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Robust estimation of protein expression ratios with lysate microarray technology.
- Published in:
- Bioinformatics, 2005, v. 21, n. 9, p. 1935, doi. 10.1093/bioinformatics/bti258
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- Publication type:
- Article
Growing genetic regulatory networks from seed genes.
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- Bioinformatics, 2004, v. 20, n. 8, p. 1241, doi. 10.1093/bioinformatics/bth074
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- Publication type:
- Article
Gene perturbation and intervention in probabilistic Boolean networks.
- Published in:
- Bioinformatics, 2002, v. 18, n. 10, p. 1319, doi. 10.1093/bioinformatics/18.10.1319
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- Publication type:
- Article
Binary analysis and optimization-based normalization of gene expression data.
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- Bioinformatics, 2002, v. 18, n. 4, p. 555, doi. 10.1093/bioinformatics/18.4.555
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- Publication type:
- Article
Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks.
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- Bioinformatics, 2002, v. 18, n. 2, p. 261, doi. 10.1093/bioinformatics/18.2.261
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- Publication type:
- Article
Book Review: Guide to Analysis of DNA Microarray Data
- Published in:
- 2004
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- Publication type:
- Book Review
Cell death as a trigger for morphogenesis.
- Published in:
- PLoS ONE, 2018, v. 13, n. 3, p. 1, doi. 10.1371/journal.pone.0191089
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- Publication type:
- Article
Using cell fate attractors to uncover transcriptional regulation of HL60 neutrophil differentiation.
- Published in:
- BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-20
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- Publication type:
- Article
POMO - Plotting Omics analysis results for Multiple Organisms.
- Published in:
- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-918
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- Publication type:
- Article
A Data Integration Framework for Prediction of Transcription Factor Targets.
- Published in:
- Annals of the New York Academy of Sciences, 2009, v. 1158, p. 205, doi. 10.1111/j.1749-6632.2008.03758.x
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- Publication type:
- Article
Association of BRCA1 and BRCA2 Mutations With Survival, Chemotherapy Sensitivity, and Gene Mutator Phenotype in Patients With Ovarian Cancer.
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- JAMA: Journal of the American Medical Association, 2011, v. 306, n. 14, p. 1557, doi. 10.1001/jama.2011.1456
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- Publication type:
- Article
Control of Stationary Behavior in Probabilistic Boolean Networks by Means Of Structural Intervention.
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- Journal of Biological Systems, 2002, v. 10, n. 4, p. 431, doi. 10.1142/S0218339002000706
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- Publication type:
- Article
SEQADAPT: an adaptable system for the tracking,storage and analysis of high throughputsequencing experiments.
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- BMC Bioinformatics, 2010, v. 11, p. 377, doi. 10.1186/1471-2105-11-377
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- Publication type:
- Article
Insulin-like growth factor binding protein 2 promotes ovarian cancer cell invasion.
- Published in:
- Molecular Cancer, 2005, v. 4, p. 7, doi. 10.1186/1476-4598-4-7
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- Publication type:
- Article
Propagating organization: an enquiry.
- Published in:
- Biology & Philosophy, 2008, v. 23, n. 1, p. 27
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- Publication type:
- Article
Using Incomplete Trios to Boost Confidence in Family Based Association Studies.
- Published in:
- Frontiers in Genetics, 2016, p. 1, doi. 10.3389/fgene.2016.00034
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- Publication type:
- Article
Identification of copy number variants in whole-genome data using Reference Coverage Profiles.
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- Frontiers in Genetics, 2015, v. 6, p. 1, doi. 10.3389/fgene.2015.00045
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- Publication type:
- Article
The Innate Immune Database (IIDB).
- Published in:
- BMC Immunology, 2008, v. 9, p. 1, doi. 10.1186/1471-2172-9-7
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- Publication type:
- Article
Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression.
- Published in:
- PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005347
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- Publication type:
- Article
Augmentation of Response to Chemotherapy by microRNA-506 Through Regulation of RAD51 in Serous Ovarian Cancers.
- Published in:
- JNCI: Journal of the National Cancer Institute, 2015, v. 107, n. 7, p. 1, doi. 10.1093/jnci/djv108
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- Publication type:
- Article
Augmentation of response to chemotherapy by microRNA-506 through regulation of RAD51 in serous ovarian cancers.
- Published in:
- 2015
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- Publication type:
- journal article
Clinical Significance of CTNNB1 Mutation and Wnt Pathway Activation in Endometrioid Endometrial Carcinoma.
- Published in:
- JNCI: Journal of the National Cancer Institute, 2014, v. 106, n. 9, p. 1, doi. 10.1093/jnci/dju245
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- Publication type:
- Article
Literature-based discovery of new candidates for drug repurposing.
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- Briefings in Bioinformatics, 2017, v. 18, n. 3, p. 488, doi. 10.1093/bib/bbw030
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- Publication type:
- Article
Patient-Specific Cell Communication Networks Associate With Disease Progression in Cancer.
