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Novel diversity of bacterial communities associated with bottlenose dolphin upper respiratory tracts.
Published in:
Environmental Microbiology Reports, 2009, v. 1, n. 6, p. 555, doi. 10.1111/j.1758-2229.2009.00080.x
By:
- Johnson, Wesley R.;
- Torralba, Manolito;
- Fair, Patricia A.;
- Bossart, Gregory D.;
- Nelson, Karen E.;
- Morris, Pamela J.
Publication type:
Article
Author Correction: Sampling from four geographically divergent young female populations demonstrates forensic geolocation potential in microbiomes.
Published in:
2022
By:
- Clarke, Thomas;
- Brinkac, Lauren;
- Greco, Chris;
- Alleyne, Angela T.;
- Carrasco, Patricio;
- Inostroza, Carolina;
- Tau, Tiiseto;
- Wisitrasameewong, Wichaya;
- Torralba, Manolito G.;
- Nelson, Karen;
- Singh, Harinder
Publication type:
Correction Notice
Sampling from four geographically divergent young female populations demonstrates forensic geolocation potential in microbiomes.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-21779-z
By:
- Clarke, Thomas;
- Brinkac, Lauren;
- Greco, Chris;
- Alleyne, Angela T.;
- Carrasco, Patricio;
- Inostroza, Carolina;
- Tau, Tiiseto;
- Wisitrasameewong, Wichaya;
- Torralba, Manolito G.;
- Nelson, Karen;
- Singh, Harinder
Publication type:
Article
Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 7, p. 1344, doi. 10.1038/ismej.2013.16
By:
- Amato, Katherine R;
- Yeoman, Carl J;
- Kent, Angela;
- Righini, Nicoletta;
- Carbonero, Franck;
- Estrada, Alejandro;
- Rex Gaskins, H;
- Stumpf, Rebecca M;
- Yildirim, Suleyman;
- Torralba, Manolito;
- Gillis, Marcus;
- Wilson, Brenda A;
- Nelson, Karen E;
- White, Bryan A;
- Leigh, Steven R
Publication type:
Article
Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 4, p. 639, doi. 10.1038/ismej.2010.162
By:
- Swanson, Kelly S;
- Dowd, Scot E;
- Suchodolski, Jan S;
- Middelbos, Ingmar S;
- Vester, Brittany M;
- Barry, Kathleen A;
- Nelson, Karen E;
- Torralba, Manolito;
- Henrissat, Bernard;
- Coutinho, Pedro M;
- Cann, Isaac KO;
- White, Bryan A;
- Fahey, George C
Publication type:
Article
Gut microbiome composition and metabolomic profiles of wild western lowland gorillas ( Gorilla gorilla gorilla) reflect host ecology.
Published in:
Molecular Ecology, 2015, v. 24, n. 10, p. 2551, doi. 10.1111/mec.13181
By:
- Gomez, Andres;
- Petrzelkova, Klara;
- Yeoman, Carl J.;
- Vlckova, Klara;
- Mrázek, Jakub;
- Koppova, Ingrid;
- Carbonero, Franck;
- Ulanov, Alexander;
- Modry, David;
- Todd, Angelique;
- Torralba, Manolito;
- Nelson, Karen E.;
- Gaskins, H. Rex;
- Wilson, Brenda;
- Stumpf, Rebecca M.;
- White, Bryan A.;
- Leigh, Steven R.
Publication type:
Article
A Multi-Omic Systems-Based Approach Reveals Metabolic Markers of Bacterial Vaginosis and Insight into the Disease.
Published in:
PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056111
By:
- Yeoman, Carl J.;
- Thomas, Susan M.;
- Miller, Margret E. Berg;
- Ulanov, Alexander V.;
- Torralba, Manolito;
- Lucas, Sarah;
- Gillis, Marcus;
- Cregger, Melissa;
- Gomez, Andres;
- Ho, Mengfei;
- Leigh, Steven R.;
- Stumpf, Rebecca;
- Creedon, Douglas J.;
- Smith, Michael A.;
- Weisbaum, Jon S.;
- Nelson, Karen E.;
- Wilson, Brenda A.;
- White, Bryan A.
