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Escherichia coli O157:H7 tir 255 T > A allele strains differ in chromosomal and plasmid composition.
Published in:
Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1303387
By:
- Weinroth, Margaret D.;
- Clawson, Michael L.;
- Harhay, Gregory P.;
- Eppinger, Mark;
- Harhay, Dayna M.;
- Smith, Timothy P. L.;
- Bono, James L.
Publication type:
Article
Vaginal and Uterine Bacterial Communities in Postpartum Lactating Cows.
Published in:
Frontiers in Microbiology, 2017, p. 1, doi. 10.2147/LCTT.S104205
By:
- Clemmons, Brooke A.;
- Reese, Sydney T.;
- Dantas, Felipe G.;
- Franco, Gessica A.;
- Smith, Timothy P. L.;
- Adeyosoye, Olusoji I.;
- Pohler, Ky G.;
- Myer, Phillip R.
Publication type:
Article
Reference Transcriptomes of Porcine Peripheral Immune Cells Created Through Bulk and Single-Cell RNA Sequencing.
Published in:
Frontiers in Genetics, 2021, v. 11, p. 1, doi. 10.3389/fgene.2021.689406
By:
- Herrera-Uribe, Juber;
- Wiarda, Jayne E.;
- Sivasankaran, Sathesh K.;
- Daharsh, Lance;
- Liu, Haibo;
- Byrne, Kristen A.;
- Smith, Timothy P. L.;
- Lunney, Joan K.;
- Loving, Crystal L.;
- Tuggle, Christopher K.
Publication type:
Article
Characterizing Genetic Regulatory Elements in Ovine Tissues.
Published in:
Frontiers in Genetics, 2021, v. 11, p. 1, doi. 10.3389/fgene.2021.628849
By:
- Davenport, Kimberly M.;
- Massa, Alisha T.;
- Bhattarai, Suraj;
- McKay, Stephanie D.;
- Mousel, Michelle R.;
- Herndon, Maria K.;
- White, Stephen N.;
- Cockett, Noelle E.;
- Smith, Timothy P. L.;
- Murdoch, Brenda M.
Publication type:
Article
Global Analysis of Transcription Start Sites in the New Ovine Reference Genome (Oar rambouillet v1.0).
Published in:
Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.580580
By:
- Salavati, Mazdak;
- Caulton, Alex;
- Clark, Richard;
- Gazova, Iveta;
- Smith, Timothy P. L.;
- Worley, Kim C.;
- Cockett, Noelle E.;
- Archibald, Alan L.;
- Clarke, Shannon M.;
- Murdoch, Brenda M.;
- Clark, Emily L.
Publication type:
Article
Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30680-2
By:
- Leonard, Alexander S.;
- Crysnanto, Danang;
- Fang, Zih-Hua;
- Heaton, Michael P.;
- Vander Ley, Brian L.;
- Herrera, Carolina;
- Bollwein, Heinrich;
- Bickhart, Derek M.;
- Kuhn, Kristen L.;
- Smith, Timothy P. L.;
- Rosen, Benjamin D.;
- Pausch, Hubert
Publication type:
Article
New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6364-z
By:
- Liu, Ruijie;
- Low, Wai Yee;
- Tearle, Rick;
- Koren, Sergey;
- Ghurye, Jay;
- Rhie, Arang;
- Phillippy, Adam M.;
- Rosen, Benjamin D.;
- Bickhart, Derek M.;
- Smith, Timothy P. L.;
- Hiendleder, Stefan;
- Williams, John L.
Publication type:
Article
Synaptogyrin-2 influences replication of Porcine circovirus 2.
Published in:
PLoS Genetics, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pgen.1007750
By:
- Walker, Lianna R.;
- Engle, Taylor B.;
- Vu, Hiep;
- Tosky, Emily R.;
- Nonneman, Dan J.;
- Smith, Timothy P. L.;
- Borza, Tudor;
- Burkey, Thomas E.;
- Plastow, Graham S.;
- Kachman, Stephen D.;
- Ciobanu, Daniel C.
