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Single cell biology—a Keystone Symposia report.
Published in:
Annals of the New York Academy of Sciences, 2021, v. 1506, n. 1, p. 74, doi. 10.1111/nyas.14692
By:
- Cable, Jennifer;
- Elowitz, Michael B.;
- Domingos, Ana I.;
- Habib, Naomi;
- Itzkovitz, Shalev;
- Hamidzada, Homaira;
- Balzer, Michael S.;
- Yanai, Itai;
- Liberali, Prisca;
- Whited, Jessica;
- Streets, Aaron;
- Cai, Long;
- Stergachis, Andrew B.;
- Hong, Clarice Kit Yee;
- Keren, Leeat;
- Guilliams, Martin;
- Alon, Uri;
- Shalek, Alex K.;
- Hamel, Regan;
- Pfau, Sarah J.
Publication type:
Article
Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial cell states.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27322-4
By:
- Song, Hanbing;
- Weinstein, Hannah N. W.;
- Allegakoen, Paul;
- Wadsworth II, Marc H.;
- Xie, Jamie;
- Yang, Heiko;
- Castro, Ethan A.;
- Lu, Kevin L.;
- Stohr, Bradley A.;
- Feng, Felix Y.;
- Carroll, Peter R.;
- Wang, Bruce;
- Cooperberg, Matthew R.;
- Shalek, Alex K.;
- Huang, Franklin W.
Publication type:
Article
Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types.
Published in:
BMC Biology, 2018, v. 16, n. 1, p. 1, doi. 10.1186/s12915-018-0527-2
By:
- Mead, Benjamin E.;
- Ordovas-Montanes, Jose;
- Braun, Alexandra P.;
- Levy, Lauren E.;
- Bhargava, Prerna;
- Szucs, Matthew J.;
- Ammendolia, Dustin A.;
- MacMullan, Melanie A.;
- Yin, Xiaolei;
- Hughes, Travis K.;
- Wadsworth, Marc H.;
- Ahmad, Rushdy;
- Rakoff-Nahoum, Seth;
- Carr, Steven A.;
- Langer, Robert;
- Collins, James J.;
- Shalek, Alex K.;
- Karp, Jeffrey M.
Publication type:
Article
Regulation of X-linked gene expression during early mouse development by Rlim.
Published in:
eLife, 2016, p. 1, doi. 10.7554/eLife.19127
By:
- Feng Wang;
- Jong Dae Shin;
- Shea, Jeremy M.;
- Jun Yu;
- Bošković, Ana;
- Meg Byron;
- Xiaochun Zhu;
- Shalek, Alex K.;
- Regev, Aviv;
- Lawrence, Jeanne B.;
- Torres, Eduardo M.;
- Zhu, Lihua J.;
- Rando, Oliver J.;
- Bach, Ingolf
Publication type:
Article
Single-Cell Multiomics Reveals Clonal T-Cell Expansions and Exhaustion in Blastic Plasmacytoid Dendritic Cell Neoplasm.
Published in:
Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.809414
By:
- DePasquale, Erica A. K.;
- Ssozi, Daniel;
- Ainciburu, Marina;
- Good, Jonathan;
- Noel, Jenny;
- Villanueva, Martin A.;
- Couturier, Charles P.;
- Shalek, Alex K.;
- Aranki, Sary F.;
- Mallidi, Hari R.;
- Griffin, Gabriel K.;
- Lane, Andrew A.;
- van Galen, Peter
Publication type:
Article
Identification and Tracking of Alloreactive T Cell Clones in Rhesus Macaques Through the RM-scTCR-Seq Platform.
Published in:
Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2021.804932
By:
- Gerdemann, Ulrike;
- Fleming, Ryan A.;
- Kaminski, James;
- McGuckin, Connor;
- Rui, Xianliang;
- Lane, Jennifer F.;
- Keskula, Paula;
- Cagnin, Lorenzo;
- Shalek, Alex K.;
- Tkachev, Victor;
- Kean, Leslie S.
