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Analysis and prediction of protein β-sheet structures by a combinatorial approach.
- Published in:
- Nature, 1980, v. 285, n. 5764, p. 378, doi. 10.1038/285378a0
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- Publication type:
- Article
AMBIENT: Active Modules for Bipartite Networks - using high-throughput transcriptomic data to dissect metabolic response.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-26
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- Article
Structure of an XRCC1 BRCT domain: a new protein-protein interaction module.
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- EMBO Journal, 1998, v. 17, n. 21, p. 6404, doi. 10.1093/emboj/17.21.6404
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- Article
Prediction of protein structure from amino acid sequence.
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- Nature, 1978, v. 271, n. 5640, p. 15, doi. 10.1038/271015a0
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- Publication type:
- Article
Missense3D-DB web catalogue: an atom-based analysis and repository of 4M human protein-coding genetic variants.
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- Human Genetics, 2021, v. 140, n. 5, p. 805, doi. 10.1007/s00439-020-02246-z
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- Publication type:
- Article
A polygenic biomarker to identify patients with severe hypercholesterolemia of polygenic origin.
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- Molecular Genetics & Genomic Medicine, 2020, v. 8, n. 6, p. 1, doi. 10.1002/mgg3.1248
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- Publication type:
- Article
k-SLAM: accurate and ultra-fast taxonomic classification and gene identification for large metagenomic data sets.
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- Nucleic Acids Research, 2017, v. 45, n. 4, p. 1649, doi. 10.1093/nar/gkw1248
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- Article
CombFunc: predicting protein function using heterogeneous data sources.
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- Nucleic Acids Research, 2012, v. 40, p. W466, doi. 10.1093/nar/gks489
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- Publication type:
- Article
3DLigandSite: predicting ligand-binding sites using similar structures.
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- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W469, doi. 10.1093/nar/gkq406
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- Publication type:
- Article
The SARS-CoV-2 infections in Thailand: Analysis of spike mutations complemented by protein structure insights.
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- Songklanakarin Journal of Science & Technology, 2022, v. 44, n. 5, p. 1201
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- Publication type:
- Article
Genetic variation in SCN10A influences cardiac conduction.
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- Nature Genetics, 2010, v. 42, n. 2, p. 149, doi. 10.1038/ng.516
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- Publication type:
- Article
Genome-wide association study identifies variants in TMPRSS6 associated with hemoglobin levels.
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- Nature Genetics, 2009, v. 41, n. 11, p. 1170, doi. 10.1038/ng.462
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- Publication type:
- Article
The 4th meeting on the Critical Assessment of Predicted Interaction (CAPRI) held at the Mare Nostrum, Barcelona.
- Published in:
- Proteins, 2010, v. 78, n. 15, p. 3065, doi. 10.1002/prot.22801
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- Article
Prediction of ligand binding sites using homologous structures and conservation at CASP8.
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- Proteins, 2009, v. 77, n. S9, p. 147, doi. 10.1002/prot.22513
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- Publication type:
- Article
Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre.
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- Proteins, 2008, v. 70, n. 3, p. 611, doi. 10.1002/prot.21688
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- Publication type:
- Article
A general approach for developing system-specific functions to score protein-ligand docked complexes using support vector inductive logic programming.
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- Proteins, 2007, v. 69, n. 4, p. 823, doi. 10.1002/prot.21782
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- Publication type:
- Article
Prediction of the conformation and geometry of loops in globular proteins: Testing ArchDB, a structural classification of loops.
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- Proteins, 2005, v. 60, n. 4, p. 746, doi. 10.1002/prot.20516
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- Publication type:
- Article
CAPRI: A Critical Assessment of PRedicted Interactions.
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- Proteins, 2003, v. 52, n. 1, p. 2, doi. 10.1002/prot.10381
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- Publication type:
- Article
Prediction of electrostatic effects of engineering of protein charges.
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- Nature, 1987, v. 330, n. 6143, p. 86, doi. 10.1038/330086a0
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- Article
AIDS vaccine predictions.
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- Nature, 1987, v. 326, n. 6113, p. 549, doi. 10.1038/326549c0
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- Publication type:
- Article
Incorporating Virtual Reactions into a Logic-based Ligand-based Virtual Screening Method to Discover New Leads.
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- Molecular Informatics, 2015, v. 34, n. 9, p. 615, doi. 10.1002/minf.201400162
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- Publication type:
- Article
Integrating logic-based machine learning and virtual screening to discover new drugs.
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- 2012
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- Publication type:
- Abstract
AlloPred: prediction of allosteric pockets on proteins using normal mode perturbation analysis.
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- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0771-1
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- Publication type:
- Article
Automated identification of protein-ligand interaction features using Inductive Logic Programming: a hexose binding case study.
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- 2012
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- Publication type:
- Case Study
Phylotranscriptomic Insights into the Diversification of Endothermic Thunnus Tunas.
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- Molecular Biology & Evolution, 2019, v. 36, n. 1, p. 84, doi. 10.1093/molbev/msy198
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- Article
ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology.
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- Plant Cell, 2017, v. 29, n. 8, p. 1806, doi. 10.1105/tpc.17.00073
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- Article
Isolation of a small molecule inhibitor of DNA base excision repair.