Publication type:
Article
Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20536-y
By:
- Kronenberg, Zev N.;
- Rhie, Arang;
- Koren, Sergey;
- Concepcion, Gregory T.;
- Peluso, Paul;
- Munson, Katherine M.;
- Porubsky, David;
- Kuhn, Kristen;
- Mueller, Kathryn A.;
- Wai Yee Low;
- Hiendleder, Stefan;
- Fedrigo, Olivier;
- Liachko, Ivan;
- Hall, Richard J.;
- Phillippy, Adam M.;
- Eichler, Evan E.;
- Williams, John L.;
- Smith, Timothy P. L.;
- Jarvis, Erich D.;
- Sullivan, Shawn T.
Publication type:
Article
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities.
Published in:
Nature Biotechnology, 2022, v. 40, n. 5, p. 711, doi. 10.1038/s41587-021-01130-z
By:
- Bickhart, Derek M.;
- Kolmogorov, Mikhail;
- Tseng, Elizabeth;
- Portik, Daniel M.;
- Korobeynikov, Anton;
- Tolstoganov, Ivan;
- Uritskiy, Gherman;
- Liachko, Ivan;
- Sullivan, Shawn T.;
- Shin, Sung Bong;
- Zorea, Alvah;
- Andreu, Victòria Pascal;
- Panke-Buisse, Kevin;
- Medema, Marnix H.;
- Mizrahi, Itzhak;
- Pevzner, Pavel A.;
- Smith, Timothy P. L.
Publication type:
Article
De novo assembly of haplotype-resolved genomes with trio binning.
Published in:
Nature Biotechnology, 2018, v. 36, n. 12, p. 1174, doi. 10.1038/nbt.4277
By:
- Koren, Sergey;
- Rhie, Arang;
- Walenz, Brian P;
- Dilthey, Alexander T;
- Bickhart, Derek M;
- Kingan, Sarah B;
- Hiendleder, Stefan;
- Williams, John L;
- Smith, Timothy P L;
- Phillippy, Adam M
Publication type:
Article
Ovine reference materials and assays for prion genetic testing.
Published in:
BMC Veterinary Research, 2010, v. 6, p. 23, doi. 10.1186/1746-6148-6-23
By:
- Heaton, Michael P.;
- Leymaster, Kreg A.;
- Kalbfleisch, Theodore S.;
- Freking, Brad A.;
- Smith, Timothy P. L.;
- Clawson, Michael L.;
- Laegreid, William W.
Publication type:
Article
SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries.
Published in:
Nature Methods, 2008, v. 5, n. 3, p. 247, doi. 10.1038/nmeth.1185
By:
- Van Tassell, Curtis P.;
- Smith, Timothy P. L.;
- Matukumalli, Lakshmi K.;
- Taylor, Jeremy F.;
- Schnabel, Robert D.;
- Lawley, Cynthia Taylor;
- Haudenschild, Christian D.;
- Moore, Stephen S.;
- Warren, Wesley C.;
- Sonstegard, Tad S.
Publication type:
Article
.Application of circular consensus sequencing and network analysis to characterize the bovine IgG repertoire.
Published in:
BMC Immunology, 2012, v. 13, n. 1, p. 52, doi. 10.1186/1471-2172-13-52
By:
- Larsen, Peter A.;
- Smith, Timothy P. L.
Publication type:
Article
Distinctive gene expression patterns and imprinting signatures revealed in reciprocal crosses between cattle sub-species.
Published in:
BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07667-2
By:
- Liu, Ruijie;
- Tearle, Rick;
- Low, Wai Yee;
- Chen, Tong;
- Thomsen, Dana;
- Smith, Timothy P. L.;
- Hiendleder, Stefan;
- Williams, John L.
Publication type:
Article
Differential gene expression during elongation in the preimplantation pig embryo.
Published in:
Genesis: The Journal of Genetics & Development, 2000, v. 26, n. 1, p. 9, doi. 10.1002/(SICI)1526-968X(200001)26:1<9::AID-GENE4>3.0.CO;2-1
By:
- Wilson, Matthew E.;
- Sonstegard, Tad S.;
- Smith, Timothy P. L.;
- Fahrenkrug, Scott C.;
- Ford, Stephen P.
