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Gene set differential analysis of time course expression profiles via sparse estimation in functional logistic model with application to time-dependent biomarker detection.
- Published in:
- 2016
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- Publication type:
- journal article
Predicting Japanese Kampo formulas by analyzing database of medical records: a preliminary observational study.
- Published in:
- 2016
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- Publication type:
- journal article
Estimating gene regulatory networks and protein–protein interactions of Saccharomyces cerevisiae from multiple genome-wide data.
- Published in:
- Bioinformatics, 2005, v. 21, p. ii206, doi. 10.1093/bioinformatics/bti1133
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- Publication type:
- Article
Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs.
- Published in:
- Scientific Reports, 2015, p. 13076, doi. 10.1038/srep13076
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- Publication type:
- Article
The miR-199a/Brm/EGR1 axis is a determinant of anchorage-independent growth in epithelial tumor cell lines.
- Published in:
- Scientific Reports, 2015, p. 8428, doi. 10.1038/srep08428
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- Publication type:
- Article
Clinical significance of prediabetes, undiagnosed diabetes and diagnosed diabetes on critical outcomes in COVID‐19: Integrative analysis from the Japan COVID‐19 task force.
- Published in:
- Diabetes, Obesity & Metabolism, 2023, v. 25, n. 1, p. 144, doi. 10.1111/dom.14857
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- Publication type:
- Article
Detection of APC mosaicism by next-generation sequencing in an FAP patient.
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- Journal of Human Genetics, 2015, v. 60, n. 5, p. 227, doi. 10.1038/jhg.2015.14
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- Publication type:
- Article
Definition of a Dietary Pattern Expressing the Intake of Vegetables and Fruits and Its Association with Intestinal Microbiota.
- Published in:
- Nutrients, 2023, v. 15, n. 9, p. 2104, doi. 10.3390/nu15092104
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- Publication type:
- Article
Association between Nutrients and Visceral Fat in Healthy Japanese Adults: A 2-Year Longitudinal Study Brief Title: Micronutrients Associated with Visceral Fat Accumulation.
- Published in:
- Nutrients, 2019, v. 11, n. 11, p. 2698, doi. 10.3390/nu11112698
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- Publication type:
- Article
Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks.
- Published in:
- BMC Systems Biology, 2015, v. 9, n. 1, p. 1, doi. 10.1186/s12918-015-0154-2
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- Publication type:
- Article
Computational gene network analysis reveals TNF-induced angiogenesis.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-6-S2-S12
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- Publication type:
- Article
Recursive regularization for inferring gene networks from time-course gene expression profiles.
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- BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-41
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- Publication type:
- Article
Vasohibin-1 is identified as a master-regulator of endothelial cell apoptosis using gene network analysis.
- Published in:
- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-23
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- Publication type:
- Article
Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing.
- Published in:
- BMC Genomics, 2012, v. 13, n. Suppl 1, p. 1, doi. 10.1186/1471-2164-13-S1-S6
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- Publication type:
- Article
A microarray analysis of gnotobiotic mice indicating that microbial exposure during the neonatal period plays an essential role in immune system development.
- Published in:
- BMC Genomics, 2012, v. 13, n. 1, p. 335, doi. 10.1186/1471-2164-13-335
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- Publication type:
- Article
Genome-wide causal mediation analysis identifies genetic loci associated with uterine fibroids mediated by age at menarche.
- Published in:
- Human Reproduction, 2022, v. 37, n. 10, p. 2197, doi. 10.1093/humrep/deac136
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- Publication type:
- Article
Genome-wide causal mediation analysis identifies genetic loci associated with uterine fibroids mediated by age at menarche.
- Published in:
- 2022
- By:
- Publication type:
- journal article
Metagenomic analysis of bacterial species in tongue microbiome of current and never smokers.
- Published in:
- NPJ Biofilms & Microbiomes, 2020, v. 6, n. 1, p. 1, doi. 10.1038/s41522-020-0121-6
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- Publication type:
- Article
Blautia genus associated with visceral fat accumulation in adults 20–76 years of age.
- Published in:
- NPJ Biofilms & Microbiomes, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41522-019-0101-x
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- Publication type:
- Article
Antibody Profiling of Microbial Antigens in the Blood of COVID-19 mRNA Vaccine Recipients Using Microbial Protein Microarrays.
- Published in:
- Vaccines, 2023, v. 11, n. 11, p. 1694, doi. 10.3390/vaccines11111694
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- Publication type:
- Article
Comprehensive phosphoproteome analysis unravels the core signaling network that initiates the earliest synapse pathology in preclinical Alzheimer’s disease brain.
- Published in:
- Human Molecular Genetics, 2015, v. 24, n. 2, p. 540, doi. 10.1093/hmg/ddu475
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- Publication type:
- Article
Systems biology analysis of Drosophila in vivo screen data elucidates core networks for DNA damage repair in SCA1.
- Published in:
- Human Molecular Genetics, 2014, v. 23, n. 5, p. 1345, doi. 10.1093/hmg/ddt524
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- Publication type:
- Article
Targeting Tyro3 ameliorates a model of PGRNmutant FTLD-TDP via tau-mediated synaptic pathology.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-02821-z
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- Publication type:
- Article
Targeting BIG3-PHB2 interaction to overcome tamoxifen resistance in breast cancer cells.
- Published in:
- Nature Communications, 2013, v. 4, n. 9, p. 2443, doi. 10.1038/ncomms3443
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- Publication type:
- Article
Xprediction: Explainable EGFR-TKIs response prediction based on drug sensitivity specific gene networks.
- Published in:
- PLoS ONE, 2022, v. 17, n. 5, p. 1, doi. 10.1371/journal.pone.0261630
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- Publication type:
- Article
COVID-19 testing systems and their effectiveness in small, semi-isolated groups for sports events.
