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Spike Protein Fusion Peptide and Feline Coronavirus Virulence.
Published in:
Emerging Infectious Diseases, 2012, v. 18, n. 7, p. 1089, doi. 10.3201/eid1807.120143
By:
- Hui-Wen Chang;
- Egberink, Herman F.;
- Halpin, Rebecca;
- Spiro, David J.;
- Rottier, Peter J. M.
Publication type:
Article
Genome analysis linking recent European and African influenza (H5N1) viruses.
Published in:
2007
By:
- Salzberg, Steven L.;
- Kingsford, Carl;
- Cattoli, Giovanni;
- Spiro, David J.;
- Janies, Daniel A.;
- Aly, Mona Mehrez;
- Brown, Ian H.;
- Couacy-Hymann, Emmanuel;
- De Mia, Gian Mario;
- Do Huu Dung;
- Guercio, Annalisa;
- Joannis, Tony;
- Ali, Ali Safar Maken;
- Osmani, Azizullah;
- Padalino, Iolanda;
- Saad, Magdi D.;
- Savic, Vladimir;
- Sengamalay, Naomi A.;
- Yingst, Samuel;
- Zaborsky, Jennifer
Publication type:
journal article
Molecular Signature of High Yield (Growth) Influenza A Virus Reassortants Prepared as Candidate Vaccine Seeds.
Published in:
PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0065955
By:
- Ramanunninair, Manojkumar;
- Le, Jianhua;
- Onodera, Shiroh;
- Fulvini, Andrew A.;
- Pokorny, Barbara A.;
- Silverman, Jeanmarie;
- Devis, Rene;
- Arroyo, Jennifer M.;
- He, Yu;
- Boyne, Alex;
- Bera, Jayati;
- Halpin, Rebecca;
- Hine, Erin;
- Spiro, David J.;
- Bucher, Doris
Publication type:
Article
Genomic and Protein Structural Maps of Adaptive Evolution of Human Influenza A Virus to Increased Virulence in the Mouse.
Published in:
PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0021740
By:
- Ping, Jihui;
- Keleta, Liya;
- Forbes, Nicole E.;
- Dankar, Samar;
- Stecho, William;
- Tyler, Shaun;
- Zhou, Yan;
- Babiuk, Lorne;
- Weingartl, Hana;
- Halpin, Rebecca A.;
- Boyne, Alex;
- Bera, Jayati;
- Hostetler, Jessicah;
- Fedorova, Nadia B.;
- Proudfoot, Katie;
- Katzel, Dan A.;
- Stockwell, Tim B.;
- Ghedin, Elodie;
- Spiro, David J.;
- Brown, Earl G.
Publication type:
Article
Metagenomic Analysis of RNA Viruses in a Fresh Water Lake.
Published in:
PLoS ONE, 2009, v. 4, n. 9, p. 1, doi. 10.1371/journal.pone.0007264
By:
- Djikeng, Appolinaire;
- Kuzmickas, Ryan;
- Anderson, Norman G.;
- Spiro, David J.
Publication type:
Article
Targeted early chest CT in COVID-19 outbreaks as diagnostic tool for containment of the pandemic-A multinational opinion.
Published in:
2020
By:
- Amalou, Amel;
- Türkbey, Barış;
- Sanford, Tom;
- Harmon, Stephanie;
- Türkbey, Evrim B.;
- Sheng Xu;
- Peng An;
- Carrafiello, Gianpaolo;
- Cariati, Maurizio;
- Patella, Francesca;
- Obinata, Hirofumi;
- Hitoshi Mori;
- Kaiyuan Sun;
- Spiro, David J.;
- Suh, Robert;
- Amalou, Hayet;
- Wood, Bradford J.;
- Xu, Sheng;
- An, Peng;
- Mori, Hitoshi
Publication type:
journal article
Deep Sequencing Reveals Mixed Infection with 2009 Pandemic Influenza A (H1N1) Virus Strains and the Emergence of Oseltamivir Resistance.
Published in:
Journal of Infectious Diseases, 2011, v. 203, n. 2, p. 168, doi. 10.1093/infdis/jiq040
By:
- Ghedin, Elodie;
- Laplante3, Jennifer;
- DePasse, Jay;
- Wentworth, David E.;
- Santos, Roberto P.;
- Lepow, Martha L.;
- Porter, Joanne;
- Stellrecht, Kathleen;
- Xudong Lin;
- Operario, Darwin;
- Griesemer, Sara;
- Fitch, Adam;
- Halpin, Rebecca A.;
- Stockwell, Timothy B.;
- Spiro, David J.;
- Holmes, Edward C.;
- George, Kirsten St.
