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The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model.
- Published in:
- 2004
- By:
- Publication type:
- Report
The spread of the first introns in proto-eukaryotic paralogs.
- Published in:
- Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03426-5
- By:
- Publication type:
- Article
STRING 7—recent developments in the integration and prediction of protein interactions.
- Published in:
- Nucleic Acids Research, 2007, v. 35, p. d358, doi. 10.1093/nar/gkl825
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- Publication type:
- Article
Systematic discovery of analogous enzymes in thiamin biosynthesis.
- Published in:
- Nature Biotechnology, 2003, v. 21, n. 7, p. 790, doi. 10.1038/nbt834
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- Publication type:
- Article
Chromosomal instability by mutations in the novel minor spliceosome component CENATAC.
- Published in:
- EMBO Journal, 2021, v. 40, n. 14, p. 1, doi. 10.15252/embj.2020106536
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- Publication type:
- Article
The phylogeny of C/S1 bZIP transcription factors reveals a shared algal ancestry and the pre-angiosperm translational regulation of S1 transcripts.
- Published in:
- Scientific Reports, 2016, p. 30444, doi. 10.1038/srep30444
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- Publication type:
- Article
DOWNY MILDEW RESISTANT 6 and DMR6- LIKE OXYGENASE 1 are partially redundant but distinct suppressors of immunity in Arabidopsis.
- Published in:
- Plant Journal, 2015, v. 81, n. 2, p. 210, doi. 10.1111/tpj.12719
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- Publication type:
- Article
Bioinformatic Inference of Specific and General Transcription Factor Binding Sites in the Plant Pathogen Phytophthora infestans.
- Published in:
- PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051295
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- Publication type:
- Article
Evaluating Experimental Bias and Completeness in Comparative Phosphoproteomics Analysis.
- Published in:
- PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0023276
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- Publication type:
- Article
Tyrosine Phosphorylation Profiling in FGF-2 Stimulated Human Embryonic Stem Cells.
- Published in:
- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0017538
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- Publication type:
- Article
Increased sucrose levels mediate selective mRNA translation in Arabidopsis.
- Published in:
- BMC Plant Biology, 2014, v. 14, n. 1, p. 306, doi. 10.1186/s12870-014-0306-3
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- Publication type:
- Article
Recurrent sequence evolution after independent gene duplication.
- Published in:
- BMC Evolutionary Biology, 2020, v. 20, n. 1, p. 1, doi. 10.1186/s12862-020-01660-1
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- Publication type:
- Article
Evolutionary dynamics of the kinetochore network in eukaryotes as revealed by comparative genomics.
- Published in:
- EMBO Reports, 2017, v. 18, n. 9, p. 1559, doi. 10.15252/embr.201744102
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- Publication type:
- Article
A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation.
- Published in:
- BMC Genomics, 2006, v. 7, p. 10, doi. 10.1186/1471-2164-7-10
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- Publication type:
- Article
Enrichment of homologs in insignificant BLASThits by co-complex network alignment.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 86, doi. 10.1186/1471-2105-11-86
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- Publication type:
- Article
Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 356, doi. 10.1186/1471-2105-8-356
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- Publication type:
- Article
Orthology prediction at scalable resolution by phylogenetic tree analysis.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 83, doi. 10.1186/1471-2105-8-83
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- Publication type:
- Article
Integrating Phylogenetics With Intron Positions Illuminates the Origin of the Complex Spliceosome.
- Published in:
- Molecular Biology & Evolution, 2023, v. 40, n. 1, p. 1, doi. 10.1093/molbev/msad011
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- Publication type:
- Article
Deciphering the evolution and metabolism of an anammox bacterium from a community genome.
- Published in:
- 2006
- By:
- Publication type:
- Letter
SOMBRERO, BEARSKIN1, and BEARSKIN2 Regulate Root Cap Maturation in Arabidopsis.
- Published in:
- Plant Cell, 2010, v. 22, n. 3, p. 640, doi. 10.1105/tpc.109.072272
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- Publication type:
- Article
Correlation between sequence conservation and the genomic context after gene duplication.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. 22, p. 7176, doi. 10.1093/nar/gki1005
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- Publication type:
- Article
Correlation between sequence conservation and the genomic context after gene duplication.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. 19, p. 6164, doi. 10.1093/nar/gki913
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- Publication type:
- Article
STRING: known and predicted protein–protein associations, integrated and transferred across organisms.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d433
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- Publication type:
- Article
Gene co-regulation is highly conserved in the evolution of eukaryotes and prokaryotes.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. 16, p. 4725, doi. 10.1093/nar/gkh815
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- Publication type:
- Article
STRING: a database of predicted functional associations between proteins.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 1, p. 258, doi. 10.1093/nar/gkg034
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- Publication type:
- Article
Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.
- Published in:
- Nucleic Acids Research, 2000, v. 28, n. 17, p. 3278, doi. 10.1093/nar/28.17.3278
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- Publication type:
- Article
Shared Protein Complex Subunits Contribute to Explaining Disrupted Co-occurrence.
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003124
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- Publication type:
- Article
Cohesive versus Flexible Evolution of Functional Modules in Eukaryotes.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000276
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- Publication type:
- Article
Protein Complex Evolution Does Not Involve Extensive Network Rewiring.
