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Validity and Reliability of CBCT Derived 2D Perspective Cephalometric Images and 3D Orthogonal Imaging: A Comparative Evaluation.
Published in:
Journal of Indian Orthodontic Society, 2013, v. 47, p. 295, doi. 10.5005/jp-journals-10021-1176
By:
- Sharma, Hema;
- Krishnaswamy, N. R.;
- Thomas, Paul M.
Publication type:
Article
Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma.
Published in:
Journal of Experimental & Clinical Cancer Research (17569966), 2020, v. 39, n. 1, p. 1, doi. 10.1186/s13046-020-01773-x
By:
- An, Shejuan;
- Camarillo, Jeannie M.;
- Huang, Tina Yi-Ting;
- Li, Daphne;
- Morris, Juliette A.;
- Zoltek, Madeline A.;
- Qi, Jin;
- Behbahani, Mandana;
- Kambhampati, Madhuri;
- Kelleher, Neil L.;
- Nazarian, Javad;
- Thomas, Paul M.;
- Saratsis, Amanda M.
Publication type:
Article
A synthetic biology approach to probing nucleosome symmetry.
Published in:
eLife, 2017, p. 1, doi. 10.7554/eLife.28836
By:
- Ichikawa, Yuichi;
- Connelly, Caitlin F.;
- Appleboim, Alon;
- Miller, Thomas C. R.;
- Jacobi, Hadas;
- Abshiru, Nebiyu A.;
- Hsin-Jung Chou;
- Yuanyuan Chen;
- Sharma, Upasna;
- Yupeng Zheng;
- Thomas, Paul M.;
- Chen, Hsuiyi V.;
- Bajaj, Vineeta;
- Müller, Christoph W.;
- Kelleher, Neil L.;
- Friedman, Nir;
- Bolon, Daniel N. A.;
- Rando, Oliver J.;
- Kaufma, Paul D.
Publication type:
Article
TRACKING ACIDIC PHARMACEUTICALS, CAFFEINE, AND TRICLOSAN THROUGH THE WASTEWATER TREATMENT PROCESS.
Published in:
Environmental Toxicology & Chemistry, 2005, v. 24, n. 1, p. 25, doi. 10.1897/04-144R.1
By:
- Thomas, Paul M.;
- Foster, Gregory D.
Publication type:
Article
A proteomics approach to discovering natural products and their biosynthetic pathways.
Published in:
Nature Biotechnology, 2009, v. 27, n. 10, p. 951, doi. 10.1038/nbt.1565
By:
- Bumpus, Stefanie B;
- Evans, Bradley S;
- Thomas, Paul M;
- Ntai, Ioanna;
- Kelleher, Neil L
Publication type:
Article
A protease for 'middle-down' proteomics.
Published in:
Nature Methods, 2012, v. 9, n. 8, p. 822, doi. 10.1038/nmeth.2074
By:
- Wu, Cong;
- Tran, John C;
- Zamdborg, Leonid;
- Durbin, Kenneth R;
- Li, Mingxi;
- Ahlf, Dorothy R;
- Early, Bryan P;
- Thomas, Paul M;
- Sweedler, Jonathan V;
- Kelleher, Neil L
Publication type:
Article
Top-Down Proteomics with Mass Spectrometry Imaging: A Pilot Study towards Discovery of Biomarkers for Neurodevelopmental Disorders.
Published in:
PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0092831
By:
- Ye, Hui;
- Mandal, Rakesh;
- Catherman, Adam;
- Thomas, Paul M.;
- Kelleher, Neil L.;
- Ikonomidou, Chrysanthy;
- Li, Lingjun
Publication type:
Article
Comparative top down proteomics of peripheral blood mononuclear cells from kidney transplant recipients with normal kidney biopsies or acute rejection.
Published in:
Proteomics, 2016, v. 16, n. 14, p. 2048, doi. 10.1002/pmic.201600008
By:
- Savaryn, John P.;
- Toby, Timothy K.;
- Catherman, Adam D.;
- Fellers, Ryan T.;
- LeDuc, Richard D.;
- Thomas, Paul M.;
- Friedewald, John J.;
- Salomon, Daniel R.;
- Abecassis, Michael M.;
- Kelleher, Neil L.