Publication type:
Article
Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial cell states.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27322-4
By:
- Song, Hanbing;
- Weinstein, Hannah N. W.;
- Allegakoen, Paul;
- Wadsworth II, Marc H.;
- Xie, Jamie;
- Yang, Heiko;
- Castro, Ethan A.;
- Lu, Kevin L.;
- Stohr, Bradley A.;
- Feng, Felix Y.;
- Carroll, Peter R.;
- Wang, Bruce;
- Cooperberg, Matthew R.;
- Shalek, Alex K.;
- Huang, Franklin W.
Publication type:
Article
Measuring kinetics and metastatic propensity of CTCs by blood exchange between mice.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25917-5
By:
- Hamza, Bashar;
- Miller, Alex B.;
- Meier, Lara;
- Stockslager, Max;
- Ng, Sheng Rong;
- King, Emily M.;
- Lin, Lin;
- DeGouveia, Kelsey L.;
- Mulugeta, Nolawit;
- Calistri, Nicholas L.;
- Strouf, Haley;
- Bray, Christina;
- Rodriguez, Felicia;
- Freed-Pastor, William A.;
- Chin, Christopher R.;
- Jaramillo, Grissel C.;
- Burger, Megan L.;
- Weinberg, Robert A.;
- Shalek, Alex K.;
- Jacks, Tyler
Publication type:
Article
Publisher Correction: Live cell tagging tracking and isolation for spatial transcriptomics using photoactivatable cell dyes.
Published in:
2021
By:
- Genshaft, Alex S.;
- Ziegler, Carly G. K.;
- Tzouanas, Constantine N.;
- Mead, Benjamin E.;
- Jaeger, Alex M.;
- Navia, Andrew W.;
- King, Ryan P.;
- Mana, Miyeko D.;
- Huang, Siyi;
- Mitsialis, Vanessa;
- Snapper, Scott B.;
- Yilmaz, Ömer H.;
- Jacks, Tyler;
- Van Humbeck, Jeffrey F.;
- Shalek, Alex K.
Publication type:
Correction Notice
Live cell tagging tracking and isolation for spatial transcriptomics using photoactivatable cell dyes.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25279-y
By:
- Genshaft, Alex S;
- Ziegler, Carly G. K.;
- Tzouanas, Constantine N.;
- Mead, Benjamin E.;
- Jaeger, Alex M.;
- Navia, Andrew W.;
- King, Ryan P.;
- Mana, Miyeko D.;
- Huang, Siyi;
- Mitsialis, Vanessa;
- Snapper, Scott B.;
- Yilmaz, Ömer H.;
- Jacks, Tyler;
- Van Humbeck, Jeffrey F.;
- Shalek, Alex K.
Publication type:
Article
Targeting Treg cells with GITR activation alleviates resistance to immunotherapy in murine glioblastomas.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22885-8
By:
- Amoozgar, Zohreh;
- Kloepper, Jonas;
- Ren, Jun;
- Tay, Rong En;
- Kazer, Samuel W.;
- Kiner, Evgeny;
- Krishnan, Shanmugarajan;
- Posada, Jessica M.;
- Ghosh, Mitrajit;
- Mamessier, Emilie;
- Wong, Christina;
- Ferraro, Gino B.;
- Batista, Ana;
- Wang, Nancy;
- Badeaux, Mark;
- Roberge, Sylvie;
- Xu, Lei;
- Huang, Peigen;
- Shalek, Alex K.;
- Fukumura, Dai
Publication type:
Article
Induction of metabolic quiescence defines the transitional to follicular B cell switch.
Published in:
Science Signaling, 2019, v. 12, n. 604, p. 1, doi. 10.1126/scisignal.aaw5573
By:
- Farmer, Jocelyn R.;
- Allard-Chamard, Hugues;
- Sun, Na;
- Ahmad, Maimuna;
- Bertocchi, Alice;
- Mahajan, Vinay S.;
- Aicher, Toby;
- Arnold, Johan;
- Benson, Mark D.;
- Morningstar, Jordan;
- Barmettler, Sara;
- Yuen, Grace;
- Murphy, Samuel J. H.;
- Walter, Jolan E.;
- Ghebremichael, Musie;
- Shalek, Alex K.;
- Batista, Facundo;
- Gerszten, Robert;
- Pillai, Shiv
Publication type:
Article
Author Correction: Systematic comparison of single-cell and single-nucleus RNA-sequencing methods.
