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Integrated single cell and spatial transcriptomics reveal autoreactive differentiated B cells in joints of early rheumatoid arthritis.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-15293-5
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- Publication type:
- Article
Identification of visual cortex cell types and species differences using single-cell RNA sequencing.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34590-1
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- Publication type:
- Article
A brain precursor atlas reveals the acquisition of developmental-like states in adult cerebral tumours.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31408-y
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- Publication type:
- Article
Community voices: policy proposals to promote inclusion in academia through the lens of women in science.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31616-6
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- Publication type:
- Article
Cell Atlas technologies and insights into tissue architecture.
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- Biochemical Journal, 2020, v. 477, n. 8, p. 1427, doi. 10.1042/BCJ20190341
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- Article
Genes Encoding Subunits of Stable Complexes Are Clustered on the Yeast Chromosomes: An Interpretation From a Dosage Balance Perspective.
- Published in:
- Genetics, 2004, v. 167, n. 4, p. 2121, doi. 10.1534/genetics.103.024505
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- Publication type:
- Article
The Human Cell Atlas.
- Published in:
- eLife, 2017, p. 1, doi. 10.7554/eLife.27041
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- Publication type:
- Article
EpiChIP: gene-by-gene quantification of epigenetic modification levels.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 5, p. e27, doi. 10.1093/nar/gkq1226
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- Publication type:
- Article
Genomic repertoires of DNA-binding transcription factors across the tree of life.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 21, p. 7364, doi. 10.1093/nar/gkq617
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- Publication type:
- Article
FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database.
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- Nucleic Acids Research, 2010, v. 38, p. D443, doi. 10.1093/nar/gkp910
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- Publication type:
- Article
BloodExpress: a database of gene expression in mouse haematopoiesis.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D873, doi. 10.1093/nar/gkn854
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- Publication type:
- Article
DBD––taxonomically broad transcription factor predictions: new content and functionality.
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- Nucleic Acids Research, 2008, v. 36, p. D88, doi. 10.1093/nar/gkm964
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- Publication type:
- Article
Dandelion uses the single-cell adaptive immune receptor repertoire to explore lymphocyte developmental origins.
- Published in:
- Nature Biotechnology, 2024, v. 42, n. 1, p. 40, doi. 10.1038/s41587-023-01734-7
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- Publication type:
- Article
Quantification of absolute transcription factor binding affinities in the native chromatin context using BANC-seq.
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- Nature Biotechnology, 2023, v. 41, n. 12, p. 1801, doi. 10.1038/s41587-023-01715-w
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- Publication type:
- Article
Differential abundance testing on single-cell data using k-nearest neighbor graphs.
- Published in:
- Nature Biotechnology, 2022, v. 40, n. 2, p. 245, doi. 10.1038/s41587-021-01033-z
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- Publication type:
- Article
Building a high-quality Human Cell Atlas.
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- 2021
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- Publication type:
- Letter
The Organoid Cell Atlas.
- Published in:
- 2021
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- Publication type:
- Letter
Guidelines for reporting single-cell RNA-seq experiments.
- Published in:
- 2020
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- Publication type:
- Letter
Single-cell analysis at the threshold.
- Published in:
- Nature Biotechnology, 2016, v. 34, n. 11, p. 1111, doi. 10.1038/nbt.3721
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- Publication type:
- Article
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells.
- Published in:
- Nature Biotechnology, 2015, v. 33, n. 2, p. 155, doi. 10.1038/nbt.3102
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- Publication type:
- Article
Computing protein function.
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- Nature Biotechnology, 2000, v. 18, n. 1, p. 27, doi. 10.1038/71882
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- Publication type:
- Article
SOX9 maintains human foetal lung tip progenitor state by enhancing WNT and RTK signalling.
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- EMBO Journal, 2022, v. 41, n. 21, p. 1, doi. 10.15252/embj.2022111338
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- Publication type:
- Article
Gene regulatory network growth by duplication.
- Published in:
- Nature Genetics, 2004, v. 36, n. 5, p. 492, doi. 10.1038/ng1340
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- Publication type:
- Article
Corrigendum: Accounting for technical noise in single-cell RNA-seq experiments.
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- Nature Methods, 2014, v. 11, n. 2, p. 210, doi. 10.1038/nmeth0214-210b
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- Publication type:
- Article
Accounting for technical noise in single-cell RNA-seq experiments.