Publication type:
Article
ProSight Lite: Graphical software to analyze top-down mass spectrometry data.
Published in:
Proteomics, 2015, v. 15, n. 7, p. 1235, doi. 10.1002/pmic.201400313
By:
- Fellers, Ryan T.;
- Greer, Joseph B.;
- Early, Bryan P.;
- Yu, Xiang;
- LeDuc, Richard D.;
- Kelleher, Neil L.;
- Thomas, Paul M.
Publication type:
Article
Site-specific human histone H3 methylation stability: fast K4me3 turnover.
Published in:
Proteomics, 2014, v. 14, n. 19, p. 2190, doi. 10.1002/pmic.201400060
By:
- Zheng, Yupeng;
- Tipton, Jeremiah D.;
- Thomas, Paul M.;
- Kelleher, Neil L.;
- Sweet, Steve M. M.
Publication type:
Article
The first pilot project of the consortium for top-down proteomics: A status report.
Published in:
Proteomics, 2014, v. 14, n. 10, p. 1130, doi. 10.1002/pmic.201300438
By:
- Dang, Xibei;
- Scotcher, Jenna;
- Wu, Si;
- Chu, Rosalie K.;
- Tolić, Nikola;
- Ntai, Ioanna;
- Thomas, Paul M.;
- Fellers, Ryan T.;
- Early, Bryan P.;
- Zheng, Yupeng;
- Durbin, Kenneth R.;
- LeDuc, Richard D.;
- Wolff, Jeremy J.;
- Thompson, Christopher J.;
- Pan, Jingxi;
- Han, Jun;
- Shaw, Jared B.;
- Salisbury, Joseph P.;
- Easterling, Michael;
- Borchers, Christoph H.
Publication type:
Article
Native top-down mass spectrometry provides insights into the copper centers of membrane-bound methane monooxygenase.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10590-6
By:
- Ro, Soo Y.;
- Schachner, Luis F.;
- Koo, Christopher W.;
- Purohit, Rahul;
- Remis, Jonathan P.;
- Kenney, Grace E.;
- Liauw, Brandon W.;
- Thomas, Paul M.;
- Patrie, Steven M.;
- Kelleher, Neil L.;
- Rosenzweig, Amy C.
Publication type:
Article
Microbial and metabolic succession on common building materials under high humidity conditions.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-09764-z
By:
- Lax, Simon;
- Cardona, Cesar;
- Zhao, Dan;
- Winton, Valerie J.;
- Goodney, Gabriel;
- Gao, Peng;
- Gottel, Neil;
- Hartmann, Erica M.;
- Henry, Chris;
- Thomas, Paul M.;
- Kelley, Scott T.;
- Stephens, Brent;
- Gilbert, Jack A.
Publication type:
Article
Characterization of a long overlooked copper protein from methane- and ammonia-oxidizing bacteria.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06681-5
By:
- Fisher, Oriana S.;
- Kenney, Grace E.;
- Ross, Matthew O.;
- Ro, Soo Y.;
- Lemma, Betelehem E.;
- Batelu, Sharon;
- Thomas, Paul M.;
- Sosnowski, Victoria C.;
- DeHart, Caroline J.;
- Kelleher, Neil L.;
- Stemmler, Timothy L.;
- Hoffman, Brian M.;
- Rosenzweig, Amy C.
Publication type:
Article
Targeted detection and quantitation of histone modifications from 1,000 cells.
Published in:
PLoS ONE, 2020, v. 15, n. 10, p. 1, doi. 10.1371/journal.pone.0240829
By:
- Abshiru, Nebiyu A.;
- Sikora, Jacek W.;
- Camarillo, Jeannie M.;
- Morris, Juliette A.;
- Compton, Philip D.;
- Lee, Tak;
- Neelamraju, Yaseswini;
- Haddox, Samuel;
- Sheridan, Caroline;
- Carroll, Martin;
- Cripe, Larry D.;
- Tallman, Martin S.;
- Paietta, Elisabeth M.;
- Melnick, Ari M.;
- Thomas, Paul M.;
- Garrett-Bakelman, Francine E.;
- Kelleher, Neil L.
Publication type:
Article
ProSight Annotator: Complete control and customization of protein entries in UniProt XML files.
