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Plant Metabolic Modeling: Achieving New Insight into Metabolism and Metabolic Engineering.
- Published in:
- Plant Cell, 2014, v. 26, n. 10, p. 3847, doi. 10.1105/tpc.114.130328
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- Publication type:
- Article
Combined Noninvasive Imaging and Modeling Approaches Reveal Metabolic Compartmentation in the Barley Endosperm.
- Published in:
- Plant Cell, 2011, v. 23, n. 8, p. 3041, doi. 10.1105/tpc.111.087015
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- Publication type:
- Article
Apomictic and Sexual Ovules of Boechera Display Heterochronic Global Gene Expression Patterns.
- Published in:
- Plant Cell, 2010, v. 22, n. 3, p. 655, doi. 10.1105/tpc.109.072223
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- Publication type:
- Article
Integrating Data from Biological Experiments into Metabolic Networks with the DBE Information System.
- Published in:
- In Silico Biology, 2005, v. 5, n. 2, p. 93
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- Publication type:
- Article
The System Architecture of the BioPath System.
- Published in:
- In Silico Biology, 2002, v. 2, n. 3, p. 415
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- Publication type:
- Article
High Quality Visualization of Biochemical Pathways in BioPath.
- Published in:
- In Silico Biology, 2002, v. 2, n. 2, p. 59
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- Publication type:
- Article
Visual analysis of transcriptome data in the context of anatomical structures and biological networks.
- Published in:
- Frontiers in Plant Science, 2012, v. 3, p. 1, doi. 10.3389/fpls.2012.00252
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- Publication type:
- Article
Visual analysis of transcriptome data in the context of anatomical structures and biological networks.
- Published in:
- Frontiers in Plant Science, 2012, v. 3, p. 1, doi. 10.3389/fpls.2012.00252
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- Publication type:
- Article
The Virtual-Spine Platform—Acquiring, visualizing, and analyzing individual sitting behavior.
- Published in:
- PLoS ONE, 2018, v. 13, n. 6, p. 1, doi. 10.1371/journal.pone.0195670
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- Publication type:
- Article
Translation of SBGN maps: Process Description to Activity Flow.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-115
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- Publication type:
- Article
VANTED v2: a framework for systems biology applications.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-139
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- Publication type:
- Article
Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE).
- Published in:
- 2018
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- Publication type:
- Correction Notice
Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE).
- Published in:
- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1285, doi. 10.4056/sigs.5279417
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- Publication type:
- Article
Systematic analysis, aggregation and visualisation of interaction fingerprints for molecular dynamics simulation data.
- Published in:
- Journal of Cheminformatics, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13321-024-00822-3
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- Publication type:
- Article
A unified framework for estimating parameters of kinetic biological models.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0500-9
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- Publication type:
- Article
Conversion of KEGG metabolic pathways to SBGN maps including automatic layout.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-250
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- Publication type:
- Article
HTPheno: An image analysis pipeline for high-throughput plant phenotyping.
- Published in:
- 2011
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- Publication type:
- Product Review
Fast multi-core based multimodal registration of 2D cross-sections and 3D datasets.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-20
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- Publication type:
- Article
Lessons from GNE-deficient embryonic stem cells: sialic acid biosynthesis is involved in proliferation and gene expression.
- Published in:
- Glycobiology, 2010, v. 20, n. 1, p. 107, doi. 10.1093/glycob/cwp153
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- Publication type:
- Article
Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
- Published in:
- 2020
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- Publication type:
- Correction Notice
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
- Published in:
- Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0477-8
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- Publication type:
- Article
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac212
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- Publication type:
- Article
Erratum: The Systems Biology Graphical Notation.
- Published in:
- 2009
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- Publication type:
- Correction notice
The Systems Biology Graphical Notation.
- Published in:
- Nature Biotechnology, 2009, v. 27, n. 8, p. 735, doi. 10.1038/nbt.1558
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- Publication type:
- Article
Erratum to Machine Learning Prediction of Cyanobacterial Toxin (Microcystin) Toxicodynamics in Humans.
- Published in:
- Altex, 2020, v. 37, n. 2, p. 337, doi. 10.14573/altex.1904031e
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- Publication type:
- Article
Machine Learning Prediction of Cyanobacterial Toxin (Microcystin) Toxicodynamics in Humans.
- Published in:
- Altex, 2020, v. 37, n. 1, p. 24, doi. 10.14573/altex.1904031s
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- Publication type:
- Article
Corrigendum to A High-Throughput Approach to Identify Specific Neurotoxicants / Developmental Toxicants in Human Neuronal Cell Function Assays.