Publication type:
Article
Viral genome sequencing by random priming methods.
Published in:
BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-5
By:
- Djikeng, Appolinaire;
- Halpin, Rebecca;
- Kuzmickas, Ryan;
- DePasse, Jay;
- Feldblyum, Jeremy;
- Sengamalay, Naomi;
- Afonso, Claudio;
- Xinsheng Zhang;
- Anderson, Norman G.;
- Ghedin, Elodie;
- Spiro, David J.
Publication type:
Article
Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds.
Published in:
Ecology Letters, 2012, v. 15, n. 1, p. 24, doi. 10.1111/j.1461-0248.2011.01703.x
By:
- Lam, Tommy Tsan-Yuk;
- Ip, Hon S.;
- Ghedin, Elodie;
- Wentworth, David E.;
- Halpin, Rebecca A.;
- Stockwell, Timothy B.;
- Spiro, David J.;
- Dusek, Robert J.;
- Bortner, James B.;
- Hoskins, Jenny;
- Bales, Bradley D.;
- Yparraguirre, Dan R.;
- Holmes, Edward C.
Publication type:
Article
ANDES: Statistical tools for the ANalyses of DEep Sequencing.
Published in:
BMC Research Notes, 2010, v. 3, p. 199, doi. 10.1186/1756-0500-3-199
By:
- Li, Kelvin;
- Venter, Eli;
- Yooseph, Shibu;
- Stockwell, Timothy B.;
- Eckerle, Lance D.;
- Denison, Mark R.;
- Spiro, David J.;
- Methé, Barbara A.
Publication type:
Article
Molecular Epidemiology of A/H3N2 and A/H1N1 Influenza Virus during a Single Epidemic Season in the United States.
Published in:
PLoS Pathogens, 2008, v. 4, n. 8, p. 1, doi. 10.1371/journal.ppat.1000133
By:
- Nelson, Martha I.;
- Edelman, Laurel;
- Spiro, David J.;
- Boyne, Alex R.;
- Bera, Jayati;
- Halpin, Rebecca;
- Ghedin, Elodie;
- Miller, Mark A.;
- Simonsen, Lone;
- Viboud, Cecile;
- Holmes, Edward C.
Publication type:
Article
The Evolutionary Genetics and Emergence of Avian Influenza Viruses in Wild Birds.
Published in:
PLoS Pathogens, 2008, v. 4, n. 5, p. 1, doi. 10.1371/journal.ppat.1000076
By:
- Dugan, Vivien G.;
- Chen, Rubing;
- Spiro, David J.;
- Sengamalay, Naomi;
- Zaborsky, Jennifer;
- Ghedin, Elodie;
- Nolting, Jacqueline;
- Swayne, David E.;
- Runstadler, Jonathan A.;
- Happ, George M.;
- Senne, Dennis A.;
- Ruixue Wang;
- Slemons, Richard D.;
- Holmes, Edward C.;
- Taubenberger, Jeffery K.
Publication type:
Article
Multiple Reassortment Events in the Evolutionary History of H1N1 Influenza A Virus Since 1918.
Published in:
PLoS Pathogens, 2008, v. 4, n. 2, p. 1, doi. 10.1371/journal.ppat.1000012
By:
- Nelson, Martha I.;
- Viboud, Cécile;
- Simonsen, Lone;
- Bennett, Ryan T.;
- Griesemer, Sara B.;
- St. George, Kirsten;
- Taylor, Jill;
- Spiro, David J.;
- Sengamalay, Naomi A.;
- Ghedin, Elodie;
- Taubenberger, Jeffery K.;
- Holmes, Edward C.
Publication type:
Article
Stochastic Processes Are Key Determinants of Short-Term Evolution in Influenza A Virus.
Published in:
PLoS Pathogens, 2006, v. 2, n. 12, p. 1144, doi. 10.1371/journal.ppat.0020125
By:
- Nelson, Martha I.;
- Simonsen, Lone;
- Viboud, Cecile;
- Miller, Mark A.;
- Taylor, Jill;
- St. George, Kirsten;
- Griesemer, Sara B.;
- Ghedi, Elodie;
- Sengamalay, Naomi A.;
- Spiro, David J.;
- Volkov, Igor;
- Grenfell, Bryan T.;
- Lipman, David J.;
- Taubenberger, Jeffery K.;
- Holmes, Edward C.