Publication type:
Article
Erratum to: A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus.
Published in:
Journal of Heredity, 2021, v. 112, n. 6, p. 565, doi. 10.1093/jhered/esab039
By:
- Heaton, Michael P;
- Smith, Timothy P L;
- Bickhart, Derek M;
- Ley, Brian L Vander;
- Kuehn, Larry A;
- Oppenheimer, Jonas;
- Shafer, Wade R;
- Schuetze, Fred T;
- Stroud, Brad;
- McClure, Jennifer C;
- Barfield, Jennifer P;
- Blackburn, Harvey D;
- Kalbfleisch, Theodore S;
- Davenport, Kimberly M;
- Kuhn, Kristen L;
- Green, Richard E;
- Shapiro, Beth;
- Rosen, Benjamin D
Publication type:
Article
A Reference Genome Assembly of American Bison, Bison bison bison.
Published in:
Journal of Heredity, 2021, v. 112, n. 2, p. 174, doi. 10.1093/jhered/esab003
By:
- Oppenheimer, Jonas;
- Rosen, Benjamin D;
- Heaton, Michael P;
- Ley, Brian L Vander;
- Shafer, Wade R;
- Schuetze, Fred T;
- Stroud, Brad;
- Kuehn, Larry A;
- McClure, Jennifer C;
- Barfield, Jennifer P;
- Blackburn, Harvey D;
- Kalbfleisch, Theodore S;
- Bickhart, Derek M;
- Davenport, Kimberly M;
- Kuhn, Kristen L;
- Green, Richard E;
- Shapiro, Beth;
- Smith, Timothy P L
Publication type:
Article
A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus.
Published in:
Journal of Heredity, 2021, v. 112, n. 2, p. 184, doi. 10.1093/jhered/esab002
By:
- Heaton, Michael P;
- Smith, Timothy P L;
- Bickhart, Derek M;
- Ley, Brian L Vander;
- Kuehn, Larry A;
- Oppenheimer, Jonas;
- Shafer, Wade R;
- Schuetze, Fred T;
- Stroud, Brad;
- McClure, Jennifer C;
- Barfield, Jennifer P;
- Blackburn, Harvey D;
- Kalbfleisch, Theodore S;
- Davenport, Kimberly M;
- Kuhn, Kristen L;
- Green, Richard E;
- Shapiro, Beth;
- Rosen, Benjamin D
Publication type:
Article
An improved ovine reference genome assembly to facilitate in-depth functional annotation of the sheep genome.
Published in:
GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giab096
By:
- Davenport, Kimberly M;
- Bickhart, Derek M;
- Worley, Kim;
- Murali, Shwetha C;
- Salavati, Mazdak;
- Clark, Emily L;
- Cockett, Noelle E;
- Heaton, Michael P;
- Smith, Timothy P L;
- Murdoch, Brenda M;
- Rosen, Benjamin D
Publication type:
Article
Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle.
Published in:
GigaScience, 2020, v. 9, n. 4, p. N.PAG, doi. 10.1093/gigascience/giaa029
By:
- Rice, Edward S;
- Koren, Sergey;
- Rhie, Arang;
- Heaton, Michael P;
- Kalbfleisch, Theodore S;
- Hardy, Timothy;
- Hackett, Peter H;
- Bickhart, Derek M;
- Rosen, Benjamin D;
- Ley, Brian Vander;
- Maurer, Nicholas W;
- Green, Richard E;
- Phillippy, Adam M;
- Petersen, Jessica L;
- Smith, Timothy P L
Publication type:
Article
Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C.