Published in:
2020
By:
- Ding, Jiarui;
- Adiconis, Xian;
- Simmons, Sean K.;
- Kowalczyk, Monika S.;
- Hession, Cynthia C.;
- Marjanovic, Nemanja D.;
- Hughes, Travis K.;
- Wadsworth, Marc H.;
- Burks, Tyler;
- Nguyen, Lan T.;
- Kwon, John Y. H.;
- Barak, Boaz;
- Ge, William;
- Kedaigle, Amanda J.;
- Carroll, Shaina;
- Li, Shuqiang;
- Hacohen, Nir;
- Rozenblatt-Rosen, Orit;
- Shalek, Alex K.;
- Villani, Alexandra-Chloé
Publication type:
Correction Notice
Systematic comparison of single-cell and single-nucleus RNA-sequencing methods.
Published in:
Nature Biotechnology, 2020, v. 38, n. 6, p. 737, doi. 10.1038/s41587-020-0465-8
By:
- Ding, Jiarui;
- Adiconis, Xian;
- Simmons, Sean K.;
- Kowalczyk, Monika S.;
- Hession, Cynthia C.;
- Marjanovic, Nemanja D.;
- Hughes, Travis K.;
- Wadsworth, Marc H.;
- Burks, Tyler;
- Nguyen, Lan T.;
- Kwon, John Y. H.;
- Barak, Boaz;
- Ge, William;
- Kedaigle, Amanda J.;
- Carroll, Shaina;
- Li, Shuqiang;
- Hacohen, Nir;
- Rozenblatt-Rosen, Orit;
- Shalek, Alex K.;
- Villani, Alexandra-Chloé
Publication type:
Article
Whole-exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer.
Published in:
Nature Biotechnology, 2014, v. 32, n. 5, p. 479, doi. 10.1038/nbt.2892
By:
- Lohr, Jens G;
- Adalsteinsson, Viktor A;
- Cibulskis, Kristian;
- Choudhury, Atish D;
- Rosenberg, Mara;
- Cruz-Gordillo, Peter;
- Francis, Joshua M;
- Zhang, Cheng-Zhong;
- Shalek, Alex K;
- Satija, Rahul;
- Trombetta, John J;
- Lu, Diana;
- Tallapragada, Naren;
- Tahirova, Narmin;
- Kim, Sora;
- Blumenstiel, Brendan;
- Sougnez, Carrie;
- Lowe, Alarice;
- Wong, Bang;
- Auclair, Daniel
Publication type:
Article
Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli.
Published in:
Nature Biotechnology, 2013, v. 31, n. 4, p. 342, doi. 10.1038/nbt.2519
By:
- Gat-Viks, Irit;
- Chevrier, Nicolas;
- Wilentzik, Roni;
- Eisenhaure, Thomas;
- Raychowdhury, Raktima;
- Steuerman, Yael;
- Shalek, Alex K;
- Hacohen, Nir;
- Amit, Ido;
- Regev, Aviv
Publication type:
Article
Aggregated Mycobacterium tuberculosis Enhances the Inflammatory Response.
Published in:
Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.757134
By:
- Rodel, Hylton E.;
- Ferreira, Isabella A. T. M.;
- Ziegler, Carly G. K.;
- Ganga, Yashica;
- Bernstein, Mallory;
- Hwa, Shi-Hsia;
- Nargan, Kievershen;
- Lustig, Gila;
- Kaplan, Gilla;
- Noursadeghi, Mahdad;
- Shalek, Alex K.;
- Steyn, Adrie J. C.;
- Sigal, Alex
Publication type:
Article
High-Frequency, Functional HIV-Specific T-Follicular Helper and Regulatory Cells Are Present Within Germinal Centers in Children but Not Adults.
