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Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions[OPEN].
- Published in:
- Plant Cell, 2020, v. 32, n. 5, p. 1377, doi. 10.1105/tpc.20.00080
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- Publication type:
- Article
Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize.
- Published in:
- Plant Cell, 2016, v. 28, n. 11, p. 2700, doi. 10.1105/tpc.16.00353
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- Publication type:
- Article
Advancing Crop Transformation in the Era of Genome Editing.
- Published in:
- Plant Cell, 2016, v. 28, n. 7, p. 1510, doi. 10.1105/tpc.16.00196
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- Publication type:
- Article
Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes.
- Published in:
- Plant Cell, 2016, v. 28, n. 2, p. 314, doi. 10.1105/tpc.15.00911
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- Publication type:
- Article
Reassess the t Test: Interact with All Your Data via ANOVA.
- Published in:
- Plant Cell, 2015, v. 27, n. 8, p. 2088, doi. 10.1105/tpc.15.00238
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- Publication type:
- Article
Genetic Perturbation of the Maize Methylome.
- Published in:
- Plant Cell, 2014, v. 26, n. 12, p. 4602, doi. 10.1105/tpc.114.133140
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- Publication type:
- Article
Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations.
- Published in:
- Plant Cell, 2013, v. 25, n. 8, p. 2783, doi. 10.1105/tpc.113.114793
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- Publication type:
- Article
Genomic Distribution of Maize Facultative Heterochromatin Marked by Trimethylation of H3K27.
- Published in:
- Plant Cell, 2013, v. 25, n. 3, p. 780, doi. 10.1105/tpc.112.106427
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- Publication type:
- Article
Parent-of-Origin Effects on Gene Expression and DNA Methylation in the Maize Endosperm.
- Published in:
- Plant Cell, 2011, v. 23, n. 12, p. 4221, doi. 10.1105/tpc.111.092668
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- Publication type:
- Article
Minimal evidence for consistent changes in maize DNA methylation patterns following environmental stress.
- Published in:
- Frontiers in Plant Science, 2015, p. 1, doi. 10.3389/fpls.2015.00308
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- Publication type:
- Article
Idea Factory: the Maize Genomes to Fields Initiative.
- Published in:
- Crop Science, 2019, v. 59, n. 4, p. 1406, doi. 10.2135/cropsci2019.02.0071
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- Publication type:
- Article
Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome.
- Published in:
- Genome Biology, 2013, v. 14, n. 6, p. 1, doi. 10.1186/gb-2013-14-6-r58
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- Publication type:
- Article
Genotype-by-environment interactions affecting heterosis in maize.
- Published in:
- PLoS ONE, 2018, v. 13, n. 1, p. 1, doi. 10.1371/journal.pone.0191321
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- Publication type:
- Article
Intragenic Meiotic Crossovers Generate Novel Alleles with Transgressive Expression Levels.
- Published in:
- Molecular Biology & Evolution, 2018, v. 35, n. 11, p. 2762, doi. 10.1093/molbev/msy174
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- Publication type:
- Article
A comparative genomic hybridization approach to study gene copy number variations among chinese hamster cell lines.
- Published in:
- Biotechnology & Bioengineering, 2017, v. 114, n. 8, p. 1903, doi. 10.1002/bit.26311
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- Publication type:
- Article
CHH DNA methylation increases at 24‐PHAS loci depend on 24‐nt phased small interfering RNAs in maize meiotic anthers.
- Published in:
- New Phytologist, 2021, v. 229, n. 5, p. 2984, doi. 10.1111/nph.17060
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- Publication type:
- Article
A novel active transposon creates allelic variation through altered translation rate to influence protein abundance.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 2, p. 595, doi. 10.1093/nar/gkac1195
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- Publication type:
- Article
Modeling chromatin state from sequence across angiosperms using recurrent convolutional neural networks.
- Published in:
- Plant Genome, 2022, v. 15, n. 3, p. 1, doi. 10.1002/tpg2.20249
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- Publication type:
- Article
Population-level analysis reveals the widespread occurrence and phenotypic consequence of DNA methylation variation not tagged by genetic variation in maize.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1859-0
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- Publication type:
- Article
Profiling expression changes caused by a segmental aneuploid in maize.
- Published in:
- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-7
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- Publication type:
- Article
Mutator transposon insertions within maize genes often provide a novel outward reading promoter.
- Published in:
- Genetics, 2023, v. 225, n. 3, p. 1, doi. 10.1093/genetics/iyad171
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- Publication type:
- Article
Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons.
- Published in:
- Genetics, 2021, v. 217, n. 1, p. 1, doi. 10.1093/genetics/iyaa003
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- Publication type:
- Article
Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize.
- Published in:
- Genetics, 2019, v. 213, n. 1, p. 143, doi. 10.1534/genetics.119.302378
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- Publication type:
- Article
Heritable Epigenomic Changes to the Maize Methylome Resulting from Tissue Culture.
- Published in:
- Genetics, 2018, v. 209, n. 4, p. 983, doi. 10.1534/genetics.118.300987
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- Publication type:
- Article
Inheritance Patterns and Stability of DNA Methylation Variation in Maize Near-Isogenic Lines.