Published in:
GigaScience, 2020, v. 9, n. 4, p. N.PAG, doi. 10.1093/gigascience/giaa027
By:
- Field, Matt A;
- Rosen, Benjamin D;
- Dudchenko, Olga;
- Chan, Eva K F;
- Minoche, Andre E;
- Edwards, Richard J;
- Barton, Kirston;
- Lyons, Ruth J;
- Tuipulotu, Daniel Enosi;
- Hayes, Vanessa M;
- D. Omer, Arina;
- Colaric, Zane;
- Keilwagen, Jens;
- Skvortsova, Ksenia;
- Bogdanovic, Ozren;
- Smith, Martin A;
- Aiden, Erez Lieberman;
- Smith, Timothy P L;
- Zammit, Robert A;
- Ballard, J William O
Publication type:
Article
Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50).
Published in:
GigaScience, 2017, v. 6, n. 10, p. 1, doi. 10.1093/gigascience/gix088
By:
- Williams, John L.;
- Iamartino, Daniela;
- Pruitt, Kim D.;
- Sonstegard, Tad;
- Smith, Timothy P. L.;
- Wai Yee Low;
- Biagini, Tommaso;
- Bomba, Lorenzo;
- Capomaccio, Stefano;
- Castiglioni, Bianca;
- Coletta, Angelo;
- Corrado, Federica;
- Ferré, Fabrizio;
- Iannuzzi, Leopoldo;
- Lawley, Cynthia;
- Macciotta, Nicolò;
- McClure, Matthew;
- Mancini, Giordano;
- Matassino, Donato;
- Mazza, Raffaele
Publication type:
Article
Myostatin maps to porcine chromosome 15 by linkage and physical analyses.
Published in:
Animal Genetics, 1998, v. 29, n. 1, p. 19, doi. 10.1046/j.1365-2052.1998.00229.x
By:
- Sonstegard;
- Rohrer;
- Smith;
- Smith, Timothy P. L.
Publication type:
Article
Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47015-y
By:
- Liu, Xiaodong;
- Lin, Long;
- Sinding, Mikkel-Holger S.;
- Bertola, Laura D.;
- Hanghøj, Kristian;
- Quinn, Liam;
- Garcia-Erill, Genís;
- Rasmussen, Malthe Sebro;
- Schubert, Mikkel;
- Pečnerová, Patrícia;
- Balboa, Renzo F.;
- Li, Zilong;
- Heaton, Michael P.;
- Smith, Timothy P. L.;
- Pinto, Rui Resende;
- Wang, Xi;
- Kuja, Josiah;
- Brüniche-Olsen, Anna;
- Meisner, Jonas;
- Santander, Cindy G.
Publication type:
Article
Rumen Microbiome from Steers Differing in Feed Efficiency.
Published in:
PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0129174
By:
- Myer, Phillip R.;
- Smith, Timothy P. L.;
- Wells, James E.;
- Kuehn, Larry A.;
- Freetly, Harvey C.
Publication type:
Article
SNPs for Parentage Testing and Traceability in Globally Diverse Breeds of Sheep.
Published in:
PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0094851
By:
- Heaton, Michael P.;
- Leymaster, Kreg A.;
- Kalbfleisch, Theodore S.;
- Kijas, James W.;
- Clarke, Shannon M.;
- McEwan, John;
- Maddox, Jillian F.;
- Basnayake, Veronica;
- Petrik, Dustin T.;
- Simpson, Barry;
- Smith, Timothy P. L.;
- Chitko-McKown, Carol G.
Publication type:
Article
Development and Characterization of a High Density SNP Genotyping Assay for Cattle.
Published in:
PLoS ONE, 2009, v. 4, n. 4, p. 1, doi. 10.1371/journal.pone.0005350
By:
- Matukumalli, Lakshmi K.;
- Lawley, Cynthia T.;
- Schnabel, Robert D.;
- Taylor, Jeremy F.;
- Allan, Mark F.;
- Heaton, Michael P.;
- O'Connell, Jeff;
- Moore, Stephen S.;
- Smith, Timothy P. L.;
- Sonstegard, Tad S.;
- Van Tassell, Curtis P.
Publication type:
Article
Association of a Bovine Prion Gene Haplotype with Atypical BSE.