Publication type:
Article
Next Generation Sequencing to Define Prokaryotic and Fungal Diversity in the Bovine Rumen.
Published in:
PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0048289
By:
- Fouts, Derrick E.;
- Szpakowski, Sebastian;
- Purushe, Janaki;
- Torralba, Manolito;
- Waterman, Richard C.;
- MacNeil, Michael D.;
- Alexander, Leeson J.;
- Nelson, Karen E.
Publication type:
Article
Characterization of the Fecal Microbiome from Non-Human Wild Primates Reveals Species Specific Microbial Communities.
Published in:
PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0013963
By:
- Yildirim, Suleyman;
- Yeoman, Carl J.;
- Sipos, Maksim;
- Torralba, Manolito;
- Wilson, Brenda A.;
- Goldberg, Tony L.;
- Stumpf, Rebecca M.;
- Leigh, Steven R.;
- White, Bryan A.;
- Nelson, Karen E.
Publication type:
Article
Comparative Genomics of Gardnerella vaginalis Strains Reveals Substantial Differences in Metabolic and Virulence Potential.
Published in:
PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012411
By:
- Yeoman, Carl J.;
- Yildirim, Suleyman;
- Thomas, Susan M.;
- Durkin, A. Scott;
- Torralba, Manolito;
- Sutton, Granger;
- Buhay, Christian J.;
- Ding, Yan;
- Dugan-Rocha, Shannon P.;
- Muzny, Donna M.;
- Xiang Qin;
- Gibbs, Richard A.;
- Leigh, Steven R.;
- Stumpf, Rebecca;
- White, Bryan A.;
- Highlander, Sarah K.;
- Nelson, Karen E.;
- Wilson, Brenda A.
Publication type:
Article
Gastrointestinal microbial populations can distinguish pediatric and adolescent Acute Lymphoblastic Leukemia (ALL) at the time of disease diagnosis.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2965-y
By:
- Rajagopala, Seesandra V.;
- Yooseph, Shibu;
- Harkins, Derek M.;
- Moncera, Kelvin J.;
- Zabokrtsky, Keri B.;
- Torralba, Manolito G.;
- Tovchigrechko, Andrey;
- Highlander, Sarah K.;
- Pieper, Rembert;
- Sender, Leonard;
- Nelson, Karen E.
Publication type:
Article
Correction to: Oral Microbial Species and Virulence Factors Associated with Oral Squamous Cell Carcinoma.
Published in:
2021
By:
- Torralba, Manolito G.;
- Aleti, Gajender;
- Li, Weizhong;
- Moncera, Kelvin Jens;
- Lin, Yi-Han;
- Yu, Yanbao;
- Masternak, Michal M.;
- Golusinski, Wojciech;
- Golusinski, Pawel;
- Lamperska, Katarzyna;
- Edlund, Anna;
- Freire, Marcelo;
- Nelson, Karen E.
Publication type:
Correction Notice
Oral Microbial Species and Virulence Factors Associated with Oral Squamous Cell Carcinoma.
Published in:
Microbial Ecology, 2021, v. 82, n. 4, p. 1030, doi. 10.1007/s00248-020-01596-5
By:
- Torralba, Manolito G.;
- Aleti, Gajender;
- Li, Weizhong;
- Moncera, Kelvin Jens;
- Lin, Yi-Han;
- Yu, Yanbao;
- Masternak, Michal M.;
- Golusinski, Wojciech;
- Golusinski, Pawel;
- Lamperska, Katarzyna;
- Edlund, Anna;
- Freire, Marcelo;
- Nelson, Karen E.
Publication type:
Article
Characterizing Microbial Signatures on Sculptures and Paintings of Similar Provenance.