- Published in:
- Altex, 2019, v. 36, n. 3, p. 505, doi. 10.14573/altex.1904111
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- Publication type:
- Article
A High-Throughput Approach to Identify Specific Neurotoxicants / Developmental Toxicants in Human Neuronal Cell Function Assays.
- Published in:
- Altex, 2018, v. 35, n. 2, p. 235, doi. 10.14573/altex.1712182
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- Publication type:
- Article
Modularization of biochemical networks based on classification of Petri net t-invariants.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-90
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- Publication type:
- Article
Meta-All: a system for managing metabolic pathway information.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. 465, doi. 10.1186/1471-2105-7-465
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- Publication type:
- Article
VANTED: A system for advanced data analysis and visualization in the context of biological networks.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. 109, doi. 10.1186/1471-2105-7-109
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- Publication type:
- Article
PathwayNexus: a tool for interactive metabolic data analysis.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae310
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- Publication type:
- Article
Coracle—a machine learning framework to identify bacteria associated with continuous variables.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad749
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- Publication type:
- Article
APL@voro—interactive visualization and analysis of cell membrane simulations.
- Published in:
- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad083
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- Publication type:
- Article
Visual exploration of large metabolic models.
- Published in:
- Bioinformatics, 2021, v. 37, n. 23, p. 4460, doi. 10.1093/bioinformatics/btab335
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- Publication type:
- Article
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024.
- Published in:
- 2024
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- Publication type:
- Editorial
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022.
- Published in:
- Journal of Integrative Bioinformatics, 2023, v. 20, n. 1, p. 1, doi. 10.1515/jib-2023-0004
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- Publication type:
- Article
Towards a hybrid user interface for the visual exploration of large biomolecular networks using virtual reality.
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- Journal of Integrative Bioinformatics, 2022, v. 19, n. 4, p. 1, doi. 10.1515/jib-2022-0034
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- Publication type:
- Article
Design considerations for representing systems biology information with the Systems Biology Graphical Notation.
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- Journal of Integrative Bioinformatics, 2022, v. 19, n. 2, p. 1, doi. 10.1515/jib-2022-0024
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- Publication type:
- Article
Specifications of standards in systems and synthetic biology: status and developments in 2021.
- Published in:
- 2021
- By:
- Publication type:
- Editorial
Specifications of standards in systems and synthetic biology: status and developments in 2020.
- Published in:
- Journal of Integrative Bioinformatics, 2020, v. 17, n. 2/3, p. 1, doi. 10.1515/jib-2020-0022
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- Publication type:
- Article
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).
- Published in:
- Journal of Integrative Bioinformatics, 2020, v. 17, n. 2/3, p. 1, doi. 10.1515/jib-2020-0005
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- Publication type:
- Article
JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools.
- Published in:
- Journal of Integrative Bioinformatics, 2019, v. 16, n. 4, p. 1, doi. 10.1515/jib-2019-0059
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- Publication type:
- Article
Mental-Map Preserving Visualisation of Partitioned Networks in Vanted.
- Published in:
- Journal of Integrative Bioinformatics, 2019, v. 16, n. 3, p. 1, doi. 10.1515/jib-2019-0026
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- Publication type:
- Article
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.
- Published in:
- Journal of Integrative Bioinformatics, 2019, v. 16, n. 2, p. 1, doi. 10.1515/jib-2019-0035
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- Publication type:
- Article
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
- Published in:
- Journal of Integrative Bioinformatics, 2019, v. 16, n. 2, p. 1, doi. 10.1515/jib-2019-0022
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- Publication type:
- Article
Controllability in Cancer Metabolic Networks According to Drug Targets as Driver Nodes.
- Published in:
- PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0079397
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- Publication type:
- Article
Centrality Analysis Methods for Biological Networks and Their Application to Gene Regulatory Networks.
- Published in:
- Gene Regulation & Systems Biology, 2008, n. 2, p. 193
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- Publication type:
- Article
MODA: An efficient algorithm for network motif discovery in biological networks.
- Published in:
- Genes & Genetic Systems, 2009, v. 84, n. 5, p. 385, doi. 10.1266/ggs.84.385
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- Publication type:
- Article
Genome-Scale Metabolic Modeling Reveals Metabolic Alterations of Multidrug-Resistant Acinetobacter baumannii in a Murine Bloodstream Infection Model.
- Published in:
- Microorganisms, 2020, v. 8, n. 11, p. 1793, doi. 10.3390/microorganisms8111793
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- Publication type:
- Article