Published in:
2008
By:
- Clawson, Michael L.;
- Richt, Juergen A.;
- Baron, Thierry;
- Biacabe, Anne-Gaëlle;
- Czub, Stefanie;
- Heaton, Michael P.;
- Smith, Timothy P. L.;
- Laegreid, William W.
Publication type:
Case Study
Differences between predicted outer membrane proteins of genotype 1 and 2 Mannheimia haemolytica.
Published in:
BMC Microbiology, 2020, v. 20, n. 1, p. 1, doi. 10.1186/s12866-020-01932-2
By:
- Clawson, Michael L.;
- Schuller, Gennie;
- Dickey, Aaron M.;
- Bono, James L.;
- Murray, Robert W.;
- Sweeney, Michael T.;
- Apley, Michael D.;
- DeDonder, Keith D.;
- Capik, Sarah F.;
- Larson, Robert L.;
- Lubbers, Brian V.;
- White, Brad J.;
- Blom, Jochen;
- Chitko-McKown, Carol G.;
- Brichta-Harhay, Dayna M.;
- Smith, Timothy P. L.
Publication type:
Article
Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3316-8
By:
- Clawson, Michael L.;
- Murray, Robert W.;
- Sweeney, Michael T.;
- Apley, Michael D.;
- DeDonder, Keith D.;
- Capik, Sarah F.;
- Larson, Robert L.;
- Lubbers, Brian V.;
- White, Brad J.;
- Kalbfleisch, Theodore S.;
- Schuller, Gennie;
- Dickey, Aaron M.;
- Harhay, Gregory P.;
- Heaton, Michael P.;
- Chitko-McKown, Carol G.;
- Brichta-Harhay, Dayna M.;
- Bono, James L.;
- Smith, Timothy P. L.
Publication type:
Article
Whole genomic sequence analysis of Bacillus infantis: defining the genetic blueprint of strain NRRL B-14911, an emerging cardiopathogenic microbe.
Published in:
BMC Genomics, 2016, v. 17, p. 157, doi. 10.1186/s12864-016-2900-2
By:
- Massilamany, Chandirasegaran;
- Mohammed, Akram;
- Dustin Loy, John;
- Purvis, Tanya;
- Krishnan, Bharathi;
- Basavalingappa, Rakesh H.;
- Kelley, Christy M.;
- Guda, Chittibabu;
- Barletta, Raúl G.;
- Moriyama, Etsuko N.;
- Smith, Timothy P. L.;
- Reddy, Jay
Publication type:
Article
Structural Diversity of Ultralong CDRH3s in Seven Bovine Antibody Heavy Chains.
Published in:
Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.00558
By:
- Dong, Jinhui;
- Finn, Jessica A.;
- Larsen, Peter A.;
- Smith, Timothy P. L.;
- Crowe, James E.
Publication type:
Article
The USDA-ARS Ag100Pest Initiative: High-Quality Genome Assemblies for Agricultural Pest Arthropod Research.
Published in:
Insects (2075-4450), 2021, v. 12, n. 7, p. 626, doi. 10.3390/insects12070626
By:
- Childers, Anna K.;
- Geib, Scott M.;
- Sim, Sheina B.;
- Poelchau, Monica F.;
- Coates, Brad S.;
- Simmonds, Tyler J.;
- Scully, Erin D.;
- Smith, Timothy P. L.;
- Childers, Christopher P.;
- Corpuz, Renee L.;
- Hackett, Kevin;
- Scheffler, Brian
Publication type:
Article
Variants in the Mitochondrial Genome Sequence of Rhyzopertha dominica (Fabricius) (Coleoptera: Bostrycidae).
Published in:
Insects (2075-4450), 2021, v. 12, n. 5, p. 387, doi. 10.3390/insects12050387
By:
- Perkin, Lindsey C.;
- Smith, Timothy P. L.;
- Oppert, Brenda;
- Legeai, Fabrice
Publication type:
Article
Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-018-08260-0
By:
- Low, Wai Yee;
- Tearle, Rick;
- Bickhart, Derek M.;
- Rosen, Benjamin D.;
- Kingan, Sarah B.;
- Swale, Thomas;
- Thibaud-Nissen, Françoise;
- Murphy, Terence D.;
- Young, Rachel;
- Lefevre, Lucas;
- Hume, David A.;
- Collins, Andrew;
- Ajmone-Marsan, Paolo;
- Smith, Timothy P. L.;
- Williams, John L.
