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Gene regulatory networks in plants: learning causality from time and perturbation.
- Published in:
- Genome Biology, 2013, v. 14, n. 6, p. 123, doi. 10.1186/gb-2013-14-6-123
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- Publication type:
- Article
An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis.
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- BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-31
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- Publication type:
- Article
Pheniqs 2.0: accurate, high-performance Bayesian decoding and confidence estimation for combinatorial barcode indexing.
- Published in:
- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04267-5
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- Publication type:
- Article
Forgetful Forests: Data Structures for Machine Learning on Streaming Data under Concept Drift.
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- Algorithms, 2023, v. 16, n. 6, p. 278, doi. 10.3390/a16060278
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- Publication type:
- Article
A subgraph isomorphism algorithm and its application to biochemical data.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. Suppl 7, p. 1, doi. 10.1186/1471-2105-14-S7-S13
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- Publication type:
- Article
SING: Subgraph search In Non-homogeneousGraphs.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 96, doi. 10.1186/1471-2105-11-96
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- Publication type:
- Article
BestNeighbor: efficient evaluation of kNN queries on large time series databases.
- Published in:
- Knowledge & Information Systems, 2021, v. 63, n. 2, p. 349, doi. 10.1007/s10115-020-01518-4
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- Publication type:
- Article
Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-09522-1
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- Article
Complementary classification approaches for protein sequences.
- Published in:
- Protein Engineering, 1996, v. 9, n. 5, p. 381, doi. 10.1093/protein/9.5.381
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- Publication type:
- Article
ON THE EDITING DISTANCE BETWEEN UNDIRECTED ACYCLIC GRAPHS.
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- International Journal of Foundations of Computer Science, 1996, v. 7, n. 1, p. 43, doi. 10.1142/S0129054196000051
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- Publication type:
- Article
GraphFind: enhancing graph searching by low support data mining techniques.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-09-S4-S10
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- Publication type:
- Article
Negative Example Selection for Protein Function Prediction: The NoGO Database.
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- PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003644
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- Publication type:
- Article
A Systems Approach Uncovers Restrictions for Signal Interactions Regulating Genome-wide Responses to Nutritional Cues in Arabidopsis.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000326
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- Publication type:
- Article
Author Correction: OutPredict: multiple datasets can improve prediction of expression and inference of causality.
- Published in:
- 2020
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- Publication type:
- Correction Notice
OutPredict: multiple datasets can improve prediction of expression and inference of causality.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-63347-3
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- Publication type:
- Article
Bipartite networks represent causality better than simple networks: evidence, algorithms, and applications.
- Published in:
- Frontiers in Genetics, 2024, p. 1, doi. 10.3389/fgene.2024.1371607
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- Publication type:
- Article
Bipartite networks represent causality better than simple networks: evidence, algorithms, and applications.
- Published in:
- Frontiers in Genetics, 2024, p. 1, doi. 10.3389/fgene.2024.1371607
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- Publication type:
- Article
GRAPES: A Software for Parallel Searching on Biological Graphs Targeting Multi-Core Architectures.
- Published in:
- PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0076911
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- Publication type:
- Article
Rational Design of Temperature-Sensitive Alleles Using Computational Structure Prediction.
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- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0023947
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- Publication type:
- Article
ParCorr: efficient parallel methods to identify similar time series pairs across sliding windows.
- Published in:
- Data Mining & Knowledge Discovery, 2018, v. 32, n. 5, p. 1481, doi. 10.1007/s10618-018-0580-z
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- Publication type:
- Article
Fast analytical methods for finding significant labeled graph motifs.
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- Data Mining & Knowledge Discovery, 2018, v. 32, n. 2, p. 504, doi. 10.1007/s10618-017-0544-8
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- Publication type:
- Article
Inexpensive, non-invasive biomarkers predict Alzheimer transition using machine learning analysis of the Alzheimer's Disease Neuroimaging (ADNI) database.
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- PLoS ONE, 2020, v. 15, n. 7, p. 1, doi. 10.1371/journal.pone.0235663
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- Publication type:
- Article
SuperNoder: a tool to discover over-represented modular structures in networks.
- Published in:
- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2350-8
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- Publication type:
- Article
miR-Synth: a computational resource for the design of multi-site multi-target synthetic miRNAs.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 9, p. 5416, doi. 10.1093/nar/gku202
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- Publication type:
- Article
miR-Synth: a computational resource for the design of multi-site multi-target synthetic miRNAs.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 9, p. 5416
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- Publication type:
- Article
Phylogenetically diverse wild plant species use common biochemical strategies to thrive in the Atacama Desert.
