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Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq.
Published in:
Nucleic Acids Research, 2011, v. 39, n. 20, p. e140, doi. 10.1093/nar/gkr617
By:
- Yi, Hana;
- Cho, Yong-Joon;
- Won, Sungho;
- Lee, Jong-Eun;
- Jin Yu, Hyung;
- Kim, Sujin;
- Schroth, Gary P.;
- Luo, Shujun;
- Chun, Jongsik
Publication type:
Article
Highly sensitive and specific microRNA expression profiling using BeadArray technology.
Published in:
Nucleic Acids Research, 2008, v. 36, n. 14, p. e87, doi. 10.1093/nar/gkn387
By:
- Chen, Jing;
- Lozach, Jean;
- Garcia, Eliza Wickham;
- Barnes, Bret;
- Luo, Shujun;
- Mikoulitch, Ivan;
- Zhou, Lixin;
- Schroth, Gary;
- Fan, Jian-Bing
Publication type:
Article
A mutation in TGFB 3 associated with a syndrome of low muscle mass, growth retardation, distal arthrogryposis and clinical features overlapping with marfan and loeys-dietz syndrome.
Published in:
American Journal of Medical Genetics. Part A, 2013, v. 161A, n. 8, p. 2040, doi. 10.1002/ajmg.a.36056
By:
- RiENhoff, Hugh Young;
- Yeo, Chang ‐ Yeol;
- Morissette, Rachel;
- Khrebtukova, Irina;
- Melnick, Jonathan;
- Luo, Shujun;
- LENg, Nan;
- Kim, Yeon ‐ Jin;
- Schroth, Gary;
- Westwick, John;
- Vogel, Hannes;
- McDonnell, Nazli;
- Hall, Judith G.;
- Whitman, Malcolm
Publication type:
Article
Author Correction: Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.
Published in:
2020
By:
- Ramsköld, Daniel;
- Luo, Shujun;
- Wang, Yu-Chieh;
- Li, Robin;
- Deng, Qiaolin;
- Faridani, Omid R.;
- Daniels, Gregory A.;
- Khrebtukova, Irina;
- Loring, Jeanne F.;
- Laurent, Louise C.;
- Schroth, Gary P.;
- Sandberg, Rickard
Publication type:
Correction Notice
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.
Published in:
Nature Biotechnology, 2012, v. 30, n. 8, p. 777, doi. 10.1038/nbt.2282
By:
- Ramsköld, Daniel;
- Luo, Shujun;
- Wang, Yu-Chieh;
- Li, Robin;
- Deng, Qiaolin;
- Faridani, Omid R;
- Daniels, Gregory A;
- Khrebtukova, Irina;
- Loring, Jeanne F;
- Laurent, Louise C;
- Schroth, Gary P;
- Sandberg, Rickard
Publication type:
Article
Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument.
Published in:
Nature Biotechnology, 2011, v. 29, n. 7, p. 659, doi. 10.1038/nbt.1882
By:
- Nutiu, Razvan;
- Friedman, Robin C;
- Luo, Shujun;
- Khrebtukova, Irina;
- Silva, David;
- Li, Robin;
- Zhang, Lu;
- Schroth, Gary P;
- Burge, Christopher B
Publication type:
Article
Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends.
Published in:
Nature Biotechnology, 2008, v. 26, n. 8, p. 941, doi. 10.1038/nbt1417
By:
- German, Marcelo A;
- Pillay, Manoj;
- Jeong, Dong-Hoon;
- Hetawal, Amit;
- Luo, Shujun;
- Janardhanan, Prakash;
- Kannan, Vimal;
- Rymarquis, Linda A;
- Nobuta, Kan;
- German, Rana;
- De Paoli, Emanuele;
- Lu, Cheng;
- Schroth, Gary;
- Meyers, Blake C;
- Green, Pamela J
Publication type:
Article
Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays.