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- Nature Methods, 2013, v. 10, n. 11, p. 1093, doi. 10.1038/nmeth.2645
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- Publication type:
- Article
Predicting the Strongest Domain-Domain Contact in Interacting Protein Pairs.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2006, v. 5, n. 1, p. 1, doi. 10.2202/1544-6115.1195
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- Publication type:
- Article
Bin2cell reconstructs cells from high resolution Visium HD data.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae546
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- Publication type:
- Article
The folding and evolution of multidomain proteins.
- Published in:
- Nature Reviews Molecular Cell Biology, 2007, v. 8, n. 4, p. 319, doi. 10.1038/nrm2144
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- Publication type:
- Article
Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression.
- Published in:
- Scientific Reports, 2015, p. 8687, doi. 10.1038/ncomms9687
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- Publication type:
- Article
spinDrop: a droplet microfluidic platform to maximise single-cell sequencing information content.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40322-w
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- Publication type:
- Article
MultiMAP: dimensionality reduction and integration of multimodal data.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02565-y
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- Publication type:
- Article
Transcriptional signals of transformation in human cancer.
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- Genome Medicine, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13073-023-01279-z
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- Publication type:
- Article
Computational and analytical challenges in single-cell transcriptomics.
- Published in:
- Nature Reviews Genetics, 2015, v. 16, n. 3, p. 133, doi. 10.1038/nrg3833
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- Publication type:
- Article
A census of human transcription factors: function, expression and evolution.
- Published in:
- 2009
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- Publication type:
- research
O13 Benchmarking a human pluripotent stem cell-derived hair-bearing skin organoid model to prenatal skin.
- Published in:
- British Journal of Dermatology, 2024, v. 190, n. 6, p. e74, doi. 10.1093/bjd/ljae105.013
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- Publication type:
- Article
Single cell analysis of human foetal liver captures the transcriptional profile of hepatobiliary hybrid progenitors.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11266-x
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- Publication type:
- Article
A rapid and robust method for single cell chromatin accessibility profiling.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07771-0
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- Publication type:
- Article
Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07307-6
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- Publication type:
- Article
Protein domain organisation: adding order.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-39
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- Publication type:
- Article
In conversation with Sarah Teichmann.
- Published in:
- FEBS Journal, 2019, v. 286, n. 8, p. 1445, doi. 10.1111/febs.14806
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- Article
Molecular connectomics: Placing cells into morphological tissue context.
- Published in:
- PLoS Biology, 2024, v. 22, n. 8, p. 1, doi. 10.1371/journal.pbio.3002803
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- Publication type:
- Article
Assembly reflects evolution of protein complexes.
- Published in:
- Nature, 2008, v. 453, n. 7199, p. 1262, doi. 10.1038/nature06942
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- Publication type:
- Article
CLICK-chemoproteomics and molecular dynamics simulation reveals pregnenolone targets and their binding conformations in Th2 cells.
- Published in:
- Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1229703
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- Publication type:
- Article
DBD: a transcription factor prediction database.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d74, doi. 10.1093/nar/gkj131
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- Publication type:
- Article
Evolution of transcription factors and the gene regulatory network in Escherichia coli.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 4, p. 1234, doi. 10.1093/nar/gkg210
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- Publication type:
- Article
RNA sequencing reveals two major classes of gene expression levels in metazoan cells.
- Published in:
- Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.28
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- Publication type:
- Article
Assessing Computational Methods of Cis-Regulatory Module Prediction.
- Published in:
- PLoS Computational Biology, 2010, v. 6, n. 12, p. 1, doi. 10.1371/journal.pcbi.1001020
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- Publication type:
- Article
The (In)dependence of Alternative Splicing and Gene Duplication.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 3, p. 0375, doi. 10.1371/journal.pcbi.0030033
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- Publication type:
- Article
3D Complex: A Structural Classification of Protein Complexes.
- Published in:
- PLoS Computational Biology, 2006, v. 2, n. 11, p. 1395, doi. 10.1371/journal.pcbi.0020155
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- Publication type:
- Article
Human γδ T cells in diverse tissues exhibit site-specific maturation dynamics across the life span.
- Published in:
- Science Immunology, 2024, v. 9, n. 96, p. 1, doi. 10.1126/sciimmunol.adn3954
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- Publication type:
- Article