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Connecting omics signatures and revealing biological mechanisms with iLINCS.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32205-3
By:
- Pilarczyk, Marcin;
- Fazel-Najafabadi, Mehdi;
- Kouril, Michal;
- Shamsaei, Behrouz;
- Vasiliauskas, Juozas;
- Niu, Wen;
- Mahi, Naim;
- Zhang, Lixia;
- Clark, Nicholas A.;
- Ren, Yan;
- White, Shana;
- Karim, Rashid;
- Xu, Huan;
- Biesiada, Jacek;
- Bennett, Mark F.;
- Davidson, Sarah E.;
- Reichard, John F.;
- Roberts, Kurt;
- Stathias, Vasileios;
- Koleti, Amar
Publication type:
Article
DrugCentral 2018: an update.
Published in:
Nucleic Acids Research, 2019, v. 47, n. D1, p. D963, doi. 10.1093/nar/gky963
By:
- Ursu, Oleg;
- Holmes, Jayme;
- Bologa, Cristian G;
- Yang, Jeremy J;
- Mathias, Stephen L;
- Stathias, Vasileios;
- Nguyen, Dac-Trung;
- Schürer, Stephan;
- Oprea, Tudor
Publication type:
Article
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data.
Published in:
Nucleic Acids Research, 2018, v. 46, n. D1, p. D558, doi. 10.1093/nar/gkx1063
By:
- Koleti, Amar;
- Terryn, Raymond;
- Stathias, Vasileios;
- Chung, Caty;
- Cooper, Daniel J;
- Turner, John P;
- Vidović, Dušica;
- Forlin, Michele;
- Kelley, Tanya T;
- D'Urso, Alessandro
Publication type:
Article
Drug target ontology to classify and integrate drug discovery data.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0161-x
By:
- Yu Lin;
- Mehta, Saurabh;
- Küçük-McGinty, Hande;
- Turner, John Paul;
- Vidovic, Dusica;
- Forlin, Michele;
- Koleti, Amar;
- Nguyen, Dac-Trung;
- Jensen, Lars Juhl;
- Guha, Rajarshi;
- Mathias, Stephen L.;
- Ursu, Oleg;
- Stathias, Vasileios;
- Duan, Jianbin;
- Nabizadeh, Nooshin;
- Chung, Caty;
- Mader, Christopher;
- Visser, Ubbo;
- Yang, Jeremy J.;
- Bologa, Cristian G.
Publication type:
Article
Identifying Glioblastoma Gene Networks Based on Hypergeometric Test Analysis.
Published in:
PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0115842
By:
- Stathias, Vasileios;
- Pastori, Chiara;
- Griffin, Tess Z.;
- Komotar, Ricardo;
- Clarke, Jennifer;
- Zhang, Ming;
- Ayad, Nagi G.
Publication type:
Article
Time series modeling of cell cycle exit identifies Brd4 dependent regulation of cerebellar neurogenesis.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10799-5
By:
- Penas, Clara;
- Maloof, Marie E.;
- Stathias, Vasileios;
- Long, Jun;
- Tan, Sze Kiat;
- Mier, Jose;
- Fang, Yin;
- Valdes, Camilo;
- Rodriguez-Blanco, Jezabel;
- Chiang, Cheng-Ming;
- Robbins, David J.;
- Liebl, Daniel J.;
- Lee, Jae K.;
- Hatten, Mary E.;
- Clarke, Jennifer;
- Ayad, Nagi G.
Publication type:
Article
Drug and disease signature integration identifies synergistic combinations in glioblastoma.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07659-z
By:
- Stathias, Vasileios;
- Jermakowicz, Anna M.;
- Maloof, Marie E.;
- Forlin, Michele;
- Walters, Winston;
- Suter, Robert K.;
- Durante, Michael A.;
- Williams, Sion L.;
- Harbour, J. William;
- Volmar, Claude-Henry;
- Lyons, Nicholas J.;
- Wahlestedt, Claes;
- Graham, Regina M.;
- Ivan, Michael E.;
- Komotar, Ricardo J.;
- Sarkaria, Jann N.;
- Subramanian, Aravind;
- Golub, Todd R.;
- Schürer, Stephan C.;
- Ayad, Nagi G.
Publication type:
Article
Spatial Transcriptomics Identifies Expression Signatures Specific to Lacrimal Gland Adenoid Cystic Carcinoma Cells.
