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Editorial: Computational Methods for Microbiome Analysis.
- Published in:
- 2020
- By:
- Publication type:
- Editorial
Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants.
- Published in:
- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6609-x
- By:
- Publication type:
- Article
Finding approximate gene clusters with GECKO 3.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 20, p. 9600, doi. 10.1093/nar/gkw843
- By:
- Publication type:
- Article
Taxonomic classification of metagenomic shotgun sequences with CARMA3.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 14, p. e91, doi. 10.1093/nar/gkr225
- By:
- Publication type:
- Article
Phylogenetic classification of short environmental DNA fragments.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. 7, p. 2230, doi. 10.1093/nar/gkn038
- By:
- Publication type:
- Article
Comparative Pathway Analyzer—a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W433, doi. 10.1093/nar/gkn284
- By:
- Publication type:
- Article
GISMO—gene identification using a support vector machine for ORF classification.
- Published in:
- Nucleic Acids Research, 2007, v. 35, n. 2, p. 540
- By:
- Publication type:
- Article
Correction: GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers.
- Published in:
- 2024
- By:
- Publication type:
- Correction Notice
Corrigendum: Updating benchtop sequencing performance comparison.
- Published in:
- Nature Biotechnology, 2013, v. 31, n. 12, p. 1148, doi. 10.1038/nbt1213-1148e
- By:
- Publication type:
- Article
Updating benchtop sequencing performance comparison.
- Published in:
- Nature Biotechnology, 2013, v. 31, n. 4, p. 294, doi. 10.1038/nbt.2522
- By:
- Publication type:
- Article
Investigating the complexity of the double distance problems.
- Published in:
- Algorithms for Molecular Biology, 2024, v. 19, n. 1, p. 1, doi. 10.1186/s13015-023-00246-y
- By:
- Publication type:
- Article
Partitioning biological data with transitivity clustering.
- Published in:
- 2010
- By:
- Publication type:
- Letter
Detecting high-scoring local alignments in pangenome graphs.
- Published in:
- Bioinformatics, 2021, v. 37, n. 16, p. 2266, doi. 10.1093/bioinformatics/btab077
- By:
- Publication type:
- Article
GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers.
- Published in:
- PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107014
- By:
- Publication type:
- Article
Orthology Detection Combining Clustering and Synteny for Very Large Datasets.
- Published in:
- PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0105015
- By:
- Publication type:
- Article
<i>Mycoplasma salivarium</i> as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma.
- Published in:
- PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0092297
- By:
- Publication type:
- Article
Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing.
- Published in:
- PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0041606
- By:
- Publication type:
- Article
Statistics for approximate gene clusters.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-14-S15-S14
- By:
- Publication type:
- Article
On the inversion-indel distance.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-14-S15-S3
- By:
- Publication type:
- Article
metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. Suppl 5, p. 1, doi. 10.1186/1471-2105-14-S5-S2
- By:
- Publication type:
- Article
Gene family assignment-free comparative genomics.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. Suppl 19, p. 1, doi. 10.1186/1471-2105-13-S19-S3
- By:
- Publication type:
- Article
Multiple genome comparison based on overlap regions of pairwise local alignments.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. Suppl 19, p. 1, doi. 10.1186/1471-2105-13-S19-S7
- By:
- Publication type:
- Article
Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. 1, p. 214, doi. 10.1186/1471-2105-13-214
- By:
- Publication type:
- Article
Genomic distance under gene substitutions.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 9, p. 1, doi. 10.1186/1471-2105-12-S9-S8
- By:
- Publication type:
- Article
On the weight of indels in genomic distances.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 9, p. 1, doi. 10.1186/1471-2105-12-S9-S13
- By:
- Publication type:
- Article
Swiftly Computing Center Strings.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. 1, p. 106, doi. 10.1186/1471-2105-12-106
- By:
- Publication type:
- Article
Large scale hierarchical clustering of protein sequences.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. 15, doi. 10.1186/1471-2105-6-15
- By:
- Publication type:
- Article
Benchmarking tools for the alignment of functional noncoding DNA.
