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Structure-based prediction of HDAC6 substrates validated by enzymatic assay reveals determinants of promiscuity and detects new potential substrates.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-05681-2
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- Publication type:
- Article
Indirect ELISA-based approach for comparative measurement of high-affinity cohesin-dockerin interactions Indirect ELISA-based approach for comparative measurement of high-affinity cohesin-dockerin interactions.
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- Journal of Molecular Recognition, 2012, v. 25, n. 11, p. 616, doi. 10.1002/jmr.2178
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- Publication type:
- Article
Myelin-associated glycoprotein gene mutation causes Pelizaeus-Merzbacher disease-like disorder.
- Published in:
- 2015
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- Publication type:
- journal article
Peptiderive server: derive peptide inhibitors from protein-protein interactions.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. W1, p. W536, doi. 10.1093/nar/gkw385
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- Publication type:
- Article
Rosetta FlexPepDock web server—high resolution modeling of peptide–protein interactions.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W249, doi. 10.1093/nar/gkr431
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- Publication type:
- Article
Fractured genes: a novel genomic arrangement involving new split inteins and a new homing endonuclease family.
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- Nucleic Acids Research, 2009, v. 37, n. 8, p. 2560, doi. 10.1093/nar/gkp095
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- Publication type:
- Article
Harnessing protein folding neural networks for peptide–protein docking.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27838-9
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- Publication type:
- Article
Structural basis for UFM1 transfer from UBA5 to UFC1.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25994-6
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- Publication type:
- Article
Post-translational modifications reshape the antigenic landscape of the MHC I immunopeptidome in tumors.
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- Nature Biotechnology, 2023, v. 41, n. 2, p. 239, doi. 10.1038/s41587-022-01464-2
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- Publication type:
- Article
MinD-RNase E interplay controls localization of polar mRNAs in E. coli.
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- EMBO Journal, 2024, v. 43, n. 4, p. 637, doi. 10.1038/s44318-023-00026-9
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- Publication type:
- Article
Rosetta FlexPepDock ab-initio: Simultaneous Folding, Docking and Refinement of Peptides onto Their Receptors.
- Published in:
- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0018934
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- Publication type:
- Article
Detection of peptide-binding sites on protein surfaces: The first step toward the modeling and targeting of peptide-mediated interactions.
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- Proteins, 2014, v. 82, n. 7, p. 1550, doi. 10.1002/prot.24579
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- Publication type:
- Article
Detection of peptide-binding sites on protein surfaces: The first step toward the modeling and targeting of peptide-mediated interactions.
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- Proteins, 2013, v. 81, n. 12, p. 2096, doi. 10.1002/prot.24422
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- Publication type:
- Article
Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27.
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- Proteins, 2013, v. 81, n. 12, p. 2201, doi. 10.1002/prot.24425
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- Publication type:
- Article
Can self-inhibitory peptides be derived from the interfaces of globular protein-protein interactions?
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- Proteins, 2010, v. 78, n. 15, p. 3140, doi. 10.1002/prot.22785
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- Publication type:
- Article
Sub-angstrom modeling of complexes between flexible peptides and globular proteins.
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- Proteins, 2010, v. 78, n. 9, p. 2029, doi. 10.1002/prot.22716
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- Publication type:
- Article
On the use of structural templates for high-resolution docking.
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- Proteins, 2010, v. 78, n. 8, p. 1939, doi. 10.1002/prot.22710
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- Publication type:
- Article
Discrimination of near-native structures in protein-protein docking by testing the stability of local minima.
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- Proteins, 2008, v. 72, n. 3, p. 993, doi. 10.1002/prot.21997
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- Publication type:
- Article
Assessing the energy landscape of CAPRI targets by FunHunt.
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- Proteins, 2007, v. 69, n. 4, p. 809, doi. 10.1002/prot.21736
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- Publication type:
- Article
RosettaDock in CAPRI rounds 6-12.
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- Proteins, 2007, v. 69, n. 4, p. 758, doi. 10.1002/prot.21684
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- Publication type:
- Article
Progress in protein-protein docking: Atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
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- Proteins, 2005, v. 60, n. 2, p. 187, doi. 10.1002/prot.20556
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- Publication type:
- Article
Proteinprotein docking predictions for the CAPRI experiment.
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- Proteins, 2003, v. 52, n. 1, p. 118, doi. 10.1002/prot.10384
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- Publication type:
- Article
Conserved residue clustering and protein structure prediction.
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- Proteins, 2003, v. 52, n. 2, p. 225, doi. 10.1002/prot.10365
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- Publication type:
- Article
Rosetta predictions in CASP5: Successes, failures, and prospects for complete automation.
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- Proteins, 2003, v. 53, n. S6, p. 457, doi. 10.1002/prot.10552
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- Publication type:
- Article
Examination of possible structural constraints of MHC-binding peptides by assessment of their native structure within their source proteins.
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- Proteins, 2001, v. 45, n. 1, p. 47, doi. 10.1002/prot.1122
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- Publication type:
- Article
Protein language models can capture protein quaternary state.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05549-w
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- Publication type:
- Article
Structural study of UFL1‐UFC1 interaction uncovers the role of UFL1 N‐terminal helix in ufmylation.
- Published in:
- EMBO Reports, 2023, v. 24, n. 12, p. 1, doi. 10.15252/embr.202356920
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- Publication type:
- Article
Mitochondrial complex IV deficiency, caused by mutated COX6B1, is associated with encephalomyopathy, hydrocephalus and cardiomyopathy.