Publication type:
Article
Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library.
Published in:
BMC Genomics, 2009, v. 10, p. 559, doi. 10.1186/1471-2164-10-559
By:
- Sánchez, Cecilia Castaño;
- Smith, Timothy P. L.;
- Wiedmann, Ralph T.;
- Vallejo, Roger L.;
- Salem, Mohamed;
- Jianbo Yao;
- Rexroad, III, Caird E.
Publication type:
Article
MicroRNA transcriptome profiles during swine skeletal muscle development.
Published in:
BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-77
By:
- McDaneld, Tara G.;
- L Smith, Timothy P.;
- Doumit, Matthew E.;
- Miles, Jeremy R.;
- Coutinho, Luiz L.;
- Sonstegard, Tad S.;
- Matukumalli, Lakshmi K.;
- Nonneman, Dan J.;
- Wiedmann, Ralph T.
Publication type:
Article
Integrating linkage and radiation hybrid mapping data for bovine chromosome 15.
Published in:
BMC Genomics, 2004, v. 5, p. 77, doi. 10.1186/1471-2164-5-77
By:
- Snelling, Warren M.;
- Gautier, Mathieu;
- Keele, John W.;
- Smith, Timothy P. L.;
- Stone, Roger T.;
- Harhay, Gregory P.;
- Bennett, Gary L.;
- Ihara, Naoya;
- Takasuga, Akiko;
- Takeda, Haruko;
- Sugimoto, Yoshikazu;
- Eggen, André
Publication type:
Article
Publisher Correction: A Computational Method to Quantify the Effects of Slipped Strand Mispairing on Bacterial Tetranucleotide Repeats.
Published in:
2020
By:
- Harhay, Gregory P.;
- Harhay, Dayna M.;
- Bono, James L.;
- Capik, Sarah F.;
- DeDonder, Keith D.;
- Apley, Michael D.;
- Lubbers, Brian V.;
- White, Bradley J.;
- Larson, Robert L.;
- Smith, Timothy P. L.
Publication type:
Correction Notice
A Computational Method to Quantify the Effects of Slipped Strand Mispairing on Bacterial Tetranucleotide Repeats.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-53866-z
By:
- Harhay, Gregory P.;
- Harhay, Dayna M.;
- Bono, James L.;
- Capik, Sarah F.;
- DeDonder, Keith D.;
- Apley, Michael D.;
- Lubbers, Brian V.;
- White, Bradley J.;
- Larson, Robert L.;
- Smith, Timothy P. L.
Publication type:
Article
Genome to Phenome: Improving Animal Health, Production, and Well-Being – A New USDA Blueprint for Animal Genome Research 2018–2027.
Published in:
Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2019.00327
By:
- Rexroad, Caird;
- Vallet, Jeffrey;
- Matukumalli, Lakshmi Kumar;
- Reecy, James;
- Bickhart, Derek;
- Blackburn, Harvey;
- Boggess, Mark;
- Cheng, Hans;
- Clutter, Archie;
- Cockett, Noelle;
- Ernst, Catherine;
- Fulton, Janet E.;
- Liu, John;
- Lunney, Joan;
- Neibergs, Holly;
- Purcell, Catherine;
- Smith, Timothy P. L.;
- Sonstegard, Tad;
- Taylor, Jerry;
- Telugu, Bhanu
Publication type:
Article
Insight into weevil biology from a reference quality genome of the boll weevil, Anthonomus grandis grandis Boheman (Coleoptera: Curculionidae).