Published in:
Proteomics, 2022, v. 22, n. 11, p. 1, doi. 10.1002/pmic.202100209
By:
- Greer, Joseph B.;
- Early, Bryan P.;
- Durbin, Kenneth R.;
- Patrie, Steven M.;
- Thomas, Paul M.;
- Kelleher, Neil L.;
- LeDuc, Richard D.;
- Fellers, Ryan T.
Publication type:
Article
Back Cover: Identification and Quantification of Proteoforms by Mass Spectrometry.
Published in:
Proteomics, 2019, v. 19, n. 10, p. N.PAG, doi. 10.1002/pmic.201970085
By:
- Schaffer, Leah V.;
- Millikin, Robert J.;
- Miller, Rachel M.;
- Anderson, Lissa C.;
- Fellers, Ryan T.;
- Ge, Ying;
- Kelleher, Neil L.;
- LeDuc, Richard D.;
- Liu, Xiaowen;
- Payne, Samuel H.;
- Sun, Liangliang;
- Thomas, Paul M.;
- Tucholski, Trisha;
- Wang, Zhe;
- Wu, Si;
- Wu, Zhijie;
- Yu, Dahang;
- Shortreed, Michael R.;
- Smith, Lloyd M.
Publication type:
Article
Identification and Quantification of Proteoforms by Mass Spectrometry.
Published in:
Proteomics, 2019, v. 19, n. 10, p. 1, doi. 10.1002/pmic.201800361
By:
- Schaffer, Leah V.;
- Millikin, Robert J.;
- Miller, Rachel M.;
- Anderson, Lissa C.;
- Fellers, Ryan T.;
- Ge, Ying;
- Kelleher, Neil L.;
- LeDuc, Richard D.;
- Liu, Xiaowen;
- Payne, Samuel H.;
- Sun, Liangliang;
- Thomas, Paul M.;
- Tucholski, Trisha;
- Wang, Zhe;
- Wu, Si;
- Wu, Zhijie;
- Yu, Dahang;
- Shortreed, Michael R.;
- Smith, Lloyd M.
Publication type:
Article
Innenrücktitelbild: Proteoform‐Selective Imaging of Tissues Using Mass Spectrometry (Angew. Chem. 29/2022).
Published in:
Angewandte Chemie, 2022, v. 134, n. 29, p. 1, doi. 10.1002/ange.202207371
By:
- Yang, Manxi;
- Hu, Hang;
- Su, Pei;
- Thomas, Paul M.;
- Camarillo, Jeannie M.;
- Greer, Joseph B.;
- Early, Bryan P.;
- Fellers, Ryan T.;
- Kelleher, Neil L.;
- Laskin, Julia
Publication type:
Article
Proteoform‐Selective Imaging of Tissues Using Mass Spectrometry**.
Published in:
Angewandte Chemie, 2022, v. 134, n. 29, p. 1, doi. 10.1002/ange.202200721
By:
- Yang, Manxi;
- Hu, Hang;
- Su, Pei;
- Thomas, Paul M.;
- Camarillo, Jeannie M.;
- Greer, Joseph B.;
- Early, Bryan P.;
- Fellers, Ryan T.;
- Kelleher, Neil L.;
- Laskin, Julia
Publication type:
Article
Orthognathic Surgery in the Growing Patient: What, When, and Why.
Published in:
2005
By:
- Thomas, Paul M.
Publication type:
Proceeding
Measurement of acetylation turnover at distinct lysines in human histones identifies long-lived acetylation sites.
Published in:
Nature Communications, 2013, v. 4, n. 7, p. 2203, doi. 10.1038/ncomms3203
By:
- Zheng, Yupeng;
- Thomas, Paul M.;
- Kelleher, Neil L.
Publication type:
Article
The vermiform appendix impacts the risk of developing Parkinson's disease.
Published in:
Science Translational Medicine, 2018, v. 10, n. 465, p. 1, doi. 10.1126/scitranslmed.aar5280
By:
- Killinger, Bryan A.;
- Madaj, Zachary;
- Sikora, Jacek W.;
- Rey, Nolwen;
- Haas, Alec J.;
- Vepa, Yamini;
- Lindqvist, Daniel;
- Chen, Honglei;
- Thomas, Paul M.;
- Brundin, Patrik;
- Brundin, Lena;
- Labrie, Viviane
Publication type:
Article
Inside Back Cover: Proteoform‐Selective Imaging of Tissues Using Mass Spectrometry (Angew. Chem. Int. Ed. 29/2022).