Published in:
Frontiers in Immunology, 2018, p. 1, doi. 10.3389/fimmu.2018.01975
By:
- Roider, Julia;
- Maehara, Takashi;
- Ngoepe, Abigail;
- Ramsuran, Duran;
- Muenchhoff, Maximilian;
- Adland, Emily;
- Aicher, Toby;
- Kazer, Samuel W.;
- Jooste, Pieter;
- Karim, Farina;
- Kuhn, Warren;
- Shalek, Alex K.;
- Ndung'u, Thumbi;
- Morris, Lynn;
- Moore, Penny L.;
- Pillai, Shiv;
- Kløverpris, Henrik;
- Goulder, Philip;
- Leslie, Alasdair
Publication type:
Article
Pro-inflammatory feedback loops define immune responses to pathogenic Lentivirus infection.
Published in:
Genome Medicine, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13073-024-01290-y
By:
- Wilk, Aaron J.;
- Marceau, Joshua O.;
- Kazer, Samuel W.;
- Fleming, Ira;
- Miao, Vincent N.;
- Galvez-Reyes, Jennyfer;
- Kimata, Jason T.;
- Shalek, Alex K.;
- Holmes, Susan;
- Overbaugh, Julie;
- Blish, Catherine A.
Publication type:
Article
Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-12780-8
By:
- Menon, Madhvi;
- Mohammadi, Shahin;
- Davila-Velderrain, Jose;
- Goods, Brittany A.;
- Cadwell, Tanina D.;
- Xing, Yu;
- Stemmer-Rachamimov, Anat;
- Shalek, Alex K.;
- Love, John Christopher;
- Kellis, Manolis;
- Hafler, Brian P.
Publication type:
Article
Selective expansion of myeloid and NK cells in humanized mice yields human-like vaccine responses.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07478-2
By:
- Douam, Florian;
- Ziegler, Carly G. K.;
- Hrebikova, Gabriela;
- Fant, Bruno;
- Leach, Robert;
- Parsons, Lance;
- Wang, Wei;
- Gaska, Jenna M.;
- Winer, Benjamin Y.;
- Heller, Brigitte;
- Shalek, Alex K.;
- Ploss, Alexander
Publication type:
Article
Vertical nanowire electrode arrays as a scalable platform for intracellular interfacing to neuronal circuits.
Published in:
Nature Nanotechnology, 2012, v. 7, n. 3, p. 180, doi. 10.1038/nnano.2011.249
By:
- Robinson, Jacob T.;
- Jorgolli, Marsela;
- Shalek, Alex K.;
- Yoon, Myung-Han;
- Gertner, Rona S.;
- Park, Hongkun
Publication type:
Article
Identification of drug candidates targeting monocyte reprogramming in people living with HIV.
Published in:
Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1275136
By:
- Knoll, Rainer;
- Bonaguro, Lorenzo;
- dos Santos, Je´ ssica C.;
- Warnat-Herresthal, Stefanie;
- Jacobs-Cleophas, Maartje C. P.;
- Blümel, Edda;
- Reusch, Nico;
- Horne, Arik;
- Herbert, Miriam;
- Nuesch-Germano, Melanie;
- Otten, Twan;
- van der Heijden, Wouter A.;
- van de Wijer, Lisa;
- Shalek, Alex K.;
- Händler, Kristian;
- Becker, Matthias;
- Beyer, Marc D.;
- Netea, Mihai G.;
- Joosten, Leo A. B.;
- van der Ven, Andre J. A. M.
Publication type:
Article
Follicle-intrinsic and spatially distinct molecular programs drive follicle rupture and luteinization during ex vivo mammalian ovulation.
Published in:
Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07074-9
By:
- Zaniker, Emily J.;
- Zhang, Jiyang;
- Russo, Daniela;
- Huang, Ruixu;
- Suritis, Kristine;
- Drake, Riley S.;
- Barlow-Smith, Esther;
- Shalek, Alex K.;
- Woodruff, Teresa K.;
- Xiao, Shuo;
- Goods, Brittany A.;
- Duncan, Francesca E.
Publication type:
Article
Human airway mast cells proliferate and acquire distinct inflammation-driven phenotypes during type 2 inflammation.