Published in:
Nature Biotechnology, 2000, v. 18, n. 6, p. 630, doi. 10.1038/76469
By:
- Brenner, Sydney;
- Johnson, Maria;
- Bridgham, John;
- Golda, George;
- Lloyd, David H.;
- Johnson, Davida;
- Luo, Shujun;
- McCurdy, Sarah;
- Foy, Michael;
- Ewan, Mark;
- Roth, Rithy;
- George, Dave;
- Eletr, Sam;
- Albrecht, Glenn;
- Vermaas, Eric;
- Williams, Steven R.;
- Moon, Keith;
- Burcham, Timothy;
- Pallas, Michael
Publication type:
Article
Corrigendum: Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study.
Published in:
Nature Methods, 2014, v. 11, n. 9, p. 971, doi. 10.1038/nmeth0914-971b
By:
- Mestdagh, Pieter;
- Hartmann, Nicole;
- Baeriswyl, Lukas;
- Andreasen, Ditte;
- Bernard, Nathalie;
- Chen, Caifu;
- Cheo, David;
- D'Andrade, Petula;
- DeMayo, Mike;
- Dennis, Lucas;
- Derveaux, Stefaan;
- Feng, Yun;
- Fulmer-Smentek, Stephanie;
- Gerstmayer, Bernhard;
- Gouffon, Julia;
- Grimley, Chris;
- Lader, Eric;
- Lee, Kathy Y;
- Luo, Shujun;
- Mouritzen, Peter
Publication type:
Article
Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study.
Published in:
Nature Methods, 2014, v. 11, n. 8, p. 809, doi. 10.1038/nmeth.3014
By:
- Mestdagh, Pieter;
- Hartmann, Nicole;
- Baeriswyl, Lukas;
- Andreasen, Ditte;
- Bernard, Nathalie;
- Chen, Caifu;
- Cheo, David;
- D'Andrade, Petula;
- DeMayo, Mike;
- Dennis, Lucas;
- Derveaux, Stefaan;
- Feng, Yun;
- Fulmer-Smentek, Stephanie;
- Gerstmayer, Bernhard;
- Gouffon, Julia;
- Grimley, Chris;
- Lader, Eric;
- Lee, Kathy Y;
- Luo, Shujun;
- Mouritzen, Peter
Publication type:
Article
mRNA-Seq of Single Prostate Cancer Circulating Tumor Cells Reveals Recapitulation of Gene Expression and Pathways Found in Prostate Cancer.
Published in:
PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0049144
By:
- Cann, Gordon M.;
- Gulzar, Zulfiqar G.;
- Cooper, Samantha;
- Li, Robin;
- Luo, Shujun;
- Tat, Mai;
- Stuart, Sarah;
- Schroth, Gary;
- Srinivas, Sandhya;
- Ronaghi, Mostafa;
- Brooks, James D.;
- Talasaz, AmirAli H.
Publication type:
Article
Meraculous: de novo genome assembly with short paired-end reads.
Published in:
PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0023501
By:
- Chapman, Jarrod A.;
- Ho, Isaac;
- Sirisha Sunkara;
- Shujun Luo;
- Schroth, Gary P.;
- Rokhsar, Daniel S.
Publication type:
Article
Integrated Analysis of Gene Expression, CpG Island Methylation, and Gene Copy Number in Breast Cancer Cells by Deep Sequencing.
Published in:
PLoS ONE, 2011, v. 6, n. 2, p. 1, doi. 10.1371/journal.pone.0017490
By:
- Zhifu Sun;
- Asmann, Yan W.;
- Kalari, Krishna R.;
- Bot, Brian;
- Eckel-Passow, Jeanette E.;
- Baker, Tiffany R.;
- Carr, Jennifer M.;
- Khrebtukova, Irina;
- Luo, Shujun;
- Lu Zhang;
- Schroth, Gary P.;
- Perez, Edith A.;
- Thompson, E. Aubrey
Publication type:
Article
High-Throughput SuperSAGE for Digital Gene Expression Analysis of Multiple Samples Using Next Generation Sequencing.