Publication type:
Article
Origins and Evolution of Seasonal Human Coronaviruses.
Published in:
Viruses (1999-4915), 2022, v. 14, n. 7, p. N.PAG, doi. 10.3390/v14071551
By:
- Otieno, James R.;
- Cherry, Joshua L.;
- Spiro, David J.;
- Nelson, Martha I.;
- Trovão, Nídia S.
Publication type:
Article
Infidelity of SARS-CoV Nsp14-Exonuclease Mutant Virus Replication Is Revealed by Complete Genome Sequencing.
Published in:
PLoS Pathogens, 2010, v. 6, n. 5, p. 1, doi. 10.1371/journal.ppat.1000896
By:
- Eckerle, Lance D.;
- Becker, Michelle M.;
- Halpin, Rebecca A.;
- Kelvin Li;
- Eli Venter;
- Xiaotao Lu;
- Scherbakova, Sana;
- Graham, Rachel L.;
- Baric, Ralph S.;
- Stockwell, Timothy B.;
- Spiro, David J.;
- Denison, Mark R.
Publication type:
Article
Evolutionary Dynamics of Human Rotaviruses: Balancing Reassortment with Preferred Genome Constellations.
Published in:
PLoS Pathogens, 2009, v. 5, n. 10, p. 1, doi. 10.1371/journal.ppat.1000634
By:
- McDonald, Sarah M.;
- Matthijnssens, Jelle;
- McAllen, John K.;
- Hine, Erin;
- Overton, Larry;
- Shiliang Wang;
- Lemey, Philippe;
- Zeller, Mark;
- Van Ranst, Marc;
- Spiro, David J.;
- Patton, John T.
Publication type:
Article
Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution.
Published in:
Nature, 2005, v. 437, n. 7062, p. 1162, doi. 10.1038/nature04239
By:
- Ghedin, Elodie;
- Sengamalay, Naomi A.;
- Shumway, Martin;
- Zaborsky, Jennifer;
- Feldblyum, Tamara;
- Subbu, Vik;
- Spiro, David J.;
- Sitz, Jeff;
- Koo, Hean;
- Bolotov, Pavel;
- Dernovoy, Dmitry;
- Tatusova, Tatiana;
- Yiming Bao;
- St George, Kirsten;
- Taylor, Jill;
- Lipman, David J.;
- Fraser, Claire M.;
- Taubenberger, Jeffery K.;
- Salzberg, Steven L.
Publication type:
Article
Getting to the Heart of Influenza.
Published in:
Science Translational Medicine, 2013, v. 5, n. 191, p. 1, doi. 10.1126/scitranslmed.3006735
By:
- Yewdell, Jonathan W.;
- Spiro, David J.;
- Golding, Hana;
- Quill, Helen;
- Mittelman, Abraham;
- Nabel, Gary J.
Publication type:
Article
Short Report : Dual Infection of Novel Influenza Viruses A/H1N1 and A/H3N2 in a Cluster of Cambodian Patients.
Published in:
American Journal of Tropical Medicine & Hygiene, 2011, v. 85, n. 5, p. 961, doi. 10.4269/ajtmh.2011.11-0098
By:
- Myers, Christopher A.;
- Kasper, Matthew R.;
- Yasuda, Chadwick Y.;
- Savuth, Chin;
- Spiro, David J.;
- Halpin, Rebecca;
- Faix, Dennis J.;
- Coon, Robert;
- Putnam, Shannon D.;
- Wierzba, Thomas F.;
- Blair, Patrick J.
Publication type:
Article
Beyond clinical trials: Evolutionary and epidemiological considerations for development of a universal influenza vaccine.
Published in:
PLoS Pathogens, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.ppat.1008583
By:
- Viboud, Cécile;
- Gostic, Katelyn;
- Nelson, Martha I.;
- Price, Graeme E.;
- Perofsky, Amanda;
- Sun, Kaiyuan;
- Sequeira Trovão, Nídia;
- Cowling, Benjamin J.;
- Epstein, Suzanne L.;
- Spiro, David J.
Publication type:
Article
Projecting the SARS-CoV-2 transition from pandemicity to endemicity: Epidemiological and immunological considerations.
Published in:
PLoS Pathogens, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.ppat.1010591
By:
- Cohen, Lily E.;
- Spiro, David J.;
- Viboud, Cecile
Publication type:
Article

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