2013, v. 15, n. 8, p. 2147, doi. 10.1111/1462-2920.12174
By:
- Vandepoele, Klaas;
- Van Bel, Michiel;
- Richard, Guilhem;
- Van Landeghem, Sofie;
- Verhelst, Bram;
- Moreau, Hervé;
- Van de Peer, Yves;
- Grimsley, Nigel;
- Piganeau, Gwenael
Publication type:
Article
TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes.
Published in:
Genome Biology, 2013, v. 14, n. 12, p. 1, doi. 10.1186/gb-2013-14-12-r134
By:
- Van Bel, Michiel;
- Proost, Sebastian;
- Van Neste, Christophe;
- Deforce, Dieter;
- de Peer, Yves Van;
- Vandepoele, Klaas
Publication type:
Article
Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage.
Published in:
Genome Biology, 2012, v. 13, n. 8, p. 1, doi. 10.1186/gb-2012-13-8-r74
By:
- Moreau, Hervé;
- Verhelst, Bram;
- Couloux, Arnaud;
- Derelle, Evelyne;
- Rombauts, Stephane;
- Grimsley, Nigel;
- Bel, Michiel Van;
- Poulain, Julie;
- Katinka, Michael;
- Hohmann-Marriott, Martin F.;
- Piganeau, Gwenael;
- Rouzé, Pierre;
- Silva, Corinne Da;
- Wincker, Patrick;
- De Peer, Yves Van;
- Vandepoele, Klaas
Publication type:
Article
The Arabidopsis condensin CAP‐D subunits arrange interphase chromatin.
Published in:
New Phytologist, 2021, v. 230, n. 3, p. 972, doi. 10.1111/nph.17221
By:
- Municio, Celia;
- Antosz, Wojciech;
- Grasser, Klaus D.;
- Kornobis, Etienne;
- Van Bel, Michiel;
- Eguinoa, Ignacio;
- Coppens, Frederik;
- Bräutigam, Andrea;
- Lermontova, Inna;
- Bruckmann, Astrid;
- Zelkowska, Katarzyna;
- Houben, Andreas;
- Schubert, Veit
Publication type:
Article
Comparative co-expression analysis in plant biology.
Published in:
Plant, Cell & Environment, 2012, v. 35, n. 10, p. 1787, doi. 10.1111/j.1365-3040.2012.02517.x
By:
- MOVAHEDI, SARA;
- VAN BEL, MICHIEL;
- HEYNDRICKX, KEN S.;
- VANDEPOELE, KLAAS
Publication type:
Article
FunSiP: a modular and extensible classifier for the prediction of functional sites in DNA.
Published in:
Bioinformatics, 2008, v. 24, n. 13, p. 1532, doi. 10.1093/bioinformatics/btn225
By:
- Michiel Van Bel;
- Yvan Saeys;
- Yves Van de Peer
Publication type:
Article
Transcriptional chronology reveals conserved genes involved in pennate diatom sexual reproduction.
Published in:
Molecular Ecology, 2024, v. 33, n. 8, p. 1, doi. 10.1111/mec.17320
By:
- Audoor, Sien;
- Bilcke, Gust;
- Pargana, Katerina;
- Belišová, Darja;
- Thierens, Sander;
- Van Bel, Michiel;
- Sterck, Lieven;
- Rijsdijk, Nadine;
- Annunziata, Rossella;
- Ferrante, Maria Immacolata;
- Vandepoele, Klaas;
- Vyverman, Wim
Publication type:
Article
PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants.
Published in:
Nucleic Acids Research, 2022, v. 50, n. D1, p. D1468, doi. 10.1093/nar/gkab1024
By:
- Van Bel, Michiel;
- Silvestri, Francesca;
- Weitz, Eric M;
- Kreft, Lukasz;
- Botzki, Alexander;
- Coppens, Frederik;
- Vandepoele, Klaas
Publication type:
Article
A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants.
Published in:
Plant Physiology, 2016, v. 171, n. 4, p. 2586, doi. 10.1104/pp.16.00821
By:
- Van de Velde, Jan;
- Van Bel, Michiel;
- Vaneechoutte, Dries;
- Vandepoele, Klaas
Publication type:
Article
A Conserved Core of Programmed Cell Death Indicator Genes Discriminates Developmentally and Environmentally Induced Programmed Cell Death in Plants.
Published in:
Plant Physiology, 2015, v. 169, n. 4, p. 2684, doi. 10.1104/pp.15.00769
By:
- Olvera-Carrillo, Yadira;
- Van Bel, Michiel;
- Van Hautegem, Tom;
- Fendrych, Matyáš;
- Huysmans, Marlies;
- Simaskova, Maria;
- van Durme, Matthias;
- Buscaill, Pierre;
- Rivas, Susana;
- Coll, Nuria S.;
- Coppens, Frederik;
- Maere, Steven;
- Nowack, Moritz K.
Publication type:
Article
Dissecting Plant Genomes with the PLAZA Comparative Genomics Platform.
Published in:
Plant Physiology, 2012, v. 158, n. 2, p. 590, doi. 10.1104/pp.111.189514
By:
- Van Bel, Michiel;
- Movahedi, Sara;
- Scheerlinck, Christopher;
- de Peer, Yves Van;
- Vandepoele, Klaas;
- Proost, Sebastian;
- Wischnitzki, Elisabeth
Publication type:
Article
Comment on 'Hayai-Annotation Plants: an ultrafast and comprehensive functional gene annotation system in plants': the importance of taking the GO graph structure into account.
Published in:
Bioinformatics, 2020, v. 36, n. 22/23, p. 5558, doi. 10.1093/bioinformatics/btaa1052
By:
- Bel, Michiel Van;
- Vandepoele, Klaas
Publication type:
Article
PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization.
Published in:
Bioinformatics, 2017, v. 33, n. 18, p. 2946, doi. 10.1093/bioinformatics/btx324
By:
- Kreft, Łukasz;
- Botzki, Alexander;
- Coppens, Frederik;
- Vandepoele, Klaas;
- Van Bel, Michiel
Publication type:
Article
BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements.
Published in:
Bioinformatics, 2015, v. 31, n. 23, p. 3758, doi. 10.1093/bioinformatics/btv466
By:
- De Witte, Dieter;
- Van de Velde, Jan;
- Decap, Dries;
- Van Bel, Michiel;
- Audenaert, Pieter;
- Demeester, Piet;
- Dhoedt, Bart;
- Vandepoele, Klaas;
- Fostier, Jan
Publication type:
Article

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