Published in:
PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012010
By:
- Matsumura, Hideo;
- Yoshida, Kentaro;
- Luo, Shujun;
- Kimura, Eiji;
- Fujibe, Takahiro;
- Albertyn, Zayed;
- Barrero, Roberto A.;
- Krüger, Detlev H.;
- Kahl, Günter;
- Schroth, Gary P.;
- Terauchi, Ryohei
Publication type:
Article
Genomic Convergence Analysis of Schizophrenia: mRNA Sequencing Reveals Altered Synaptic Vesicular Transport in Post-Mortem Cerebellum.
Published in:
PLoS ONE, 2008, v. 3, n. 11, p. 1, doi. 10.1371/journal.pone.0003625
By:
- Mudge, Joann;
- Miller, Neil A.;
- Khrebtukova, Irina;
- Lindquist, Ingrid E.;
- May, Gregory D.;
- Huntley, Jim J.;
- Shujun Luo;
- Lu Zhang;
- van Velkinburgh, Jennifer C.;
- Farmer, Andrew D.;
- Lewis, Sharon;
- Beavis^1, William D.;
- Schilkey, Faye D.;
- Virk, Selene M.;
- Black, C. Forrest;
- Myers, M. Kathy;
- Mader, Lar C.;
- Langley, Ray J.;
- Utsey, John P.;
- Kim, Ryan W.
Publication type:
Article
High prevalence of focal and multi-focal somatic genetic variants in the human brain.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06331-w
By:
- Keogh, Michael J.;
- Wei, Wei;
- Aryaman, Juvid;
- Walker, Lauren;
- van den Ameele, Jelle;
- Coxhead, Jon;
- Wilson, Ian;
- Bashton, Matthew;
- Beck, Jon;
- West, John;
- Chen, Richard;
- Haudenschild, Christian;
- Bartha, Gabor;
- Luo, Shujun;
- Morris, Chris M.;
- Jones, Nick S.;
- Attems, Johannes;
- Chinnery, Patrick F.
Publication type:
Article
Alternative isoform regulation in human tissue transcriptomes.
Published in:
Nature, 2008, v. 456, n. 7221, p. 470, doi. 10.1038/nature07509
By:
- Wang, Eric T.;
- Sandberg, Rickard;
- Luo, Shujun;
- Khrebtukova, Irina;
- Zhang, Lu;
- Mayr, Christine;
- Kingsmore, Stephen F.;
- Schroth, Gary P.;
- Burge, Christopher B.
Publication type:
Article
Achieving high-sensitivity for clinical applications using augmented exome sequencing.
Published in:
Genome Medicine, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13073-015-0197-4
By:
- Patwardhan, Anil;
- Harris, Jason;
- Nan Leng;
- Bartha, Gabor;
- Church, Deanna M.;
- Shujun Luo;
- Haudenschild, Christian;
- Pratt, Mark;
- Zook, Justin;
- Salit, Marc;
- Tirch, Jeanie;
- Massimo Morra;
- Chervitz, Stephen;
- Ming Li;
- Clark, Michael;
- Garcia, Sarah;
- Chandratillake, Gemma;
- Kirk, Scott;
- Ashley, Euan;
- Snyder, Michael
Publication type:
Article
Global analysis of estrogen receptor beta binding to breast cancer cell genome reveals an extensive interplay with estrogen receptor alpha for target gene regulation.
Published in:
BMC Genomics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2164-12-36
By:
- Grober, Oli M. V.;
- Mutarelli, Margherita;
- Giurato, Giorgio;
- Ravo, Maria;
- Cicatiello, Luigi;
- De Filippo, Maria Rosaria;
- Ferraro, Lorenzo;
- Nassa, Giovanni;
- Papa, Maria Francesca;
- Paris, Ornella;
- Tarallo, Roberta;
- Shujun Luo;
- Schroth, Gary P.;
- Benes, Vladimir;
- Weisz, Alessandro
Publication type:
Article

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