Published in:
Angewandte Chemie International Edition, 2022, v. 61, n. 29, p. 1, doi. 10.1002/anie.202207371
By:
- Yang, Manxi;
- Hu, Hang;
- Su, Pei;
- Thomas, Paul M.;
- Camarillo, Jeannie M.;
- Greer, Joseph B.;
- Early, Bryan P.;
- Fellers, Ryan T.;
- Kelleher, Neil L.;
- Laskin, Julia
Publication type:
Article
Proteoform‐Selective Imaging of Tissues Using Mass Spectrometry**.
Published in:
Angewandte Chemie International Edition, 2022, v. 61, n. 29, p. 1, doi. 10.1002/anie.202200721
By:
- Yang, Manxi;
- Hu, Hang;
- Su, Pei;
- Thomas, Paul M.;
- Camarillo, Jeannie M.;
- Greer, Joseph B.;
- Early, Bryan P.;
- Fellers, Ryan T.;
- Kelleher, Neil L.;
- Laskin, Julia
Publication type:
Article
Chemical composition of material extractives influences microbial growth and dynamics on wetted wood materials.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-71560-3
By:
- Zhao, Dan;
- Cardona, Cesar;
- Gottel, Neil;
- Winton, Valerie J.;
- Thomas, Paul M.;
- Raba, Daniel A.;
- Kelley, Scott T.;
- Henry, Christopher;
- Gilbert, Jack A.;
- Stephens, Brent
Publication type:
Article
Mapping intact protein isoforms in discovery mode using top-down proteomics.
Published in:
Nature, 2011, v. 480, n. 7376, p. 254, doi. 10.1038/nature10575
By:
- Tran, John C.;
- Zamdborg, Leonid;
- Ahlf, Dorothy R.;
- Lee, Ji Eun;
- Catherman, Adam D.;
- Durbin, Kenneth R.;
- Tipton, Jeremiah D.;
- Vellaichamy, Adaikkalam;
- Kellie, John F.;
- Li, Mingxi;
- Wu, Cong;
- Sweet, Steve M. M.;
- Early, Bryan P.;
- Siuti, Nertila;
- LeDuc, Richard D.;
- Compton, Philip D.;
- Thomas, Paul M.;
- Kelleher, Neil L.
Publication type:
Article
Human Proteoform Atlas: a FAIR community resource for experimentally derived proteoforms.
Published in:
Nucleic Acids Research, 2022, v. 50, n. D1, p. D526, doi. 10.1093/nar/gkab1086
By:
- Hollas, Michael A R;
- Robey, Matthew T;
- Fellers, Ryan T;
- LeDuc, Richard D;
- Thomas, Paul M;
- Kelleher, Neil L
Publication type:
Article
Cell-free protein synthesis from genomically recoded bacteria enables multisite incorporation of noncanonical amino acids.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03469-5
By:
- Martin, Rey W.;
- Des Soye, Benjamin J.;
- Yong-Chan Kwon;
- Kay, Jennifer;
- Davis, Roderick G.;
- Thomas, Paul M.;
- Majewska, Natalia I.;
- Chen, Cindy X.;
- Marcum, Ryan D.;
- Weiss, Mary Grace;
- Stoddart, Ashleigh E.;
- Amiram, Miriam;
- Ranji Charna, Arnaz K.;
- Patel, Jaymin R.;
- Isaacs, Farren J.;
- Kelleher, Neil L.;
- Seok Hoon Hong;
- Jewett, Michael C.
Publication type:
Article
Stability of histone post-translational modifications in samples derived from liver tissue and primary hepatic cells.
Published in:
PLoS ONE, 2018, v. 13, n. 9, p. 1, doi. 10.1371/journal.pone.0203351
By:
- Gruppuso, Philip A.;
- Boylan, Joan M.;
- Zabala, Valerie;
- Neretti, Nicola;
- Abshiru, Nebiyu A.;
- Sikora, Jacek W.;
- Doud, Emma H.;
- Camarillo, Jeannie M.;
- Thomas, Paul M.;
- Kelleher, Neil L.;
- Sanders, Jennifer A.