Published in:
Microbial Ecology, 2021, v. 81, n. 4, p. 1098, doi. 10.1007/s00248-020-01504-x
By:
- Torralba, Manolito G.;
- Kuelbs, Claire;
- Moncera, Kelvin Jens;
- Roby, Rhonda;
- Nelson, Karen E.
Publication type:
Article
Persistent Gut Microbial Dysbiosis in Children with Acute Lymphoblastic Leukemia (ALL) During Chemotherapy.
Published in:
Microbial Ecology, 2020, v. 79, n. 4, p. 1034, doi. 10.1007/s00248-019-01448-x
By:
- Rajagopala, Seesandra V.;
- Singh, Harinder;
- Yu, Yanbao;
- Zabokrtsky, Keri B.;
- Torralba, Manolito G.;
- Moncera, Kelvin J.;
- Frank, Bryan;
- Pieper, Rembert;
- Sender, Leonard;
- Nelson, Karen E.
Publication type:
Article
Co-occurrence of Anaerobes in Human Chronic Wounds.
Published in:
Microbial Ecology, 2019, v. 77, n. 3, p. 808, doi. 10.1007/s00248-018-1231-z
By:
- Choi, Yongwook;
- Banerjee, Anirban;
- McNish, Sean;
- Couch, Kara S.;
- Torralba, Manolito G.;
- Lucas, Sarah;
- Tovchigrechko, Andrey;
- Madupu, Ramana;
- Yooseph, Shibu;
- Nelson, Karen E.;
- Shanmugam, Victoria K.;
- Chan, Agnes P.
Publication type:
Article
Bacterial Species Identified on the Skin of Bottlenose Dolphins Off Southern California via Next Generation Sequencing Techniques.
Published in:
Microbial Ecology, 2018, v. 75, n. 2, p. 303, doi. 10.1007/s00248-017-1071-2
By:
- Russo, Corey D.;
- Weller, David W.;
- Nelson, Karen E.;
- Chivers, Susan J.;
- Torralba, Manolito;
- Grimes, D. Jay
Publication type:
Article
Effect of Macondo Prospect 252 Oil on Microbiota Associated with Pelagic Sargassum in the Northern Gulf of Mexico.
Published in:
Microbial Ecology, 2017, v. 73, n. 1, p. 91, doi. 10.1007/s00248-016-0857-y
By:
- Torralba, Manolito;
- Franks, James;
- Gomez, Andres;
- Yooseph, Shibu;
- Nelson, Karen;
- Grimes, D.
Publication type:
Article
Minimally Invasive Sampling Method Identifies Differences in Taxonomic Richness of Nasal Microbiomes in Young Infants Associated with Mode of Delivery.
Published in:
Microbial Ecology, 2016, v. 71, n. 1, p. 233, doi. 10.1007/s00248-015-0663-y
By:
- Shilts, Meghan;
- Rosas-Salazar, Christian;
- Tovchigrechko, Andrey;
- Larkin, Emma;
- Torralba, Manolito;
- Akopov, Asmik;
- Halpin, Rebecca;
- Peebles, R.;
- Moore, Martin;
- Anderson, Larry;
- Nelson, Karen;
- Hartert, Tina;
- Das, Suman
Publication type:
Article
Antimicrobial Resistance of the Coral Pathogen Vibrio coralliilyticus and Caribbean Sister Phylotypes Isolated from a Diseased Octocoral.
Published in:
Microbial Ecology, 2010, v. 59, n. 4, p. 646, doi. 10.1007/s00248-010-9644-3
By:
- Vizcaino, Maria I.;
- Johnson, Wesley R.;
- Kimes, Nikole E.;
- Williams, Katherine;
- Torralba, Manolito;
- Nelson, Karen E.;
- Smith, Garriet W.;
- Weil, Ernesto;
- Moeller, Peter D. R.;
- Morris, Pamela J.
Publication type:
Article
Gastro-intestinal and oral microbiome signatures associated with healthy aging.