- Published in:
- PLoS Computational Biology, 2008, v. 4, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000132
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- Publication type:
- Article
Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa206
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- Publication type:
- Article
Contribution of the epigenetic mark H3K27me3 to functional divergence after whole genome duplication in Arabidopsis.
- Published in:
- Genome Biology, 2012, v. 13, n. 10, p. 1, doi. 10.1186/gb-2012-13-10-R94
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- Publication type:
- Article
The R-spondin protein family
- Published in:
- Genome Biology, 2012, v. 13, n. 3, p. 242, doi. 10.1186/gb-2012-13-3-242
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- Publication type:
- Article
Increased Sampling and Intracomplex Homologies Favor Vertical Over Horizontal Inheritance of the Dam1 Complex.
- Published in:
- Genome Biology & Evolution, 2023, v. 15, n. 3, p. 1, doi. 10.1093/gbe/evad017
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- Publication type:
- Article
Evolution of Complex Regulation for Cell-Cycle Control.
- Published in:
- Genome Biology & Evolution, 2022, v. 14, n. 5, p. 1, doi. 10.1093/gbe/evac056
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- Publication type:
- Article
Unique Phylogenetic Distributions of the Ska and Dam1 Complexes Support Functional Analogy and Suggest Multiple Parallel Displacements of Ska by Dam1.
- Published in:
- Genome Biology & Evolution, 2017, v. 9, n. 5, p. 1295, doi. 10.1093/gbe/evx088
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- Publication type:
- Article
Small Homologous Blocks in Phytophthora Genomes Do Not Point to an Ancient Whole-Genome Duplication.
- Published in:
- Genome Biology & Evolution, 2014, v. 6, n. 5, p. 1079, doi. 10.1093/gbe/evu081
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- Publication type:
- Article
The Histone Modification H3K27me3 Is Retained after Gene Duplication and Correlates with Conserved Noncoding Sequences in Arabidopsis.
- Published in:
- Genome Biology & Evolution, 2014, v. 6, n. 3, p. 572, doi. 10.1093/gbe/evu040
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- Publication type:
- Article
Reconstruction of Oomycete Genome Evolution Identifies Differences in Evolutionary Trajectories Leading to Present-Day Large Gene Families.
- Published in:
- Genome Biology & Evolution, 2012, v. 4, n. 9, p. 199, doi. 10.1093/gbe/evs003
- By:
- Publication type:
- Article
Reconstruction of Oomycete Genome Evolution Identifies Differences in Evolutionary Trajectories Leading to Present-Day Large Gene Families.
- Published in:
- Genome Biology & Evolution, 2012, v. 4, n. 3, p. 199, doi. 10.1093/gbe/evs003
- By:
- Publication type:
- Article
A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions.
- Published in:
- BMC Biology, 2015, v. 13, p. 1, doi. 10.1186/s12915-015-0222-5
- By:
- Publication type:
- Article
PTRN-1 (CAMSAP) and NOCA-2 (NINEIN) are required for microtubule polarity in Caenorhabditis elegans dendrites.
- Published in:
- PLoS Biology, 2022, v. 20, n. 11, p. 1, doi. 10.1371/journal.pbio.3001855
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- Publication type:
- Article
Signature Genes as a Phylogenomic Tool.
- Published in:
- Molecular Biology & Evolution, 2008, v. 25, n. 8, p. 1659, doi. 10.1093/molbev/msn115
- By:
- Publication type:
- Article
Comparative assessment of large-scale sets of protein—protein interactions.
- Published in:
- Nature, 2002, v. 417, n. 6887, p. 399, doi. 10.1038/nature750
- By:
- Publication type:
- Article
Intracellular signaling in proto-eukaryotes evolves to alleviate regulatory conflicts of endosymbiosis.
- Published in:
- PLoS Computational Biology, 2024, v. 20, n. 2, p. 1, doi. 10.1371/journal.pcbi.1011860
- By:
- Publication type:
- Article
Distinct functions for the paralogous RBM41 and U11/U12-65K proteins in the minor spliceosome.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 7, p. 4037, doi. 10.1093/nar/gkae070
- By:
- Publication type:
- Article
Phylogenetic profiling in eukaryotes: The effect of species, orthologous group, and interactome selection on protein interaction prediction.
- Published in:
- PLoS ONE, 2022, v. 17, n. 4, p. 1, doi. 10.1371/journal.pone.0251833
- By:
- Publication type:
- Article
A Subfamily of Putative Cytokinin Receptors Is Revealed by an Analysis of the Evolution of the Two-Component Signaling System of Plants.
- Published in:
- Plant Physiology, 2014, v. 165, n. 1, p. 227, doi. 10.1104/pp.113.228080
- By:
- Publication type:
- Article
A Domain-Centric Analysis of Oomycete Plant Pathogen Genomes Reveals Unique Protein Organization.
- Published in:
- Plant Physiology, 2011, v. 155, n. 2, p. 628, doi. 10.1104/pp.110.167841
- By:
- Publication type:
- Article
Domestication of self-splicing introns during eukaryogenesis: the rise of the complex spliceosomal machinery.
- Published in:
- Biology Direct, 2017, v. 12, p. 1, doi. 10.1186/s13062-017-0201-6
- By:
- Publication type:
- Article
Origin and evolution of the peroxisomal proteome.
- Published in:
- Biology Direct, 2006, v. 1, p. 8, doi. 10.1186/1745-6150-1-8
- By:
- Publication type:
- Article