- Published in:
- Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.667382
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- Publication type:
- Article
Epigenetic profiling for the molecular classification of metastatic brain tumors.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06715-y
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- Publication type:
- Article
Computational capabilities of a multicellular reservoir computing system.
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- PLoS ONE, 2023, v. 17, n. 4, p. 1, doi. 10.1371/journal.pone.0282122
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- Publication type:
- Article
P4‐103: CELL‐TYPE SPECIFIC MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER'S DISEASE.
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- Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2019, v. 15, p. P1314, doi. 10.1016/j.jalz.2019.06.3764
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- Publication type:
- Article
Adaptable data management for systems biology investigations.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-79
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- Publication type:
- Article
Systems biology driven software design for the research enterprise.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-295
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- Publication type:
- Article
Trade-off between Responsiveness and Noise Suppression in Biomolecular System Responses to Environmental Cues.
- Published in:
- PLoS Computational Biology, 2011, v. 7, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002091
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- Publication type:
- Article
Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics.
- Published in:
- PLoS Computational Biology, 2008, v. 4, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000021
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- Publication type:
- Article
Noise in a small genetic circuit that undergoes bifurcation.
- Published in:
- Complexity, 2005, v. 11, n. 1, p. 45, doi. 10.1002/cplx.20099
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- Publication type:
- Article
Discovery of driver non-coding splice-site-creating mutations in cancer.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19307-6
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- Publication type:
- Article
Information-Theoretic Analysis of the Dynamics of an Executable Biological Model.
- Published in:
- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0059303
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- Publication type:
- Article
Increasing Coverage of Transcription Factor Position Weight Matrices through Domain-level Homology.
- Published in:
- PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0042779
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- Publication type:
- Article
Integrated Analysis of Gene Expression and Tumor Nuclear Image Profiles Associated with Chemotherapy Response in Serous Ovarian Carcinoma.
- Published in:
- PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036383
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- Publication type:
- Article
Genome-Wide Analysis of Effectors of Peroxisome Biogenesis.
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- PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0011953
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- Publication type:
- Article
Bright Field Microscopy as an Alternative to Whole Cell Fluorescence in Automated Analysis of Macrophage Images.
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- PLoS ONE, 2009, v. 4, n. 10, p. 1, doi. 10.1371/journal.pone.0007497
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- Publication type:
- Article
Critical Dynamics in Genetic Regulatory Networks: Examples from Four Kingdoms.
- Published in:
- PLoS ONE, 2008, v. 3, n. 6, p. 1, doi. 10.1371/journal.pone.0002456
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- Publication type:
- Article
Probabilistic Inference of Transcription Factor Binding from Multiple Data Sources.
- Published in:
- PLoS ONE, 2008, v. 3, n. 3, p. 1, doi. 10.1371/journal.pone.0001820
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- Publication type:
- Article
MIIP haploinsufficiency induces chromosomal instability and promotes tumour progression in colorectal cancer.
- Published in:
- Journal of Pathology, 2017, v. 241, n. 1, p. 67, doi. 10.1002/path.4823
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- Publication type:
- Article
MiR-506 suppresses proliferation and induces senescence by directly targeting the CDK4/6- FOXM1 axis in ovarian cancer.
- Published in:
- Journal of Pathology, 2014, v. 233, n. 3, p. 308, doi. 10.1002/path.4348
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- Publication type:
- Article
Transcriptome and small RNA deep sequencing reveals deregulation of miRNA biogenesis in human glioma.
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- Journal of Pathology, 2013, v. 229, n. 3, p. 449, doi. 10.1002/path.4109
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- Publication type:
- Article
Pathway alterations during glioma progression revealed by reverse phase protein lysate arrays.
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- Proteomics, 2006, v. 6, n. 10, p. 2964, doi. 10.1002/pmic.200500555
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- Publication type:
- Article
Logic models to predict continuous outputs based on binary inputs with an application to personalized cancer therapy.
- Published in:
- Scientific Reports, 2016, p. 36812, doi. 10.1038/srep36812
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- Publication type:
- Article
Multiscale representation of genomic signals.
- Published in:
- Nature Methods, 2014, v. 11, n. 6, p. 689, doi. 10.1038/nmeth.2924
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- Publication type:
- Article
Gene-pair expression signatures reveal lineage control.
- Published in:
- Nature Methods, 2013, v. 10, n. 6, p. 577, doi. 10.1038/nmeth.2445
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- Publication type:
- Article
Flexibility of Boolean Network Reservoir Computers in Approximating Arbitrary Recursive and Non-Recursive Binary Filters.
- Published in:
- Entropy, 2018, v. 20, n. 12, p. 954, doi. 10.3390/e20120954
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- Publication type:
- Article
Toward mechanistic medical digital twins: some use cases in immunology.
- Published in:
- Frontiers in Digital Health, 2024, p. 1, doi. 10.3389/fdgth.2024.1349595
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- Publication type:
- Article
A framework towards digital twins for type 2 diabetes.
- Published in:
- Frontiers in Digital Health, 2024, p. 1, doi. 10.3389/fdgth.2024.1336050
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- Publication type:
- Article