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Coupling between Sequence-Mediated Nucleosome Organization and Genome Evolution.
- Published in:
- Genes, 2021, v. 13, n. 6, p. 851, doi. 10.3390/genes12060851
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- Article
Intasome architecture and chromatin density modulate retroviral integration into nucleosome.
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- Retrovirology, 2015, v. 12, n. 1, p. 1, doi. 10.1186/s12977-015-0145-9
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- Article
Replication Fork Polarity Gradients Revealed by Megabase-Sized U-Shaped Replication Timing Domains in Human Cell Lines.
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- PLoS Computational Biology, 2012, v. 8, n. 4, p. 1, doi. 10.1371/journal.pcbi.1002443
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- Article
Mechanics of the IL2RA Gene Activation Revealed by Modeling and Atomic Force Microscopy.
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- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0018811
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- Article
Wavelet Analysis of DNA Bending Profiles reveals Structural Constraints on the Evolution of Genomic Sequences.
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- Journal of Biological Physics, 2004, v. 30, n. 1, p. 33, doi. 10.1023/B:JOBP.0000016438.86794.8e
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- Article
Painters in chromatin: a unified quantitative framework to systematically characterize epigenome regulation and memory.
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- Nucleic Acids Research, 2022, v. 50, n. 16, p. 9083, doi. 10.1093/nar/gkac702
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- Article
Rouse model with transient intramolecular contacts on a timescale of seconds recapitulates folding and fluctuation of yeast chromosomes.
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- Nucleic Acids Research, 2019, v. 47, n. 12, p. 6195, doi. 10.1093/nar/gkz374
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- Article
Epigenomics in 3D: importance of long-range spreading and specific interactions in epigenomic maintenance.
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- Nucleic Acids Research, 2018, v. 46, n. 5, p. 2252, doi. 10.1093/nar/gky009
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- Article
IC-Finder: inferring robustly the hierarchical organization of chromatin folding.
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- Nucleic Acids Research, 2017, v. 45, n. 10, p. 1, doi. 10.1093/nar/gkx036
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- Article
Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains.
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- Nucleic Acids Research, 2014, v. 42, n. 15, p. 9553, doi. 10.1093/nar/gku698
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- Article
ThreaDNA: predicting DNA mechanics' contribution to sequence selectivity of proteins along whole genomes.
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- Bioinformatics, 2018, v. 34, n. 4, p. 609, doi. 10.1093/bioinformatics/btx634
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- Article
Open chromatin encoded in DNA sequence is the signature of ‘master’ replication origins in human cells.
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- Nucleic Acids Research, 2009, v. 37, n. 18, p. 6064, doi. 10.1093/nar/gkp631
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- Article
DNA physical properties determine nucleosome occupancy from yeast to fly.
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- Nucleic Acids Research, 2008, v. 36, n. 11, p. 3746, doi. 10.1093/nar/gkn262
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- Article
3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy.
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- Nucleic Acids Research, 2006, v. 34, n. 18, p. e125, doi. 10.1093/nar/gkl675
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- Article
Global chromatin conformation differences in the Drosophila dosage compensated chromosome X.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-13350-8
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- Article
DNA Physical Properties and Nucleosome Positions Are Major Determinants of HIV-1 Integrase Selectivity.
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- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0129427
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- Article
Functional Coupling between HIV-1 Integrase and the SWI/SNF Chromatin Remodeling Complex for Efficient in vitro Integration into Stable Nucleosomes.
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- PLoS Pathogens, 2011, v. 7, n. 2, p. 1, doi. 10.1371/journal.ppat.1001280
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- Article