Published in:
G3: Genes | Genomes | Genetics, 2023, v. 13, n. 2, p. 1, doi. 10.1093/g3journal/jkac309
By:
- Cohen, Zachary P.;
- Perkin, Lindsey C.;
- Sim, Sheina B.;
- Stahlke, Amanda R.;
- Geib, Scott M.;
- Childers, Anna K.;
- Smith, Timothy P. L.;
- Suh, Charles
Publication type:
Article
Classification of 16S rRNA reads is improved using a niche-specific database constructed by near-full length sequencing.
Published in:
PLoS ONE, 2020, v. 15, n. 7, p. 1, doi. 10.1371/journal.pone.0235498
By:
- Myer, Phillip R.;
- McDaneld, Tara G.;
- Kuehn, Larry A.;
- Dedonder, Keith D.;
- Apley, Michael D.;
- Capik, Sarah F.;
- Lubbers, Brian V.;
- Harhay, Gregory P.;
- Harhay, Dayna M.;
- Keele, John W.;
- Henniger, Madison T.;
- Clemmons, Brooke A.;
- Smith, Timothy P. L.
Publication type:
Article
Resolving Bovine viral diarrhea virus subtypes from persistently infected U.S. beef calves with complete genome sequence.
Published in:
Journal of Veterinary Diagnostic Investigation, 2016, v. 28, n. 5, p. 519, doi. 10.1177/1040638716654943
By:
- Workman, Aspen M.;
- Heaton, Michael P.;
- Harhay, Gregory P.;
- Smith, Timothy P. L.;
- Grotelueschen, Dale M.;
- Sjeklocha, David;
- Brodersen, Bruce;
- Petersen, Jessica L.;
- Chitko-McKown, Carol G.
Publication type:
Article
Defining the caprine γδ T cell WC1 multigenic array and evaluation of its expressed sequences and gene structure conservation among goat breeds and relative to cattle.
Published in:
Immunogenetics, 2022, v. 74, n. 3, p. 347, doi. 10.1007/s00251-022-01254-9
By:
- Yirsaw, Alehegne W.;
- Gillespie, Alexandra;
- Zhang, Fengqiu;
- Smith, Timothy P. L.;
- Bickhart, Derek M.;
- Gunasekaran, Karthick P.;
- Amir, Maria;
- Park, Haeree;
- Telfer, Janice C.;
- Baldwin, Cynthia L.
Publication type:
Article
The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species.
Published in:
2023
By:
- Smith, Timothy P. L.;
- Bickhart, Derek M.;
- Boichard, Didier;
- Chamberlain, Amanda J.;
- Djikeng, Appolinaire;
- Jiang, Yu;
- Low, Wai Y.;
- Pausch, Hubert;
- Demyda-Peyrás, Sebastian;
- Prendergast, James;
- Schnabel, Robert D.;
- Rosen, Benjamin D.
Publication type:
Letter
Reducing assembly complexity of microbial genomes with single-molecule sequencing.
Published in:
Genome Biology, 2013, v. 14, n. 9, p. 1, doi. 10.1186/gb-2013-14-9-r101
By:
- Koren, Sergey;
- Harhay, Gregory P.;
- Smith, Timothy P. L.;
- Bono, James L.;
- Harhay, Dayna M.;
- Mcvey, Scott D.;
- Radune, Diana;
- Bergman, Nicholas H.;
- Phillippy, Adam M.
Publication type:
Article
Comparative Genomics of the Campylobacter lari Group.
Published in:
Genome Biology & Evolution, 2014, v. 6, n. 12, p. 3252, doi. 10.1093/gbe/evu249
By:
- Miller, William G.;
- Yee, Emma;
- Chapman, Mary H.;
- Smith, Timothy P. L.;
- Bono, James L.;
- Huynh, Steven;
- Parker, Craig T.;
- Vandamme, Peter;
- Luong, Khai;
- Korlach, Jonas
Publication type:
Article
A high-quality annotated transcriptome of swine peripheral blood.
Published in:
BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3863-7
By:
- Haibo Liu;
- Smith, Timothy P. L.;
- Nonneman, Dan J.;
- Dekkers, Jack C. M.;
- Tuggle, Christopher K.
Publication type:
Article

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