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- Nucleic Acids Research, 2005, v. 33, n. 15, p. 4711, doi. 10.1093/nar/gki781
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- Publication type:
- Article
ArchDB: automated protein loop classification as a tool for structural genomics.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d185
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- Publication type:
- Article
3D‐GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d245
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- Publication type:
- Article
Support vector inductive logic programming outperforms the naive Bayes classifier and inductive logic programming for the classification of bioactive chemical compounds.
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- Journal of Computer-Aided Molecular Design, 2007, v. 21, n. 5, p. 269, doi. 10.1007/s10822-007-9113-3
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- Publication type:
- Article
In Silico Analysis of the Small Molecule Content of Outer Membrane Vesicles Produced by Bacteroides thetaiotaomicron Indicates an Extensive Metabolic Link between Microbe and Host.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.02440
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- Publication type:
- Article
3D-Garden: a system for modelling protein-protein complexes based on conformational refinement of ensembles generated with the marching cubes algorithm.
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- Bioinformatics, 2008, v. 24, n. 9, p. 1137, doi. 10.1093/bioinformatics/btn093
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- Article
ConFunc--functional annotation in the twilight zone.
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- Bioinformatics, 2008, v. 24, n. 6, p. 798, doi. 10.1093/bioinformatics/btn037
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- Article
Prediction of viable circular permutants using a graph theoretic approach.
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- Bioinformatics, 2006, v. 22, n. 11, p. 1353
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- Publication type:
- Article
Capturing expert knowledge with argumentation: a case study in bioinformatics.
- Published in:
- Bioinformatics, 2006, v. 22, n. 8, p. 924, doi. 10.1093/bioinformatics/btl018
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- Publication type:
- Article
3DLigandSite: structure-based prediction of protein–ligand binding sites.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. W1, p. W13, doi. 10.1093/nar/gkac250
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- Publication type:
- Article
Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.
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- Nucleic Acids Research, 2020, v. 48, n. D1, p. D314, doi. 10.1093/nar/gkz967
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- Publication type:
- Article
Properties of human genes guided by their enrichment in rare and common variants.
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- Human Mutation, 2018, v. 39, n. 3, p. 365, doi. 10.1002/humu.23377
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- Article
Landscape of Pleiotropic Proteins Causing Human Disease: Structural and System Biology Insights.
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- Human Mutation, 2017, v. 38, n. 3, p. 289, doi. 10.1002/humu.23155
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- Publication type:
- Article
Three-Dimensional Model of Human Nicotinamide Nucleotide Transhydrogenase (NNT) and Sequence-Structure Analysis of its Disease-Causing Variations.
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- Human Mutation, 2016, v. 37, n. 10, p. 1074, doi. 10.1002/humu.23046
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- Publication type:
- Article
Exploring the cellular basis of human disease through a large-scale mapping of deleterious genes to cell types.
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- Genome Medicine, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13073-015-0212-9
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- Publication type:
- Article
Exploring the cellular basis of human disease through a large-scale mapping of deleterious genes to cell types.
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- Genome Medicine, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13073-015-0212-9
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- Publication type:
- Article
The Phyre2 web portal for protein modeling, prediction and analysis.
- Published in:
- Nature Protocols, 2015, v. 10, n. 6, p. 845, doi. 10.1038/nprot.2015.053
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- Article
The Discovery of a Highly Selective 5,6,7,8-Tetrahydrobenzo[4,5]thieno[2,3- d]pyrimidin-4(3 H)-one SIRT2 Inhibitor that is Neuroprotective in an in vitro Parkinson's Disease Model.
- Published in:
- ChemMedChem, 2015, v. 10, n. 1, p. 69, doi. 10.1002/cmdc.201402431
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- Publication type:
- Article
Application of docking methodologies to modeled proteins.
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- Proteins, 2020, v. 88, n. 9, p. 1180, doi. 10.1002/prot.25889
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- Publication type:
- Article
Modeling protein interactions and complexes in CAPRI: Seventh CAPRI evaluation meeting, April 3‐5 EMBL‐EBI, Hinxton, UK.
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- Proteins, 2020, v. 88, n. 8, p. 913, doi. 10.1002/prot.25883
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- Publication type:
- Article
Proteomic analysis of the Plasmodium male gamete reveals the key role for glycolysis in flagellar motility.
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- Malaria Journal, 2014, v. 13, n. 1, p. 315, doi. 10.1186/1475-2875-13-315
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- Publication type:
- Article
Identification of disease-associated loci using machine learning for genotype and network data integration.
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- Bioinformatics, 2019, v. 35, n. 24, p. 5182, doi. 10.1093/bioinformatics/btz310
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- Publication type:
- Article
PhenoRank: reducing study bias in gene prioritization through simulation.
- Published in:
- Bioinformatics, 2018, v. 34, n. 12, p. 2087, doi. 10.1093/bioinformatics/bty028
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- Article
PINALOG: a novel approach to align protein interaction networks—implications for complex detection and function prediction.
- Published in:
- Bioinformatics, 2012, v. 28, n. 9, p. 1239, doi. 10.1093/bioinformatics/bts119
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- Publication type:
- Article