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- Journal of Experimental Botany, 2024, v. 75, n. 11, p. 3596, doi. 10.1093/jxb/erae117
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- Publication type:
- Article
Fast Subgraph Matching Strategies Based on Pattern-Only Heuristics.
- Published in:
- Interdisciplinary Sciences: Computational Life Sciences, 2019, v. 11, n. 1, p. 21, doi. 10.1007/s12539-019-00323-0
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- Publication type:
- Article
andCloning ofcDNA and Its Phylogenetic Analysis.
- Published in:
- DNA & Cell Biology, 2005, v. 24, n. 2, p. 111, doi. 10.1089/dna.2005.24.111
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- Publication type:
- Article
EnsInfer: a simple ensemble approach to network inference outperforms any single method.
- Published in:
- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05231-1
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- Publication type:
- Article
Parametric Bayesian priors and better choice of negative examples improve protein function prediction.
- Published in:
- Bioinformatics, 2013, v. 29, n. 9, p. 1190, doi. 10.1093/bioinformatics/btt110
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- Publication type:
- Article
miR-EdiTar: a database of predicted A-to-I edited miRNA target sites.
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- Bioinformatics, 2012, v. 28, n. 23, p. 3166
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- Publication type:
- Article
Homology search for genes.
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- Bioinformatics, 2007, v. 23, n. 13, p. i97, doi. 10.1093/bioinformatics/btm225
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- Publication type:
- Article
Sungear: interactive visualization and functional analysis of genomic datasets.
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- Bioinformatics, 2007, v. 23, n. 2, p. 259, doi. 10.1093/bioinformatics/btl496
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- Publication type:
- Article
Predicting genome-wide redundancy using machine learning.
- Published in:
- BMC Evolutionary Biology, 2010, v. 10, p. 357, doi. 10.1186/1471-2148-10-357
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- Publication type:
- Article
Correction to: BugDoc Iterative debugging and explanation of pipeline executions.
- Published in:
- 2023
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- Publication type:
- Correction Notice
BugDoc: Iterative debugging and explanation of pipeline.
- Published in:
- VLDB Journal International Journal on Very Large Data Bases, 2023, v. 32, n. 1, p. 75, doi. 10.1007/s00778-022-00733-5
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- Publication type:
- Article
Products of mixed covering arrays of strength two.
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- Journal of Combinatorial Designs, 2006, v. 14, n. 2, p. 124, doi. 10.1002/jcd.20065
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- Publication type:
- Article
Insights into the genomic nitrate response using genetics and the Sungear Software System.
- Published in:
- Journal of Experimental Botany, 2007, v. 58, n. 9, p. 2359, doi. 10.1093/jxb/erm079
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- Publication type:
- Article
An expanded evaluation of protein function prediction methods shows an improvement in accuracy.
- Published in:
- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1037-6
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- Publication type:
- Article
TACITuS: transcriptomic data collector, integrator, and selector on big data platform.
- Published in:
- BMC Bioinformatics, 2019, v. 20, p. 1, doi. 10.1186/s12859-019-2912-4
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- Publication type:
- Article
AutoTag: automated metadata tagging for film post-production.
- Published in:
- Multimedia Tools & Applications, 2024, v. 83, n. 3, p. 6731, doi. 10.1007/s11042-023-15565-w
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- Publication type:
- Article
Machine Learning-Enhanced Pairs Trading.
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- Forecasting, 2024, v. 6, n. 2, p. 434, doi. 10.3390/forecast6020024
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- Publication type:
- Article
Fast methods for finding significant motifs on labelled multi-relational networks.
- Published in:
- Journal of Complex Networks, 2019, v. 7, n. 6, p. 817, doi. 10.1093/comnet/cnz008
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- Publication type:
- Article
GraphClust:: A Method for Clustering Database of Graphs.
- Published in:
- Journal of Information & Knowledge Management, 2008, v. 7, n. 4, p. 231, doi. 10.1142/S0219649208002093
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- Publication type:
- Article
VirtualPlant: A Software Platform to Support Systems Biology Research.
- Published in:
- Plant Physiology, 2010, v. 152, n. 2, p. 500, doi. 10.1104/pp.109.147025
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- Publication type:
- Article