- Published in:
- Genetics, 2014, v. 196, n. 3, p. 667, doi. 10.1534/genetics.113.158980
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- Publication type:
- Article
Genome‐wide loss of CHH methylation with limited transcriptome changes in Setaria viridis DOMAINS REARRANGED METHYLTRANSFERASE (DRM) mutants.
- Published in:
- Plant Journal, 2022, v. 111, n. 1, p. 103, doi. 10.1111/tpj.15781
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- Publication type:
- Article
Single‐parent expression drives dynamic gene expression complementation in maize hybrids.
- Published in:
- Plant Journal, 2021, v. 105, n. 1, p. 93, doi. 10.1111/tpj.15042
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- Publication type:
- Article
Optimization of multiplexed CRISPR/Cas9 system for highly efficient genome editing in Setaria viridis.
- Published in:
- Plant Journal, 2020, v. 104, n. 3, p. 828, doi. 10.1111/tpj.14949
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- Publication type:
- Article
Transposable elements contribute to dynamic genome content in maize.
- Published in:
- Plant Journal, 2019, v. 100, n. 5, p. 1052, doi. 10.1111/tpj.14489
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- Publication type:
- Article
The limited role of differential fractionation in genome content variation and function in maize ( Zea mays L.) inbred lines.
- Published in:
- Plant Journal, 2018, v. 93, n. 1, p. 131, doi. 10.1111/tpj.13765
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- Publication type:
- Article
Natural variation for gene expression responses to abiotic stress in maize.
- Published in:
- Plant Journal, 2017, v. 89, n. 4, p. 706, doi. 10.1111/tpj.13414
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- Publication type:
- Article
Whole-genome variation of transposable element insertions in a maize diversity panel.
- Published in:
- G3: Genes | Genomes | Genetics, 2021, v. 11, n. 10, p. 1, doi. 10.1093/g3journal/jkab238
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- Article
Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes.
- Published in:
- G3: Genes | Genomes | Genetics, 2021, v. 11, n. 8, p. 1, doi. 10.1093/g3journal/jkab190
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- Publication type:
- Article
A capture-based assay for detection and characterization of transposon polymorphisms in maize.
- Published in:
- G3: Genes | Genomes | Genetics, 2021, v. 11, n. 7, p. 1, doi. 10.1093/g3journal/jkab138
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- Publication type:
- Article
Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize.
- Published in:
- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 11, p. 3673, doi. 10.1534/g3.119.400431
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- Publication type:
- Article
Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways.
- Published in:
- G3: Genes | Genomes | Genetics, 2018, v. 8, n. 6, p. 1921, doi. 10.1534/g3.118.200284
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- Publication type:
- Article
The repetitive landscape of the 5100 Mbp barley genome.
- Published in:
- Mobile DNA, 2017, v. 8, p. 1, doi. 10.1186/s13100-017-0102-3
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- Publication type:
- Article
Comparative population genomics of maize domestication and improvement.
- Published in:
- Nature Genetics, 2012, v. 44, n. 7, p. 808, doi. 10.1038/ng.2309
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- Publication type:
- Article
Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias.
- Published in:
- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3194-0
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- Publication type:
- Article
Correction: Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress.
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- 2015
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- Publication type:
- Correction Notice
Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress.
- Published in:
- PLoS Genetics, 2015, v. 11, n. 1, p. 1, doi. 10.1371/journal.pgen.1004915
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- Publication type:
- Article
Mendelian and Non-Mendelian Regulation of Gene Expression in Maize.
- Published in:
- PLoS Genetics, 2013, v. 9, n. 1, p. 1, doi. 10.1371/journal.pgen.1003202
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- Publication type:
- Article
Spreading of Heterochromatin Is Limited to Specific Families of Maize Retrotransposons.
- Published in:
- PLoS Genetics, 2012, v. 8, n. 12, p. 1, doi. 10.1371/journal.pgen.1003127
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- Publication type:
- Article
Heritable Epigenetic Variation among Maize Inbreds.
- Published in:
- PLoS Genetics, 2011, v. 7, n. 11, p. 1, doi. 10.1371/journal.pgen.1002372
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- Publication type:
- Article
Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content.
- Published in:
- PLoS Genetics, 2009, v. 5, n. 11, p. 1, doi. 10.1371/journal.pgen.1000734
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- Publication type:
- Article
Using multiple reference genomes to identify and resolve annotation inconsistencies.
- Published in:
- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6696-8
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- Publication type:
- Article
Evolutionary and functional genomics of DNA methylation in maize domestication and improvement.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19333-4
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- Publication type:
- Article
Genome-wide nucleotide patterns and potential mechanisms of genome divergence following domestication in maize and soybean.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1683-6
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- Publication type:
- Article
Correction to: Genome-wide discovery and characterization of maize long non-coding RNAs.
- Published in:
- Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1508-z
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- Publication type:
- Article
Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize.
- Published in:
- Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1273-4
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- Publication type:
- Article