Published in:
GeroScience, 2019, v. 41, n. 6, p. 907, doi. 10.1007/s11357-019-00098-8
By:
- Singh, Harinder;
- Torralba, Manolito G.;
- Moncera, Kelvin J.;
- DiLello, Lauren;
- Petrini, Joann;
- Nelson, Karen E.;
- Pieper, Rembert
Publication type:
Article
Gut Microbial Changes in Diabetic db/db Mice and Recovery of Microbial Diversity upon Pirfenidone Treatment.
Published in:
Microorganisms, 2020, v. 8, n. 9, p. 1347, doi. 10.3390/microorganisms8091347
By:
- Singh, Harinder;
- Miyamoto, Satoshi;
- Darshi, Manjula;
- Torralba, Manolito G.;
- Kwon, Keehwan;
- Sharma, Kumar;
- Pieper, Rembert
Publication type:
Article
Longitudinal Study of Oral Microbiome Variation in Twins.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-64747-1
By:
- Freire, Marcelo;
- Moustafa, Ahmed;
- Harkins, Derek M.;
- Torralba, Manolito G.;
- Zhang, Yun;
- Leong, Pamela;
- Saffery, Richard;
- Bockmann, Michelle;
- Kuelbs, Claire;
- Hughes, Toby;
- Craig, Jeffrey M.;
- Nelson, Karen E.
Publication type:
Article
Study of the impact of long-duration space missions at the International Space Station on the astronaut microbiome.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-46303-8
By:
- Voorhies, Alexander A.;
- Mark Ott, C.;
- Mehta, Satish;
- Pierson, Duane L.;
- Crucian, Brian E.;
- Feiveson, Alan;
- Oubre, Cherie M.;
- Torralba, Manolito;
- Moncera, Kelvin;
- Zhang, Yun;
- Zurek, Eduardo;
- Lorenzi, Hernan A.
Publication type:
Article
Progressive dysbiosis of human orodigestive microbiota along the sequence of gastroesophageal reflux, Barrett's esophagus and esophageal adenocarcinoma.
Published in:
International Journal of Cancer, 2022, v. 151, n. 10, p. 1703, doi. 10.1002/ijc.34191
By:
- Hao, Yuhan;
- Karaoz, Ulas;
- Yang, Liying;
- Yachimski, Patrick S.;
- Tseng, Wenzhi;
- Nossa, Carlos W.;
- Ye, Weimin;
- Tseng, Mengkao;
- Poles, Michael;
- Francois, Fritz;
- Traube, Morris;
- Brown, Stuart M.;
- Chen, Yu;
- Torralba, Manolito;
- Peek, Richard M.;
- Brodie, Eoin L.;
- Pei, Zhiheng
Publication type:
Article
Intestinal fungi contribute to development of alcoholic liver disease.
Published in:
2017
By:
- An-Ming Yang;
- Tatsuo Inamine;
- Hochrath, Katrin;
- Peng Chen;
- Lirui Wang;
- Llorente, Cristina;
- Bluemel, Sena;
- Hartmann, Phillipp;
- Jun Xu;
- Yukinori Koyama;
- Kisseleva, Tatiana;
- Torralba, Manolito G.;
- Moncera, Kelvin;
- Beeri, Karen;
- Chien-Sheng Chen;
- Freese, Kim;
- Hellerbrand, Claus;
- Lee, Serene M. L.;
- Hoffman, Hal M.;
- Mehal, Wajahat Z.
Publication type:
journal article
The Montastraea faveolata microbiome: ecological and temporal influences on a Caribbean reef-building coral in decline.
Published in:
Environmental Microbiology, 2013, v. 15, n. 7, p. 2082, doi. 10.1111/1462-2920.12130
By:
- Kimes, Nikole E.;
- Johnson, Wesley R.;
- Torralba, Manolito;
- Nelson, Karen E.;
- Weil, Ernesto;
- Morris, Pamela J.
Publication type:
Article
Relationships Between Gastrointestinal Parasite Infections and the Fecal Microbiome in Free-Ranging Western Lowland Gorillas.