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- PLoS ONE, 2022, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0266197
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- Publication type:
- Article
A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-233
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- Publication type:
- Article
Enhancing breakpoint resolution with deep segmentation model: A general refinement method for read-depth based structural variant callers.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009186
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- Publication type:
- Article
Bayesian information criteria and smoothing parameter selection in radial basis function networks.
- Published in:
- Biometrika, 2004, v. 91, n. 1, p. 27, doi. 10.1093/biomet/91.1.27
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- Publication type:
- Article
Cross-Border Transmissions of the Delta Substrain AY.29 During Tokyo Olympic and Paralympic Games.
- Published in:
- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.883849
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- Publication type:
- Article
Correction: Microbial Gene Ontology informed deep neural network for microbe functionality discovery in human diseases.
- Published in:
- 2023
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- Publication type:
- Correction Notice
Trop-2 in Upper Tract Urothelial Carcinoma.
- Published in:
- Current Oncology, 2022, v. 29, n. 6, p. 3911, doi. 10.3390/curroncol29060312
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- Publication type:
- Article
Sequence-specific bias correction for RNA-seq data using recurrent neural networks.
- Published in:
- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-016-3262-5
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- Publication type:
- Article
A BETWEEN-CLASS OVERLAPPING FILTER-BASED METHOD FOR TRANSCRIPTOME DATA ANALYSIS.
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- Journal of Bioinformatics & Computational Biology, 2012, v. 10, n. 5, p. -1, doi. 10.1142/S0219720012500102
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- Publication type:
- Article
UTILIZING EVOLUTIONARY INFORMATION AND GENE EXPRESSION DATA FOR ESTIMATING GENE NETWORKS WITH BAYESIAN NETWORK MODELS.
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- Journal of Bioinformatics & Computational Biology, 2005, v. 3, n. 6, p. 1295, doi. 10.1142/S0219720005001569
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- Publication type:
- Article
COMBINING MICROARRAYS AND BIOLOGICAL KNOWLEDGE FOR ESTIMATING GENE NETWORKS VIA BAYESIAN NETWORKS.
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- Journal of Bioinformatics & Computational Biology, 2004, v. 2, n. 1, p. 77, doi. 10.1142/S021972000400048X
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- Publication type:
- Article
Use of Gene Networks for Identifying and Validating Drug Targets.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2003, v. 1, n. 3, p. 459, doi. 10.1142/S0219720003000290
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- Publication type:
- Article
BAYESIAN NETWORK AND NONPARAMETRIC HETEROSCEDASTIC REGRESSION FOR NONLINEAR MODELING OF GENETIC NETWORK.
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- Journal of Bioinformatics & Computational Biology, 2003, v. 1, n. 2, p. 231, doi. 10.1142/S0219720003000071
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- Publication type:
- Article
Genetic analysis of low-grade adenosquamous carcinoma of the breast progressing to high-grade metaplastic carcinoma.
- Published in:
- Breast Cancer Research & Treatment, 2023, v. 202, n. 3, p. 563, doi. 10.1007/s10549-023-07078-9
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- Publication type:
- Article
Data science and precision health care.
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- Nutrition Reviews, 2020, v. 78, p. 53, doi. 10.1093/nutrit/nuaa110
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- Publication type:
- Article
Metagenomic profiling of gut microbiome in early chronic kidney disease.
- Published in:
- Nephrology Dialysis Transplantation, 2021, v. 36, n. 9, p. 1675, doi. 10.1093/ndt/gfaa122
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- Publication type:
- Article
Zero-shot-capable identification of phage–host relationships with whole-genome sequence representation by contrastive learning.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 5, p. 1, doi. 10.1093/bib/bbad239
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- Publication type:
- Article
iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 4, p. 1, doi. 10.1093/bib/bbad240
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- Publication type:
- Article
Inferring gene networks from time series microarray data using dynamic Bayesian networks.
- Published in:
- Briefings in Bioinformatics, 2003, v. 4, n. 3, p. 228, doi. 10.1093/bib/4.3.228
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- Publication type:
- Article
Comprehensive information-based differential gene regulatory networks analysis (CIdrgn): Application to gastric cancer and chemotherapy-responsive gene network identification.
- Published in:
- PLoS ONE, 2023, v. 18, n. 8, p. 1, doi. 10.1371/journal.pone.0286044
- By:
- Publication type:
- Article
Microbial Gene Ontology informed deep neural network for microbe functionality discovery in human diseases.
- Published in:
- PLoS ONE, 2023, v. 18, n. 8, p. 1, doi. 10.1371/journal.pone.0290307
- By:
- Publication type:
- Article
Use of Gene Networks from Full Genome Microarray Libraries to Identify Functionally Relevant Drug-affected Genes and Gene Regulation Cascades.
- Published in:
- DNA Research, 2003, v. 10, n. 1, p. 19, doi. 10.1093/dnares/10.1.19
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- Publication type:
- Article
Cost-effective length and timing of school closure during an influenza pandemic depend on the severity.
- Published in:
- Theoretical Biology & Medical Modelling, 2014, v. 11, n. 1, p. 1, doi. 10.1186/1742-4682-11-5
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- Publication type:
- Article
Gene set-based module discovery in the breast cancer transcriptome.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-71
- By:
- Publication type:
- Article
Circulating cell-free DNA in the peripheral blood plasma of patients is an informative biomarker for multiple myeloma relapse.
- Published in:
- International Journal of Clinical Oncology, 2021, v. 26, n. 11, p. 2142, doi. 10.1007/s10147-021-01991-z
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- Publication type:
- Article