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Decomposing protein networks into domain–domain interactions.
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- Bioinformatics, 2005, v. 21, p. ii220, doi. 10.1093/bioinformatics/bti1135
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- Article
Isoform-specific interactions of the von Hippel-Lindau tumor suppressor protein.
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- Scientific Reports, 2015, p. 12605, doi. 10.1038/srep12605
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- Article
A PDZ scaffolding/CaM‐mediated pathway in Cryptochrome signaling.
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- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 3, p. 1, doi. 10.1002/pro.4914
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Pipeline for transferring annotations between proteins beyond globular domains.
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- Protein Science: A Publication of the Protein Society, 2023, v. 32, n. 7, p. 1, doi. 10.1002/pro.4655
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- Article
Intrinsic protein disorder and conditional folding in AlphaFoldDB.
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- Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 11, p. 1, doi. 10.1002/pro.4466
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- Article
Exploration of alternative splicing events in ten different grapevine cultivars.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1922-5
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- Article
NeEMO: a method using residue interaction networks to improve prediction of protein stability upon mutation.
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- BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S4-S7
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- Article
RING 4.0: faster residue interaction networks with novel interaction types across over 35,000 different chemical structures.
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- Nucleic Acids Research, 2024, v. 52, n. W1, p. W306, doi. 10.1093/nar/gkae337
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- Article
PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins.
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- Nucleic Acids Research, 2024, v. 52, n. D1, p. D536, doi. 10.1093/nar/gkad947
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- Article
DisProt in 2024: improving function annotation of intrinsically disordered proteins.
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- Nucleic Acids Research, 2024, v. 52, n. D1, p. D434, doi. 10.1093/nar/gkad928
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- Article
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins.
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- Nucleic Acids Research, 2023, v. 51, n. W1, p. W62, doi. 10.1093/nar/gkad430
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- Article
FuzPred: a web server for the sequence-based prediction of the context-dependent binding modes of proteins.
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- Nucleic Acids Research, 2023, v. 51, n. W1, p. W198, doi. 10.1093/nar/gkad214
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- Article
MobiDB: 10 years of intrinsically disordered proteins.
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- Nucleic Acids Research, 2023, v. 51, n. D1, p. D438, doi. 10.1093/nar/gkac1065
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- Article
Calmodulin Enhances Cryptochrome Binding to INAD in Drosophila Photoreceptors.
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- Frontiers in Molecular Neuroscience, 2018, p. N.PAG, doi. 10.3389/fnmol.2018.00280
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- Article
Comparison of protein repeat classifications based on structure and sequence families.
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- Biochemical Society Transactions, 2015, v. 43, n. 5, p. 832, doi. 10.1042/BST20150079
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- Article
Structural Characterization of Hypoxia Inducible Factor α—Prolyl Hydroxylase Domain 2 Interaction through MD Simulations.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 5, p. 4710, doi. 10.3390/ijms24054710
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- Article
Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 12, p. 4496, doi. 10.3390/ijms21124496
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- Article
Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database.
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- BMC Bioinformatics, 2013, v. 14, n. Suppl 7, p. 1, doi. 10.1186/1471-2105-14-S7-S3
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- Article
FRASS: the web-server for RNA structuralcomparison.
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- BMC Bioinformatics, 2010, v. 11, p. 327, doi. 10.1186/1471-2105-11-327
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- Article
The role of the N‐terminal tail for the oligomerization, folding and stability of human frataxin.
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- FEBS Open Bio, 2013, v. 3, n. 1, p. 310, doi. 10.1016/j.fob.2013.07.004
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- Article
APICURON: a database to credit and acknowledge the work of biocurators.
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- Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab019
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- Article
Where differences resemble: sequence-feature analysis in curated databases of intrinsically disordered proteins.
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- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay127
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PhytoTypeDB: a database of plant protein inter-cultivar variability and function.
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- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay125
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- Article
Cardiomyopathy in patients with POMT1-related congenital and limb-girdle muscular dystrophy.
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- European Journal of Human Genetics, 2012, v. 20, n. 12, p. 1234, doi. 10.1038/ejhg.2012.71
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- Article
Large-scale analysis of intrinsic disorder flavors and associated functions in the protein sequence universe.
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- Protein Science: A Publication of the Protein Society, 2016, v. 25, n. 12, p. 2164, doi. 10.1002/pro.3041
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- Article
Disorder transitions and conformational diversity cooperatively modulate biological function in proteins.