Published in:
Science Immunology, 2021, v. 6, n. 56, p. 1, doi. 10.1126/sciimmunol.abb7221
By:
- Dwyer, Daniel F.;
- Ordovas-Montanes, Jose;
- Allon, Samuel J.;
- Buchheit, Kathleen M.;
- Vukovic, Marko;
- Derakhshan, Tahereh;
- Feng, Chunli;
- Lai, Juying;
- Hughes, Travis K.;
- Nyquist, Sarah K.;
- Giannetti, Matthew P.;
- Berger, Bonnie;
- Bhattacharyya, Neil;
- Roditi, Rachel E.;
- Katz, Howard R.;
- Nawijn, Martijn C.;
- Berg, Marijn;
- van den Berge, Maarten;
- Laidlaw, Tanya M.;
- Shalek, Alex K.
Publication type:
Article
MR1-Restricted MAIT Cells From The Human Lung Mucosal Surface Have Distinct Phenotypic, Functional, and Transcriptomic Features That Are Preserved in HIV Infection.
Published in:
Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.631410
By:
- Khuzwayo, Sharon;
- Mthembu, Maphe;
- Meermeier, Erin W.;
- Prakadan, Sanjay M.;
- Kazer, Samuel W.;
- Bassett, Thierry;
- Nyamande, Kennedy;
- Khan, Dilshaad Fakey;
- Maharaj, Priya;
- Mitha, Mohammed;
- Suleman, Moosa;
- Mhlane, Zoey;
- Ramjit, Dirhona;
- Karim, Farina;
- Shalek, Alex K.;
- Lewinsohn, David M.;
- Ndung'u, Thumbi;
- Wong, Emily B.
Publication type:
Article
A microfluidic platform enabling single-cell RNA-seq of multigenerational lineages.
Published in:
Nature Communications, 2016, v. 7, n. 1, p. 10220, doi. 10.1038/ncomms10220
By:
- Kimmerling, Robert J.;
- Lee Szeto, Gregory;
- Li, Jennifer W.;
- Genshaft, Alex S.;
- Kazer, Samuel W.;
- Payer, Kristofor R.;
- de Riba Borrajo, Jacob;
- Blainey, Paul C.;
- Irvine, Darrell J.;
- Shalek, Alex K.;
- Manalis, Scott R.
Publication type:
Article
Augmentation of HIV-specific T cell function by immediate treatment of hyperacute HIV-1 infection.
Published in:
Science Translational Medicine, 2019, v. 11, n. 493, p. N.PAG, doi. 10.1126/scitranslmed.aau0528
By:
- Ndhlovu, Zaza M.;
- Kazer, Samuel W.;
- Nkosi, Thandeka;
- Ogunshola, Funsho;
- Muema, Daniel M.;
- Anmole, Gursev;
- Swann, Shayda A.;
- Moodley, Amber;
- Dong, Krista;
- Reddy, Tarylee;
- Brockman, Mark A.;
- Shalek, Alex K.;
- Ndung'u, Thumbi;
- Walker, Bruce D.
Publication type:
Article
Single-cell analyses to tailor treatments.
Published in:
Science Translational Medicine, 2017, v. 9, n. 408, p. 1, doi. 10.1126/scitranslmed.aan4730
By:
- Shalek, Alex K.;
- Benson, Mikael
Publication type:
Article
MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data.
Published in:
Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0844-5
By:
- Finak, Greg;
- McDavid, Andrew;
- Masanao Yajima;
- Jingyuan Deng;
- Gersuk, Vivian;
- Shalek, Alex K.;
- Slichter, Chloe K.;
- Miller, Hannah W.;
- Juliana McElrath, M.;
- Prlic, Martin;
- Linsley, Peter S.;
- Gottardo, Raphael
Publication type:
Article
Marrying microfluidics and microwells for parallel, high-throughput single-cell genomics
Published in:
Genome Biology, 2015, v. 16, n. 1, p. 129, doi. 10.1186/s13059-015-0695-0
By:
- Wadsworth II, Marc H.;
- Hughes, Travis K.;
- Shalek, Alex K.
Publication type:
Article
Comparative analysis of cell–cell communication at single-cell resolution.
Published in:
Nature Biotechnology, 2024, v. 42, n. 3, p. 470, doi. 10.1038/s41587-023-01782-z
By:
- Wilk, Aaron J.;
- Shalek, Alex K.;
- Holmes, Susan;
- Blish, Catherine A.
