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Epigenetic and transcriptional consequences in the endosperm of chemically induced transposon mobilization in Arabidopsis.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 15, p. 8833, doi. 10.1093/nar/gkae572
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- Article
Anno genominis XX: 20 years of Arabidopsis genomics.
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- Plant Cell, 2021, v. 33, n. 4, p. 832, doi. 10.1093/plcell/koaa038
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- Article
Mutagenesis of a Quintuple Mutant Impaired in Environmental Responses Reveals Roles for CHROMATIN REMODELING4 in the Arabidopsis Floral Transition[OPEN].
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- Plant Cell, 2020, v. 32, n. 5, p. 1479, doi. 10.1105/tpc.19.00992
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- Article
U1 snRNP Subunit LUC7 Modulates Plant Development and Stress Responses via Regulation of Alternative Splicing.
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- Plant Cell, 2018, v. 30, n. 11, p. 2838, doi. 10.1105/tpc.18.00244
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- Article
Complementary Activities of TELOMERE REPEAT BINDING Proteins and Polycomb Group Complexes in Transcriptional Regulation of Target Genes.
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- Plant Cell, 2016, v. 28, n. 1, p. 87, doi. 10.1105/tpc.15.00787
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- Article
Arabidopsis thaliana RNase H2 Deficiency Counteracts the Needs for the WEE1 Checkpoint Kinase but Triggers Genome Instability.
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- Plant Cell, 2014, v. 26, n. 9, p. 3680, doi. 10.1105/tpc.114.128108
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- Article
User guide for mapping-by-sequencing in Arabidopsis.
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- Genome Biology, 2013, v. 14, n. 6, p. 1, doi. 10.1186/gb-2013-14-6-r61
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- Article
The Evolutionary Dynamics of Genetic Incompatibilities Introduced by Duplicated Genes in Arabidopsis thaliana.
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- Molecular Biology & Evolution, 2021, v. 38, n. 4, p. 1225, doi. 10.1093/molbev/msaa306
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- Article
Using next-generation sequencing to isolate mutant genes from forward genetic screens.
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- Nature Reviews Genetics, 2014, v. 15, n. 10, p. 662, doi. 10.1038/nrg3745
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- Article
FLOWERING REPRESSOR AAA<sup>+</sup>ATPase 1 is a novel regulator of perennial flowering in Arabis alpina.
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- New Phytologist, 2022, v. 236, n. 2, p. 729, doi. 10.1111/nph.18374
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- Article
Natural variation identifies a Pxy gene controlling vascular organisation and formation of nodules and lateral roots in Lotus japonicus.
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- New Phytologist, 2021, v. 230, n. 6, p. 2459, doi. 10.1111/nph.17356
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- Article
A mis‐regulated cyclic nucleotide‐gated channel mediates cytosolic calcium elevation and activates immunity in Arabidopsis.
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- New Phytologist, 2021, v. 230, n. 3, p. 1078, doi. 10.1111/nph.17218
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- Article
Towards the discovery of novel genetic component involved in stress resistance in Arabidopsis thaliana.
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- New Phytologist, 2014, v. 201, n. 3, p. 810, doi. 10.1111/nph.12554
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- Article
Functional dissection of the PROPEP2 and PROPEP3 promoters reveals the importance of WRKY factors in mediating microbe-associated molecular pattern-induced expression.
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- New Phytologist, 2013, v. 198, n. 4, p. 1165, doi. 10.1111/nph.12233
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- Article
UVR2 ensures transgenerational genome stability under simulated natural UV-B in Arabidopsis thaliana.
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- Nature Communications, 2016, v. 7, n. 12, p. 13522, doi. 10.1038/ncomms13522
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- Article
A multi-marker association method for genome-wide association studies without the need for population structure correction.
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- Nature Communications, 2016, v. 7, n. 11, p. 13299, doi. 10.1038/ncomms13299
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- Article
CHOLINE TRANSPORTER-LIKE1 is required for sieve plate development to mediate long-distance cell-to-cell communication.
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- Nature Communications, 2014, v. 5, n. 7, p. 4276, doi. 10.1038/ncomms5276
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- Article
Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes.
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- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02235-5
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- Article
SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies.
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- Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1911-0
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- Article
Selective epigenetic control of retrotransposition in Arabidopsis.
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- Nature, 2009, v. 461, n. 7262, p. 427, doi. 10.1038/nature08328
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- Article
Rapid large-scale genomic introgression in Arabidopsis suecica via an autoallohexaploid bridge.