- Published in:
- BMC Bioinformatics, 2004, v. 5, p. 6, doi. 10.1186/1471-2105-5-6
- By:
- Publication type:
- Article
Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium.
- Published in:
- PLoS Pathogens, 2019, v. 15, n. 1, p. 1, doi. 10.1371/journal.ppat.1007513
- By:
- Publication type:
- Article
HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets.
- Published in:
- Molecular Biology & Evolution, 2023, v. 40, n. 3, p. 1, doi. 10.1093/molbev/msad027
- By:
- Publication type:
- Article
REPuter: the manifold applications of repeat analysis on a genomic scale.
- Published in:
- Nucleic Acids Research, 2001, v. 29, n. 22, p. 4633, doi. 10.1093/nar/29.22.4633
- By:
- Publication type:
- Article
Finding all maximal perfect haplotype blocks in linear time.
- Published in:
- Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-0163-6
- By:
- Publication type:
- Article
Approximating the DCJ distance of balanced genomes in linear time.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0095-y
- By:
- Publication type:
- Article
Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage.
- Published in:
- Algorithms for Molecular Biology, 2016, v. 11, p. 1, doi. 10.1186/s13015-016-0066-8
- By:
- Publication type:
- Article
On the family-free DCJ distance and similarity.
- Published in:
- Algorithms for Molecular Biology, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13015-015-0041-9
- By:
- Publication type:
- Article
Phylogenetic comparative assembly.
- Published in:
- Algorithms for Molecular Biology, 2010, v. 5, p. 1
- By:
- Publication type:
- Article
Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma.
- Published in:
- Carcinogenesis, 2016, v. 37, n. 4, p. 356, doi. 10.1093/carcin/bgw018
- By:
- Publication type:
- Article
GraphTeams: a method for discovering spatial gene clusters in Hi-C sequencing data.
- Published in:
- 2018
- By:
- Publication type:
- Abstract
Reconstructing tumor evolutionary histories and clone trees in polynomial-time with SubMARine.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008400
- By:
- Publication type:
- Article
Panta rhei (QAlign2): an open graphical environment for sequence analysis.
- Published in:
- Bioinformatics, 2006, v. 22, n. 7, p. 889
- By:
- Publication type:
- Article
BACCardI—a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.
- Published in:
- Bioinformatics, 2005, v. 21, n. 7, p. 853, doi. 10.1093/bioinformatics/bti091
- By:
- Publication type:
- Article
An iterative method for faster sum-of-pairs multiple sequence alignment.
- Published in:
- Bioinformatics, 2000, v. 16, n. 9, p. 808, doi. 10.1093/bioinformatics/16.9.808
- By:
- Publication type:
- Article
NFDI4Microbiota - national research data infrastructure for microbiota research.
- Published in:
- Research Ideas & Outcome Journal, 2023, p. 1, doi. 10.3897/rio.9.e110501
- By:
- Publication type:
- Article
Computing the family-free DCJ similarity.
- Published in:
- 2018
- By:
- Publication type:
- Abstract
Identifying gene clusters by discovering common intervals in indeterminate strings.
- Published in:
- BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S6-S2
- By:
- Publication type:
- Article
The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence.
- Published in:
- BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-728
- By:
- Publication type:
- Article
The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into generegulatorynetworks contributing to virulence.
- Published in:
- BMC Genomics, 2010, v. 11, p. 728, doi. 10.1186/1471-2164-11-728
- By:
- Publication type:
- Article
ReadXplorer - Visualization and Analysis of Mapped Sequences.
- Published in:
- Bioinformatics, 2014, v. 30, n. 16, p. 1, doi. 10.1093/bioinformatics/btu205
- By:
- Publication type:
- Article
BiPACE 2D—graph-based multiple alignment for comprehensive 2D gas chromatography-mass spectrometry.
- Published in:
- Bioinformatics, 2014, v. 30, n. 7, p. 988, doi. 10.1093/bioinformatics/btt738
- By:
- Publication type:
- Article
UniMoG—a unifying framework for genomic distance calculation and sorting based on DCJ.
- Published in:
- Bioinformatics, 2012, v. 28, n. 19, p. 2509, doi. 10.1093/bioinformatics/bts440
- By:
- Publication type:
- Article