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- Protein Science: A Publication of the Protein Society, 2016, v. 25, n. 6, p. 1138, doi. 10.1002/pro.2931
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- Article
Conformational diversity analysis reveals three functional mechanisms in proteins.
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- PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005398
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- Article
Exploring Manually Curated Annotations of Intrinsically Disordered Proteins with DisProt.
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- Current Protocols, 2022, v. 2, n. 7, p. 1, doi. 10.1002/cpz1.484
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- Article
Exploring Curated Conformational Ensembles of Intrinsically Disordered Proteins in the Protein Ensemble Database.
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- Current Protocols, 2021, v. 1, n. 7, p. 1, doi. 10.1002/cpz1.192
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Disentangling the complexity of low complexity proteins.
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- Briefings in Bioinformatics, 2020, v. 21, n. 2, p. 458, doi. 10.1093/bib/bbz007
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- Article
Correct machine learning on protein sequences: a peer-reviewing perspective.
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- Briefings in Bioinformatics, 2016, v. 17, n. 5, p. 831, doi. 10.1093/bib/bbv082
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- Article
RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics.
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- Bioinformatics, 2023, v. 39, n. 5, p. 1, doi. 10.1093/bioinformatics/btad260
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- Article
Mocafe: a comprehensive Python library for simulating cancer development with Phase Field Models.
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- Bioinformatics, 2022, v. 38, n. 18, p. 4440, doi. 10.1093/bioinformatics/btac521
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- Article
ProSeqViewer: an interactive, responsive and efficient TypeScript library for visualization of sequences and alignments in web applications.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1129, doi. 10.1093/bioinformatics/btab764
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- Article
MobiDB-lite 3.0: fast consensus annotation of intrinsic disorder flavors in proteins.
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- Bioinformatics, 2020, v. 36, n. 22/23, p. 5533, doi. 10.1093/bioinformatics/btaa1045
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- Article
The Feature-Viewer: a visualization tool for positional annotations on a sequence.
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- Bioinformatics, 2020, v. 36, n. 10, p. 3244, doi. 10.1093/bioinformatics/btaa055
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- Article
Design and Analysis of a Petri Net Model of the Von Hippel-Lindau (VHL) Tumor Suppressor Interaction Network.
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- PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0096986
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- Article
PANADA: Protein Association Network Annotation, Determination and Analysis.
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- PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0078383
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<i>2mit</i>, an Intronic Gene of <i>Drosophila melanogaster timeless2</i>, Is Involved in Behavioral Plasticity.
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- PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0076351
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- Article
A Computational Model of the LGI1 Protein Suggests a Common Binding Site for ADAM Proteins.
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- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0018142
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- Article
Novel interactions of the von Hippel-Lindau (pVHL) tumor suppressor with the CDKN1 family of cell cycle inhibitors.
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- Scientific Reports, 2017, p. 46562, doi. 10.1038/srep46562
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- Article
VHLdb: A database of von Hippel-Lindau protein interactors and mutations.
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- Scientific Reports, 2016, p. 31128, doi. 10.1038/srep31128
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- Article
Critical assessment of protein intrinsic disorder prediction (CAID) - Results of round 2.
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- Proteins, 2023, v. 91, n. 12, p. 1925, doi. 10.1002/prot.26582
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- Article
Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust.
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- Proteins, 2009, v. 77, n. S9, p. 173, doi. 10.1002/prot.22532
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- Article
QMEAN: A comprehensive scoring function for model quality assessment.
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- Proteins, 2008, v. 71, n. 1, p. 261, doi. 10.1002/prot.21715
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- Article
The E3 ubiquitin-protein ligase MDM2 is a novel interactor of the von Hippel–Lindau tumor suppressor.
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- Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-72683-3
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- Article
FuzDrop on AlphaFold: visualizing the sequence-dependent propensity of liquid–liquid phase separation and aggregation of proteins.
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- Nucleic Acids Research, 2022, v. 50, n. W1, p. W337, doi. 10.1093/nar/gkac386
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- Article
RING 3.0: fast generation of probabilistic residue interaction networks from structural ensembles.
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- Nucleic Acids Research, 2022, v. 50, n. W1, p. W651, doi. 10.1093/nar/gkac365
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- Article
FuzDB: a new phase in understanding fuzzy interactions.
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- Nucleic Acids Research, 2022, v. 50, n. D1, p. D509, doi. 10.1093/nar/gkab1060
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- Article
Pfam: The protein families database in 2021.
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- Nucleic Acids Research, 2021, v. 49, n. D1, p. D412, doi. 10.1093/nar/gkaa913
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- Article