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Lung Basal Stem Cells Rapidly Repair DNA Damage Using the Error-Prone Nonhomologous End-Joining Pathway.
- Published in:
- PLoS Biology, 2017, v. 15, n. 1, p. 1, doi. 10.1371/journal.pbio.2000731
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- Article
Microarray background correction: maximum likelihood estimation for the normal-exponential convolution.
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- Biostatistics, 2009, v. 10, n. 2, p. 352, doi. 10.1093/biostatistics/kxn042
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- Article
Microarray background correction: maximum likelihood estimation for the normal-exponential convolution.
- Published in:
- 2009
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- Publication type:
- journal article
Small-sample estimation of negative binomial dispersion, with applications to SAGE data.
- Published in:
- Biostatistics, 2008, v. 9, n. 2, p. 321
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- Publication type:
- Article
A note on modelling cross-correlations: Hyperbolic secant regression.
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- Biometrika, 1994, v. 81, n. 2, p. 396
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- Publication type:
- Article
R code and downstream analysis objects for the scRNA-seq atlas of normal and tumorigenic human breast tissue.
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- Scientific Data, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41597-022-01236-2
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- Publication type:
- Article
Activation of stably silenced genes by recruitment of a synthetic de-methylating module.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33181-4
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- Publication type:
- Article
Molecular dissection of the pea shoot apical meristem*.
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- Journal of Experimental Botany, 2009, v. 60, n. 14, p. 4201, doi. 10.1093/jxb/erp254
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- Article
Extracellular Vesicles in Synovial Fluid from Rheumatoid Arthritis Patients Contain miRNAs with Capacity to Modulate Inflammation.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 4910, doi. 10.3390/ijms22094910
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- Article
Genotype to phenotype: Diet-by-mitochondrial DNA haplotype interactions drive metabolic flexibility and organismal fitness.
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- PLoS Genetics, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pgen.1007735
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- Article
Disruption of the histone acetyltransferase MYST4 leads to a Noonan syndrome-like phenotype and hyperactivated MAPK signaling in humans and mice.
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- 2011
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- Publication type:
- journal article
Adjusted likelihood methods for modelling dispersion in generalized linear models
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- Environmetrics, 1999, v. 10, n. 6, p. 695, doi. 10.1002/(SICI)1099-095X(199911/12)10:6<695::AID-ENV385>3.0.CO;2-M
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- Publication type:
- Article
TRAF2 regulates TNF and NF-κB signalling to suppress apoptosis and skin inflammation independently of Sphingosine kinase 1.
- Published in:
- eLife, 2015, p. 1, doi. 10.7554/eLife.10592
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- Publication type:
- Article
An aspartyl protease defines a novel pathway for export of Toxoplasma proteins into the host cell.
- Published in:
- eLife, 2015, p. 1, doi. 10.7554/eLife.10809
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- Publication type:
- Article
RNA-seq mixology: designing realistic control experiments to compare protocols and analysis methods.
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- Nucleic Acids Research, 2017, v. 45, n. 5, p. 1, doi. 10.1093/nar/gkw1063
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- Publication type:
- Article
csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1191
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- Publication type:
- Article
Why weight? Modelling sample and observational level variability improves power in RNA-seq analyses.
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- Nucleic Acids Research, 2015, v. 43, n. 15, p. 1, doi. 10.1093/nar/gkv412
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- Publication type:
- Article
limma powers differential expression analyses for RNA-sequencing and microarray studies.
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- Nucleic Acids Research, 2015, v. 43, n. 7, p. e47, doi. 10.1093/nar/gkv007
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- Publication type:
- Article
De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly.
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- Nucleic Acids Research, 2014, v. 42, n. 11, p. e95, doi. 10.1093/nar/gku351
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- Publication type:
- Article
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote.
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- Nucleic Acids Research, 2013, v. 41, n. 10, p. e108, doi. 10.1093/nar/gkt214
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- Publication type:
- Article
Camera: a competitive gene set test accounting for inter-gene correlation.
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- Nucleic Acids Research, 2012, v. 40, n. 17, p. e133, doi. 10.1093/nar/gks461
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- Publication type:
- Article
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.
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- Nucleic Acids Research, 2012, v. 40, n. 10, p. 4288, doi. 10.1093/nar/gks042
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- Publication type:
- Article
Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips.
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- Nucleic Acids Research, 2010, v. 38, n. 22, p. e204, doi. 10.1093/nar/gkq871
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- Publication type:
- Article
Estimating the proportion of microarray probes expressed in an RNA sample.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2168, doi. 10.1093/nar/gkp1204
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- Publication type:
- Article
The concerted change in the distribution of cell cycle phases and zone composition in germinal centers is regulated by IL-21.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27477-0
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- Publication type:
- Article
Mammary tumour cells remodel the bone marrow vascular microenvironment to support metastasis.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26556-6
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- Publication type:
- Article
Genome-wide functional analysis reveals central signaling regulators of lymphatic endothelial cell migration and remodeling.
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- Science Signaling, 2017, v. 10, n. 499, p. 1, doi. 10.1126/scisignal.aal2987
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- Article
Aberrant luminal progenitors as the candidate target population for basal tumor development in BRCA1 mutation carriers.