- Published in:
- European Journal of Human Genetics, 2015, v. 23, n. 2, p. 159, doi. 10.1038/ejhg.2014.85
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- Publication type:
- Article
Evolving Dual Targeting of a Prokaryotic Protein in Yeast.
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- Molecular Biology & Evolution, 2013, v. 30, n. 7, p. 1563, doi. 10.1093/molbev/mst039
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- Publication type:
- Article
Phosphorylation of the WWOX Protein Regulates Its Interaction with p73.
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- ChemBioChem, 2020, v. 21, n. 13, p. 1843, doi. 10.1002/cbic.202000032
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- Publication type:
- Article
A unique PRDM13-associated variant in a Georgian Jewish family with probable North Carolina macular dystrophy and the possible contribution of a unique CFH variant.
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- Molecular Vision, 2020, v. 26, p. 299
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- Publication type:
- Article
Systematic discovery of protein interaction interfaces using AlphaFold and experimental validation.
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- Molecular Systems Biology, 2024, v. 20, n. 2, p. 75, doi. 10.1038/s44320-023-00005-6
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- Publication type:
- Article
Identification of a Novel Class of Farnesylation Targets by Structure-Based Modeling of Binding Specificity.
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- PLoS Computational Biology, 2011, v. 7, n. 10, p. 1, doi. 10.1371/journal.pcbi.1002170
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- Publication type:
- Article
Rapid Sampling of Molecular Motions with Prior Information Constraints.
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- PLoS Computational Biology, 2009, v. 5, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000295
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- Publication type:
- Article
Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study.
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- Proteomics, 2023, v. 23, n. 17, p. 1, doi. 10.1002/pmic.202200323
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- Publication type:
- Article
Who Binds Better? Let Alphafold2 Decide!
- Published in:
- Angewandte Chemie, 2023, v. 135, n. 28, p. 1, doi. 10.1002/ange.202303526
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- Publication type:
- Article
Titelbild: Eine vielseitige synthetische Affinitätssonde zur hochaufgelösten Visualisierung hemmender Synapsen und neuronaler Netzwerke (Angew. Chem. 30/2022).
- Published in:
- Angewandte Chemie, 2022, v. 134, n. 30, p. 1, doi. 10.1002/ange.202207941
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- Publication type:
- Article
Eine vielseitige synthetische Affinitätssonde zur hochaufgelösten Visualisierung hemmender Synapsen und neuronaler Netzwerke**.
- Published in:
- Angewandte Chemie, 2022, v. 134, n. 30, p. 1, doi. 10.1002/ange.202202078
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- Publication type:
- Article
MYORG is associated with recessive primary familial brain calcification.
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- Annals of Clinical & Translational Neurology, 2019, v. 6, n. 1, p. 106, doi. 10.1002/acn3.684
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- Publication type:
- Article
Host FIH-Mediated Asparaginyl Hydroxylation of Translocated Legionella pneumophila Effectors.
- Published in:
- Frontiers in Cellular & Infection Microbiology, 2017, v. 7, p. 1, doi. 10.3389/fcimb.2017.00054
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- Publication type:
- Article
2B4: A potential target in Staphylococcus aureus associated allergic inflammation.
- Published in:
- Clinical & Experimental Immunology, 2024, v. 215, n. 1, p. 37, doi. 10.1093/cei/uxad089
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- Publication type:
- Article
Who Binds Better? Let Alphafold2 Decide!
- Published in:
- Angewandte Chemie International Edition, 2023, v. 62, n. 28, p. 1, doi. 10.1002/anie.202303526
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- Publication type:
- Article
Cover Picture: A Versatile Synthetic Affinity Probe Reveals Inhibitory Synapse Ultrastructure and Brain Connectivity (Angew. Chem. Int. Ed. 30/2022).
- Published in:
- Angewandte Chemie International Edition, 2022, v. 61, n. 30, p. 1, doi. 10.1002/anie.202207941
- By:
- Publication type:
- Article
A Versatile Synthetic Affinity Probe Reveals Inhibitory Synapse Ultrastructure and Brain Connectivity**.
- Published in:
- Angewandte Chemie International Edition, 2022, v. 61, n. 30, p. 1, doi. 10.1002/anie.202202078
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- Publication type:
- Article
Relacin, a Novel Antibacterial Agent Targeting the Stringent Response.
- Published in:
- PLoS Pathogens, 2012, v. 8, n. 9, p. 1, doi. 10.1371/journal.ppat.1002925
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- Publication type:
- Article
Systemic structural analysis of alterations reveals a common structural basis of driver mutations in cancer.
- Published in:
- NAR Cancer, 2023, v. 5, n. 4, p. 1, doi. 10.1093/narcan/zcac040
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- Publication type:
- Article
Systemic structural analysis of alterations reveals a common structural basis of driver mutations in cancer.
- Published in:
- NAR Cancer, 2023, v. 5, n. 1, p. 1, doi. 10.1093/narcan/zcac040
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- Publication type:
- Article
Versatile communication strategies among tandem WW domain repeats.
- Published in:
- Experimental Biology & Medicine, 2015, v. 240, n. 3, p. 351, doi. 10.1177/1535370214566558
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- Publication type:
- Article
Targeting an Interaction Between Two Disordered Domains by Using a Designed Peptide.
- Published in:
- Chemistry - A European Journal, 2020, v. 26, n. 45, p. 10156, doi. 10.1002/chem.202002216
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- Publication type:
- Article
Front Cover: Targeting an Interaction Between Two Disordered Domains by Using a Designed Peptide (Chem. Eur. J. 45/2020).
- Published in:
- Chemistry - A European Journal, 2020, v. 26, n. 45, p. 10152, doi. 10.1002/chem.202002213
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- Publication type:
- Article