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Diversity and structural‐functional insights of alpha‐solenoid proteins.
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- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 11, p. 1, doi. 10.1002/pro.5189
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- Article
High-Conductance Channel Formation in Yeast Mitochondria is Mediated by F-ATP Synthase e and g Subunits.
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- Cellular Physiology & Biochemistry (Karger AG), 2018, v. 50, n. 5, p. 1840, doi. 10.1159/000494864
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- Article
Structural Characterization of Hypoxia Inducible Factor α—Prolyl Hydroxylase Domain 2 Interaction through MD Simulations.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 5, p. 4710, doi. 10.3390/ijms24054710
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- Article
Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 12, p. 4496, doi. 10.3390/ijms21124496
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- Article
The Pfam protein families database in 2019.
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- Nucleic Acids Research, 2019, v. 47, n. D1, p. D427, doi. 10.1093/nar/gky995
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- Article
RepeatsDB-lite: a web server for unit annotation of tandem repeat proteins.
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- Nucleic Acids Research, 2018, v. 46, n. W1, p. W402, doi. 10.1093/nar/gky360
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- Article
SODA: prediction of protein solubility from disorder and aggregation propensity.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W236, doi. 10.1093/nar/gkx412
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- Article
RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures.
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- Nucleic Acids Research, 2017, v. 45, n. D1, p. D308, doi. 10.1093/nar/gkw1136
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- Article
The RING 2.0 web server for high quality residue interaction networks.
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- Nucleic Acids Research, 2016, v. 44, n. W1, p. W367, doi. 10.1093/nar/gkw315
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- Article
INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity.
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- Nucleic Acids Research, 2015, v. 43, n. W1, p. W134, doi. 10.1093/nar/gkv523
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- Article
CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W190, doi. 10.1093/nar/gkr411
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- Article
Calmodulin Enhances Cryptochrome Binding to INAD in Drosophila Photoreceptors.
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- Frontiers in Molecular Neuroscience, 2018, p. N.PAG, doi. 10.3389/fnmol.2018.00280
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- Article
RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics.
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- Bioinformatics, 2023, v. 39, n. 5, p. 1, doi. 10.1093/bioinformatics/btad260
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- Article
Mocafe: a comprehensive Python library for simulating cancer development with Phase Field Models.
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- Bioinformatics, 2022, v. 38, n. 18, p. 4440, doi. 10.1093/bioinformatics/btac521
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- Article
ProSeqViewer: an interactive, responsive and efficient TypeScript library for visualization of sequences and alignments in web applications.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1129, doi. 10.1093/bioinformatics/btab764
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- Article
Novel interactions of the von Hippel-Lindau (pVHL) tumor suppressor with the CDKN1 family of cell cycle inhibitors.
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- Scientific Reports, 2017, p. 46562, doi. 10.1038/srep46562
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- Article
VHLdb: A database of von Hippel-Lindau protein interactors and mutations.
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- Scientific Reports, 2016, p. 31128, doi. 10.1038/srep31128
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- Article
BOOGIE: Predicting Blood Groups from High Throughput Sequencing Data.
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- PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0124579
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Design and Analysis of a Petri Net Model of the Von Hippel-Lindau (VHL) Tumor Suppressor Interaction Network.
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- PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0096986
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- Article
PANADA: Protein Association Network Annotation, Determination and Analysis.
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- PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0078383
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- Article
<i>2mit</i>, an Intronic Gene of <i>Drosophila melanogaster timeless2</i>, Is Involved in Behavioral Plasticity.
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- PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0076351
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- Article
A Computational Model of the LGI1 Protein Suggests a Common Binding Site for ADAM Proteins.
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- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0018142
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Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust.
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- Proteins, 2009, v. 77, n. S9, p. 173, doi. 10.1002/prot.22532
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- Article
QMEAN: A comprehensive scoring function for model quality assessment.
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- Proteins, 2008, v. 71, n. 1, p. 261, doi. 10.1002/prot.21715
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- Article
Characterization of the pVHL Interactome in Human Testis Using High-Throughput Library Screening.
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- Cancers, 2022, v. 14, n. 4, p. 1009, doi. 10.3390/cancers14041009
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- Article
APICURON: a database to credit and acknowledge the work of biocurators.