Publication type:
Article
Unusual transformations in the biosynthesis of the antibiotic phosphinothricin tripeptide.
Published in:
Nature Chemical Biology, 2007, v. 3, n. 8, p. 480, doi. 10.1038/nchembio.2007.9
By:
- Blodgett, Joshua A. V.;
- Thomas, Paul M.;
- Gongyong Li;
- Velasquez, Juan E.;
- van der Donk, Wilfred A.;
- Kelleher, Neil L.;
- Metcalf, William W.
Publication type:
Article
Fungal artificial chromosomes for mining of the fungal secondary metabolome.
Published in:
BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1561-x
By:
- Jin Woo Bok;
- Rosa Ye;
- Clevenger, Kenneth D.;
- Mead, David;
- Wagner, Megan;
- Krerowicz, Amanda;
- Albright, Jessica C.;
- Goering, Anthony W.;
- Thomas, Paul M.;
- Kelleher, Neil L.;
- Keller, Nancy P.;
- Wu, Chengcang C.
Publication type:
Article
NMT1 and NMT2 are lysine myristoyltransferases regulating the ARF6 GTPase cycle.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14893-x
By:
- Kosciuk, Tatsiana;
- Price, Ian R.;
- Zhang, Xiaoyu;
- Zhu, Chengliang;
- Johnson, Kayla N.;
- Zhang, Shuai;
- Halaby, Steve L.;
- Komaniecki, Garrison P.;
- Yang, Min;
- DeHart, Caroline J.;
- Thomas, Paul M.;
- Kelleher, Neil L.;
- Fromme, J. Christopher;
- Lin, Hening
Publication type:
Article
NMT1 and NMT2 are lysine myristoyltransferases regulating the ARF6 GTPase cycle.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14893-x
By:
- Kosciuk, Tatsiana;
- Price, Ian R.;
- Zhang, Xiaoyu;
- Zhu, Chengliang;
- Johnson, Kayla N.;
- Zhang, Shuai;
- Halaby, Steve L.;
- Komaniecki, Garrison P.;
- Yang, Min;
- DeHart, Caroline J.;
- Thomas, Paul M.;
- Kelleher, Neil L.;
- Christopher Fromme, J.;
- Lin, Hening
Publication type:
Article
Development of novel methods for non-canonical myeloma protein analysis with an innovative adaptation of immunofixation electrophoresis, native top-down mass spectrometry, and middle-down de novo sequencing.
Published in:
Clinical Chemistry & Laboratory Medicine, 2021, v. 59, n. 4, p. 653, doi. 10.1515/cclm-2020-1072
By:
- Deighan, W. Ian;
- Winton, Valerie J.;
- Melani, Rafael D.;
- Anderson, Lissa C.;
- McGee, John P.;
- Schachner, Luis F.;
- Barnidge, David;
- Murray, David;
- Alexander, H. Denis;
- Gibson, David S.;
- Deery, Michael J.;
- McNicholl, Feargal P.;
- McLaughlin, Joseph;
- Kelleher, Neil L.;
- Thomas, Paul M.
Publication type:
Article
Reassignment of the Structure of the Antibiotic A53868 Reveals an Unusual Amino Dehydrophosphonic Acid.
Published in:
Angewandte Chemie International Edition, 2007, v. 46, n. 47, p. 9089, doi. 10.1002/anie.200703810
By:
- Whitteck, John T.;
- Ni, Weijuan;
- Griffin, Benjamin M.;
- Eliot, Andrew C.;
- Thomas, Paul M.;
- Kelleher, Neil L.;
- Metcalf, William W.;
- van der Donk, Wilfred A.
Publication type:
Article
Identification of Plasmodium falciparum proteoforms from liver stage models.
Published in:
Malaria Journal, 2020, v. 19, n. 1, p. 1, doi. 10.1186/s12936-019-3093-3
By:
- Winer, Benjamin;
- Edgel, Kimberly A.;
- Zou, Xiaoyan;
- Sellau, Julie;
- Hadiwidjojo, Sri;
- Garver, Lindsey S.;
- McDonough, Christin E.;
- Kelleher, Neil L.;
- Thomas, Paul M.;
- Villasante, Eileen;
- Ploss, Alexander;
- Gerbasi, Vincent R.
Publication type:
Article

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