Publication type:
Article
Erratum: Deconstructing transcriptional heterogeneity in pluripotent stem cells.
Published in:
Nature, 2015, v. 519, n. 7541, p. 118, doi. 10.1038/nature14150
By:
- Kumar, Roshan M.;
- Cahan, Patrick;
- Shalek, Alex K.;
- Satija, Rahul;
- DaleyKeyser, A. Jay;
- Li, Hu;
- Zhang, Jin;
- Pardee, Keith;
- Gennert, David;
- Trombetta, John J.;
- Ferrante, Thomas C.;
- Regev, Aviv;
- Daley, George Q.;
- Collins, James J.
Publication type:
Article
Deconstructing transcriptional heterogeneity in pluripotent stem cells.
Published in:
Nature, 2014, v. 516, n. 7529, p. 56, doi. 10.1038/nature13920
By:
- Kumar, Roshan M.;
- Pardee, Keith;
- Collins, James J.;
- Cahan, Patrick;
- Zhang, Jin;
- Daley, George Q.;
- Shalek, Alex K.;
- Satija, Rahul;
- Gennert, David;
- Trombetta, John J.;
- Jay DaleyKeyser, A.;
- Ferrante, Thomas C.;
- Li, Hu;
- Regev, Aviv
Publication type:
Article
Single-cell RNA-seq reveals dynamic paracrine control of cellular variation.
Published in:
Nature, 2014, v. 510, n. 7505, p. 363, doi. 10.1038/nature13437
By:
- Shalek, Alex K.;
- Satija, Rahul;
- Shuga, Joe;
- Trombetta, John J.;
- Gennert, Dave;
- Lu, Diana;
- Chen, Peilin;
- Gertner, Rona S.;
- Gaublomme, Jellert T.;
- Yosef, Nir;
- Schwartz, Schraga;
- Fowler, Brian;
- Weaver, Suzanne;
- Wang, Jing;
- Wang, Xiaohui;
- Ding, Ruihua;
- Raychowdhury, Raktima;
- Friedman, Nir;
- Hacohen, Nir;
- Park, Hongkun
Publication type:
Article
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells.
Published in:
Nature, 2013, v. 498, n. 7453, p. 236, doi. 10.1038/nature12172
By:
- Shalek, Alex K.;
- Satija, Rahul;
- Adiconis, Xian;
- Gertner, Rona S.;
- Gaublomme, Jellert T.;
- Raychowdhury, Raktima;
- Schwartz, Schraga;
- Yosef, Nir;
- Malboeuf, Christine;
- Lu, Diana;
- Trombetta, John J.;
- Gennert, Dave;
- Gnirke, Andreas;
- Goren, Alon;
- Hacohen, Nir;
- Levin, Joshua Z.;
- Park, Hongkun;
- Regev, Aviv
Publication type:
Article
Dynamic regulatory network controlling T<sub>H</sub>17 cell differentiation.
Published in:
Nature, 2013, v. 496, n. 7446, p. 461, doi. 10.1038/nature11981
By:
- Yosef, Nir;
- Shalek, Alex K.;
- Gaublomme, Jellert T.;
- Jin, Hulin;
- Lee, Youjin;
- Awasthi, Amit;
- Wu, Chuan;
- Karwacz, Katarzyna;
- Xiao, Sheng;
- Jorgolli, Marsela;
- Gennert, David;
- Satija, Rahul;
- Shakya, Arvind;
- Lu, Diana Y.;
- Trombetta, John J.;
- Pillai, Meenu R.;
- Ratcliffe, Peter J.;
- Coleman, Mathew L.;
- Bix, Mark;
- Tantin, Dean
Publication type:
Article
A Reproducibility-Based Computational Framework Identifies an Inducible, Enhanced Antiviral State in Dendritic Cells from HIV-1 Elite Controllers.
Published in:
Genome Biology, 2018, v. 19, p. 1, doi. 10.1186/s13059-017-1385-x
By:
- Martin-Gayo, Enrique;
- Cole, Michael B.;
- Kolb, Kellie E.;
- Ouyang, Zhengyu;
- Cronin, Jacqueline;
- Kazer, Samuel W.;
- Ordovas-Montanes, Jose;
- Lichterfeld, Mathias;
- Walker, Bruce D.;
- Yosef, Nir;
- Shalek, Alex K.;
- Yu, Xu G.