Published in:
Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.01202
By:
- Vlčková, Klára;
- Pafčo, Barbora;
- Petrželková, Klára J.;
- Modrý, David;
- Todd, Angelique;
- Yeoman, Carl J.;
- Torralba, Manolito;
- Wilson, Brenda A.;
- Stumpf, Rebecca M.;
- White, Bryan A.;
- Nelson, Karen E.;
- Leigh, Steven R.;
- Gomez, Andres
Publication type:
Article
Integrated next-generation sequencing of 16S rDNA and metaproteomics differentiate the healthy urine microbiome from asymptomatic bacteriuria in neuropathic bladder associated with spinal cord injury.
Published in:
Journal of Translational Medicine, 2012, v. 10, n. 1, p. 174, doi. 10.1186/1479-5876-10-174
By:
- Fouts, Derrick E.;
- Pieper, Rembert;
- Szpakowski, Sebastian;
- Pohl, Hans;
- Knoblach, Susan;
- Moo-Jin Suh;
- Shih-Ting Huang;
- Ljungberg, Inger;
- Sprague, Bruce M.;
- Lucas, Sarah K.;
- Torralba, Manolito;
- Nelson, Karen E.;
- Groah, Suzanne L.
Publication type:
Article
Electrochemical detection of Pseudomonas in wound exudate samples from patients with chronic wounds.
Published in:
Wound Repair & Regeneration, 2016, v. 24, n. 2, p. 366, doi. 10.1111/wrr.12414
By:
- Sismaet, Hunter J.;
- Banerjee, Anirban;
- McNish, Sean;
- Choi, Yongwook;
- Torralba, Manolito;
- Lucas, Sarah;
- Chan, Agnes;
- Shanmugam, Victoria K.;
- Goluch, Edgar D.
Publication type:
Article
A Microbiomic Analysis in African Americans with Colonic Lesions Reveals Streptococcus sp.VT162 as a Marker of Neoplastic Transformation.
Published in:
Genes, 2017, v. 8, n. 11, p. 314, doi. 10.3390/genes8110314
By:
- Brim, Hassan;
- Yooseph, Shibu;
- Lee, Edward;
- Sherif, Zaki A.;
- Abbas, Muneer;
- Laiyemo, Adeyinka O.;
- Varma, Sudhir;
- Torralba, Manolito;
- Dowd, Scot E.;
- Nelson, Karen E.;
- Pathmasiri, Wimal;
- Sumner, Susan;
- de Vos, Willem;
- Qiaoyi Liang;
- Jun Yu;
- Zoetendal, Erwin;
- Ashktorab, Hassan
Publication type:
Article
Stool microbiota composition is associated with the prospective risk of Plasmodium falciparum infection.
Published in:
BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1819-3
By:
- Yooseph, Shibu;
- Kirkness, Ewen F.;
- Tran, Tuan M.;
- Harkins, Derek M.;
- Jones, Marcus B.;
- Torralba, Manolito G.;
- O'Connell, Elise;
- Nutman, Thomas B.;
- Doumbo, Safiatou;
- Doumbo, Ogobara K.;
- Traore, Boubacar;
- Crompton, Peter D.;
- Nelson, Karen E.
Publication type:
Article
Stool microbiota composition is associated with the prospective risk of Plasmodium falciparum infection.
Published in:
BMC Genomics, 2015, v. 16, n. 1, p. 631, doi. 10.1186/s12864-015-1819-3
By:
- Yooseph, Shibu;
- Kirkness, Ewen F.;
- Tran, Tuan M.;
- Harkins, Derek M.;
- Jones, Marcus B.;
- Torralba, Manolito G.;
- O’Connell, Elise;
- Nutman, Thomas B.;
- Doumbo, Safiatou;
- Doumbo, Ogobara K.;
- Traore, Boubacar;
- Crompton, Peter D.;
- Nelson, Karen E.
Publication type:
Article

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