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- Nature Medicine, 2009, v. 15, n. 8, p. 907, doi. 10.1038/nm.2000
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- Publication type:
- Article
Mouse models to investigate in situ cell fate decisions induced by p53.
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- EMBO Journal, 2024, v. 43, n. 19, p. 4406, doi. 10.1038/s44318-024-00189-z
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- Article
A single‐cell RNA expression atlas of normal, preneoplastic and tumorigenic states in the human breast.
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- EMBO Journal, 2021, v. 40, n. 11, p. 1, doi. 10.15252/embj.2020107333
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- Publication type:
- Article
Deaf-1 regulates epithelial cell proliferation and side-branching in the mammary gland.
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- BMC Developmental Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-213X-8-94
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- Publication type:
- Article
Genome-wide analysis reveals no evidence of trans chromosomal regulation of mammalian immune development.
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- PLoS Genetics, 2018, v. 14, n. 6, p. 1, doi. 10.1371/journal.pgen.1007431
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- Publication type:
- Article
No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data.
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- Statistical Applications in Genetics & Molecular Biology, 2017, v. 16, n. 2, p. 83, doi. 10.1515/sagmb-2017-0010
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- Publication type:
- Article
Detecting Differential Expression in RNA-sequence Data Using Quasi-likelihood with Shrunken Dispersion Estimates.
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- Statistical Applications in Genetics & Molecular Biology, 2012, v. 11, n. 5, p. -1, doi. 10.1515/1544-6115.1826
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- Publication type:
- Article
Permutation P-values Should Never Be Zero: Calculating Exact P-values When Permutations Are Randomly Drawn.
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- Statistical Applications in Genetics & Molecular Biology, 2010, v. 9, n. 1, p. 1, doi. 10.2202/1544-6115.1585
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- Publication type:
- Article
Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments.
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- Statistical Applications in Genetics & Molecular Biology, 2004, v. 3, n. 1, p. 1, doi. 10.2202/1544-6115.1027
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- Article
Canonical PRC2 function is essential for mammary gland development and affects chromatin compaction in mammary organoids.
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- PLoS Biology, 2018, v. 16, n. 8, p. 1, doi. 10.1371/journal.pbio.2004986
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- Publication type:
- Article
Neither random nor censored: estimating intensity-dependent probabilities for missing values in label-free proteomics.
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- Bioinformatics, 2023, v. 39, n. 5, p. 1, doi. 10.1093/bioinformatics/btad200
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- Article
Aliskiren increases bradykinin and tissue kallikrein mRNA levels in the heart.
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- Clinical & Experimental Pharmacology & Physiology, 2011, v. 38, n. 9, p. 623, doi. 10.1111/j.1440-1681.2011.05572.x
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- Article
Single cell transcriptome atlas of mouse mammary epithelial cells across development.
- Published in:
- 2021
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- Publication type:
- journal article
Technical Variability Is Greater than Biological Variability in a Microarray Experiment but Both Are Outweighed by Changes Induced by Stimulation.
- Published in:
- PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0019556
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- Publication type:
- Article
DNMT3L Is a Regulator of X Chromosome Compaction and Post-Meiotic Gene Transcription.
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- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0018276
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- Publication type:
- Article
Amplicon-Dependent CCNE1 Expression Is Critical for Clonogenic Survival after Cisplatin Treatment and Is Correlated with 20q11 Gain in Ovarian Cancer.
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- PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0015498
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- Publication type:
- Article
Copy Number Analysis Identifies Novel Interactions Between Genomic Loci in Ovarian Cancer.
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- PLoS ONE, 2010, v. 5, n. 9, p. 1, doi. 10.1371/journal.pone.0011408
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- Publication type:
- Article
Gene Network Disruptions and Neurogenesis Defects in the Adult Ts1Cje Mouse Model of Down Syndrome.
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- PLoS ONE, 2010, v. 5, n. 7, p. 1, doi. 10.1371/journal.pone.0011561
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- Publication type:
- Article
Detection of Gene Expression in an Individual Cell Type within a Cell Mixture Using Microarray Analysis.
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- PLoS ONE, 2009, v. 4, n. 2, p. 1, doi. 10.1371/journal.pone.0004427
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- Article
When Random Assignment Fails: Some Lessons from the Minneapolis Spouse Abuse Experiment.
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- Journal of Quantitative Criminology, 1988, v. 4, n. 3, p. 209, doi. 10.1007/BF01072450
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- Publication type:
- Article
Myocardial Gene Expression Associated with Genetic Cardiac Hypertrophy in the Absence of Hypertension.
- Published in:
- Hypertension Research, 2008, v. 31, n. 5, p. 941, doi. 10.1291/hypres.31.941
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- Publication type:
- Article
Quantitative proteomic profiling reveals novel region-specific markers in the adult mouse brain.
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- Proteomics, 2014, v. 14, n. 2/3, p. 241, doi. 10.1002/pmic.201300196
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- Publication type:
- Article
A non-canonical function of Ezh2 preserves immune homeostasis.
- Published in:
- EMBO Reports, 2017, v. 18, n. 4, p. 619, doi. 10.15252/embr.201643237
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- Publication type:
- Article