Published in:
Cancers, 2023, v. 15, n. 12, p. 3211, doi. 10.3390/cancers15123211
By:
- Moeyersoms, Acadia H. M.;
- Gallo, Ryan A.;
- Zhang, Michelle G.;
- Stathias, Vasileios;
- Maeng, Michelle M.;
- Owens, Dawn;
- Abou Khzam, Rayan;
- Sayegh, Yoseph;
- Maza, Cynthia;
- Dubovy, Sander R.;
- Tse, David T.;
- Pelaez, Daniel
Publication type:
Article
Novel Curcumin Inspired Bis-Chalcone Promotes Endoplasmic Reticulum Stress and Glioblastoma Neurosphere Cell Death.
Published in:
Cancers, 2019, v. 11, n. 3, p. 357, doi. 10.3390/cancers11030357
By:
- Sansalone, Lorenzo;
- Veliz, Eduardo A.;
- Myrthil, Nadia G.;
- Stathias, Vasileios;
- Walters, Winston;
- Torrens, Ingrid I.;
- Schürer, Stephan C.;
- Vanni, Steven;
- Leblanc, Roger M.;
- Graham, Regina M.
Publication type:
Article
Exploring Genomic Structure Differences and Similarities between the Greek and European HapMap Populations: Implications for Association Studies.
Published in:
Annals of Human Genetics, 2012, v. 76, n. 6, p. 472, doi. 10.1111/j.1469-1809.2012.00730.x
By:
- Stathias, Vasileios;
- Sotiris, Georgios R.;
- Karagiannidis, Iordanis;
- Bourikas, Georgios;
- Martinis, Georgios;
- Papazoglou, Dimitrios;
- Tavridou, Anna;
- Papanas, Nikolaos;
- Maltezos, Efstratios;
- Theodoridis, Marios;
- Vargemezis, Vassilios;
- Manolopoulos, Vangelis G.;
- Speed, William C.;
- Kidd, Judith R.;
- Kidd, Kenneth K.;
- Drineas, Petros;
- Paschou, Peristera
Publication type:
Article
Epigenetic Pathways and Glioblastoma Treatment: Insights From Signaling Cascades.
Published in:
Journal of Cellular Biochemistry, 2015, v. 116, n. 3, p. 351, doi. 10.1002/jcb.24990
By:
- Allen, Bryce K.;
- Stathias, Vasileios;
- Maloof, Marie E.;
- Vidovic, Dusica;
- Winterbottom, Emily F.;
- Capobianco, Anthony J.;
- Clarke, Jennifer;
- Schurer, Stephan;
- Robbins, David J.;
- Ayad, Nagi G.
Publication type:
Article
A multiparametric pharmacogenomic strategy for drug repositioning predicts therapeutic efficacy for glioblastoma cell lines.
Published in:
Neuro-Oncology Advances, 2022, v. 4, n. 1, p. 1, doi. 10.1093/noajnl/vdab192
By:
- Shah, Ashish H.;
- Suter, Robert;
- Gudoor, Pavan;
- Doucet-O'Hare, Tara T.;
- Stathias, Vasileios;
- Cajigas, Iahn;
- de la Fuente, Macarena;
- Govindarajan, Vaidya;
- Morell, Alexis A.;
- Eichberg, Daniel G.;
- Luther, Evan;
- Lu, Victor M.;
- Heiss, John;
- Komotar, Ricardo J.;
- Ivan, Michael E.;
- Schurer, Stephan;
- Gilbert, Mark R.;
- Ayad, Nagi G.
Publication type:
Article
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures.
Published in:
Nucleic Acids Research, 2020, v. 48, n. D1, p. D431, doi. 10.1093/nar/gkz1023
By:
- Stathias, Vasileios;
- Turner, John;
- Koleti, Amar;
- Vidovic, Dusica;
- Cooper, Daniel;
- Fazel-Najafabadi, Mehdi;
- Pilarczyk, Marcin;
- Terryn, Raymond;
- Chung, Caty;
- Umeano, Afoma;
- Clarke, Daniel J B;
- Lachmann, Alexander;
- Evangelista, John Erol;
- Ma'ayan, Avi;
- Medvedovic, Mario;
- Schürer, Stephan C
Publication type:
Article
Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses.
Published in:
BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1981-5
By:
- Ong, Edison;
- Jiangan Xie;
- Zhaohui Ni;
- Qingping Liu;
- Sarntivijai, Sirarat;
- Yu Lin;
- Cooper, Daniel;
- Terryn, Raymond;
- Stathias, Vasileios;
- Chung, Caty;
- Schürer, Stephan;
- Yongqun He
Publication type:
Article
Kinome-Wide Virtual Screening by Multi-Task Deep Learning.
Published in:
International Journal of Molecular Sciences, 2024, v. 25, n. 5, p. 2538, doi. 10.3390/ijms25052538
By:
- Hu, Jiaming;
- Allen, Bryce K.;
- Stathias, Vasileios;
- Ayad, Nagi G.;
- Schürer, Stephan C.
Publication type:
Article

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