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- Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab019
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- Article
Where differences resemble: sequence-feature analysis in curated databases of intrinsically disordered proteins.
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- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay127
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PhytoTypeDB: a database of plant protein inter-cultivar variability and function.
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- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay125
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- Article
Cardiomyopathy in patients with POMT1-related congenital and limb-girdle muscular dystrophy.
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- European Journal of Human Genetics, 2012, v. 20, n. 12, p. 1234, doi. 10.1038/ejhg.2012.71
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- Article
Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database.
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- BMC Bioinformatics, 2013, v. 14, n. Suppl 7, p. 1, doi. 10.1186/1471-2105-14-S7-S3
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- Article
FRASS: the web-server for RNA structuralcomparison.
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- BMC Bioinformatics, 2010, v. 11, p. 327, doi. 10.1186/1471-2105-11-327
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- Article
Insights into the molecular features of the von Hippel–Lindau-like protein.
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- Amino Acids, 2019, v. 51, n. 10-12, p. 1461, doi. 10.1007/s00726-019-02781-8
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- Article
Spritz: a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w164, doi. 10.1093/nar/gkl166
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- Article
In silico prediction of blood cholesterol levels from genotype data.
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- PLoS ONE, 2020, v. 15, n. 2, p. 1, doi. 10.1371/journal.pone.0227191
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- Article
Disentangling the complexity of low complexity proteins.
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- Briefings in Bioinformatics, 2020, v. 21, n. 2, p. 458, doi. 10.1093/bib/bbz007
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- Article
Correct machine learning on protein sequences: a peer-reviewing perspective.
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- Briefings in Bioinformatics, 2016, v. 17, n. 5, p. 831, doi. 10.1093/bib/bbv082
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- Article
Low density lipoprotein misfolding and amyloidogenesis.
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- FASEB Journal, 2008, v. 22, n. 7, p. 2350, doi. 10.1096/fj.07-097774
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- Article
Assessing predictors for new post translational modification sites: A case study on hydroxylation.
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- PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007967
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Databases for intrinsically disordered proteins.
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- Acta Crystallographica: Section D, Structural Biology, 2022, v. 78, n. 2, p. 144, doi. 10.1107/S2059798321012109
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- Article
The E3 ubiquitin-protein ligase MDM2 is a novel interactor of the von Hippel–Lindau tumor suppressor.
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- Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-72683-3
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- Article
Comparison of protein repeat classifications based on structure and sequence families.
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- Biochemical Society Transactions, 2015, v. 43, n. 5, p. 832, doi. 10.1042/BST20150079
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- Article
Conformational diversity analysis reveals three functional mechanisms in proteins.
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- PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005398
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- Article
Decomposing protein networks into domain–domain interactions.
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- Bioinformatics, 2005, v. 21, p. ii220, doi. 10.1093/bioinformatics/bti1135
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- Article
Isoform-specific interactions of the von Hippel-Lindau tumor suppressor protein.
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- Scientific Reports, 2015, p. 12605, doi. 10.1038/srep12605
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- Article
RING 4.0: faster residue interaction networks with novel interaction types across over 35,000 different chemical structures.
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- Nucleic Acids Research, 2024, v. 52, n. W1, p. W306, doi. 10.1093/nar/gkae337
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PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins.
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- Nucleic Acids Research, 2024, v. 52, n. D1, p. D536, doi. 10.1093/nar/gkad947
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DisProt in 2024: improving function annotation of intrinsically disordered proteins.
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- Nucleic Acids Research, 2024, v. 52, n. D1, p. D434, doi. 10.1093/nar/gkad928
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CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins.
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- Nucleic Acids Research, 2023, v. 51, n. W1, p. W62, doi. 10.1093/nar/gkad430
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- Article
FuzPred: a web server for the sequence-based prediction of the context-dependent binding modes of proteins.
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- Nucleic Acids Research, 2023, v. 51, n. W1, p. W198, doi. 10.1093/nar/gkad214
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- Article
MobiDB: 10 years of intrinsically disordered proteins.
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- Nucleic Acids Research, 2023, v. 51, n. D1, p. D438, doi. 10.1093/nar/gkac1065
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- Article