Publication type:
Article
Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reaction.
Published in:
Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1045-6
By:
- Genshaft, Alex S.;
- Shuqiang Li;
- Gallant, Caroline J.;
- Darmanis, Spyros;
- Prakadan, Sanjay M.;
- Ziegler, Carly G. K.;
- Lundberg, Martin;
- Fredriksson, Simon;
- Hong, Joyce;
- Regev, Aviv;
- Livak, Kenneth J.;
- Landegren, Ulf;
- Shalek, Alex K.
Publication type:
Article
B cell heterogeneity in human tuberculosis highlights compartment-specific phenotype and functional roles.
Published in:
Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06282-7
By:
- Krause, Robert;
- Ogongo, Paul;
- Tezera, Liku;
- Ahmed, Mohammed;
- Mbano, Ian;
- Chambers, Mark;
- Ngoepe, Abigail;
- Magnoumba, Magalli;
- Muema, Daniel;
- Karim, Farina;
- Khan, Khadija;
- Lumamba, Kapongo;
- Nargan, Kievershen;
- Madansein, Rajhmun;
- Steyn, Adrie;
- Shalek, Alex K.;
- Elkington, Paul;
- Leslie, Al
Publication type:
Article
Tobacco smoke exposure recruits inflammatory airspace monocytes that establish permissive lung niches for Mycobacterium tuberculosis.
Published in:
Science Translational Medicine, 2023, v. 15, n. 725, p. 1, doi. 10.1126/scitranslmed.adg3451
By:
- Corleis, Björn;
- Tzouanas, Constantine N.;
- Wadsworth II, Marc H.;
- Cho, Josalyn L.;
- Linder, Alice H.;
- Schiff, Abigail E.;
- Zessin, Björn;
- Stei, Fabian;
- Dorhoi, Anca;
- Dickey, Amy K.;
- Medoff, Benjamin D.;
- Shalek, Alex K.;
- Kwon, Douglas S.
Publication type:
Article
Linking single-cell measurements of mass, growth rate, and gene expression.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1576-0
By:
- Kimmerling, Robert J.;
- Prakadan, Sanjay M.;
- Gupta, Alejandro J.;
- Calistri, Nicholas L.;
- Stevens, Mark M.;
- Olcum, Selim;
- Cermak, Nathan;
- Drake, Riley S.;
- Pelton, Kristine;
- De Smet, Frederik;
- Ligon, Keith L.;
- Shalek, Alex K.;
- Manalis, Scott R.
Publication type:
Article
Functional compensation precedes recovery of tissue mass following acute liver injury.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-19558-3
By:
- Walesky, Chad M.;
- Kolb, Kellie E.;
- Winston, Carolyn L.;
- Henderson, Jake;
- Kruft, Benjamin;
- Fleming, Ira;
- Ko, Sungjin;
- Monga, Satdarshan P.;
- Mueller, Florian;
- Apte, Udayan;
- Shalek, Alex K.;
- Goessling, Wolfram
Publication type:
Article
Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18320-z
By:
- Berger, Emily;
- Yorukoglu, Deniz;
- Zhang, Lillian;
- Nyquist, Sarah K.;
- Shalek, Alex K.;
- Kellis, Manolis;
- Numanagić, Ibrahim;
- Berger, Bonnie
Publication type:
Article
Identification and characterization of the T cell receptor (TCR) repertoire of the cynomolgus macaque (Macaca Fascicularis).
Published in:
BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08867-0
By:
- Jaiswal, Swati;
- Nyquist, Sarah K.;
- Boyce, Shayla;
- Jivanjee, Tasneem;
- Ibrahim, Samira;
- Bromley, Joshua D.;
- Gatter, G. James;
- Gideon, Hannah;
- Patel, Kush;
- Ganchua, Sharie Keanne;
- Berger, Bonnie;
- Fortune, Sarah M.;
- Flynn, JoAnne L.;
- Shalek, Alex K.;
- Behar, Samuel M.
Publication type:
Article

Found: 45