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- Genetics, 2023, v. 223, n. 2, p. 1, doi. 10.1093/genetics/iyac132
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- Article
Mapping-by-Sequencing Identifies HvPHYTOCHROME C as a Candidate Gene for the early maturity 5 Locus Modulating the Circadian Clock and Photoperiodic Flowering in Barley.
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- Genetics, 2014, v. 198, n. 1, p. 383, doi. 10.1534/genetics.114.165613
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- Article
Barley Ror1 encodes a class XI myosin required for mlo‐based broad‐spectrum resistance to the fungal powdery mildew pathogen.
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- Plant Journal, 2022, v. 112, n. 1, p. 84, doi. 10.1111/tpj.15930
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- Article
Mutations in the miR396 binding site of the growth‐regulating factor gene VvGRF4 modulate inflorescence architecture in grapevine.
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- Plant Journal, 2020, v. 101, n. 5, p. 1234, doi. 10.1111/tpj.14588
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- Article
Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana.
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- Plant Journal, 2017, v. 91, n. 2, p. 251, doi. 10.1111/tpj.13560
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- Article
Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana.
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- Plant Journal, 2016, v. 88, n. 2, p. 159, doi. 10.1111/tpj.13262
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- Article
Reliable genotyping of recombinant genomes using a robust hidden Markov model.
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- Plant Physiology, 2023, v. 192, n. 2, p. 821, doi. 10.1093/plphys/kiad191
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- Article
The genome of the stress-tolerant wild tomato species Solanum pennellii.
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- Nature Genetics, 2014, v. 46, n. 9, p. 1034, doi. 10.1038/ng.3046
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- Article
Whole-genome sequencing of multiple Arabidopsis thaliana populations.
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- Nature Genetics, 2011, v. 43, n. 10, p. 956, doi. 10.1038/ng.911
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- Article
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.
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- Nature Genetics, 2011, v. 43, n. 5, p. 476, doi. 10.1038/ng.807
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- Article
Kicking against the PRCs – A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
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- PLoS Genetics, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pgen.1005660
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- Article
Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage.
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- PLoS Genetics, 2015, v. 11, n. 1, p. 1, doi. 10.1371/journal.pgen.1004920
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- Article
Mutation identification by direct comparison of whole-genome sequencing data from mutant and wild-type individuals using k-mers.
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- Nature Biotechnology, 2013, v. 31, n. 4, p. 325, doi. 10.1038/nbt.2515
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- Article
Optimal spliced alignments of short sequence reads.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-O7
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- Article
plotsr: visualizing structural similarities and rearrangements between multiple genomes.
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- Bioinformatics, 2022, v. 38, n. 10, p. 2922, doi. 10.1093/bioinformatics/btac196
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- Article
The Striking Flower-in-Flower Phenotype of Arabidopsis thaliana Nossen (No-0) is Caused by a Novel LEAFY Allele.
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- Plants (2223-7747), 2019, v. 8, n. 12, p. 599, doi. 10.3390/plants8120599
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- Article
LOCAS - A Low Coverage Assembly Tool for Resequencing Projects.
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- PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0023455
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- Article
A SHIFT FROM MAGNITUDE TO SIGN EPISTASIS DURING ADAPTIVE EVOLUTION OF A BACTERIAL SOCIAL TRAIT.
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- Evolution, 2014, v. 68, n. 9, p. 2701, doi. 10.1111/evo.12467
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- Article
FITNESS OF ARABIDOPSIS THALIANA MUTATION ACCUMULATION LINES WHOSE SPONTANEOUS MUTATIONS ARE KNOWN.
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- Evolution, 2012, v. 66, n. 7, p. 2335, doi. 10.1111/j.1558-5646.2012.01583.x
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- Article
Genetic and Molecular Analysis of Root Hair Development in Arabis alpina.
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- Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.767772
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- Article
Strengths and potential pitfalls of hay transfer for ecological restoration revealed by RAD‐seq analysis in floodplain Arabis species.
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- Molecular Ecology, 2019, v. 28, n. 17, p. 3887, doi. 10.1111/mec.15194
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- Article
The megabase-scale crossover landscape is largely independent of sequence divergence.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31509-8
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- Article
The vast majority of somatic mutations in plants are layer-specific.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03337-0
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- Article
Technical Note on the quality of DNA sequencing for the molecular characterisation of genetically modified plants.
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- EFSA Journal, 2018, v. 16, n. 7, p. 1, doi. 10.2903/j.efsa.2018.5345
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- Article
Deep sequencing to reveal new variants in pooled DNA samples.
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- Human Mutation, 2009, v. 30, n. 12, p. 1703, doi. 10.1002/humu.21122
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- Article
findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies.
- Published in:
- Bioinformatics, 2018, v. 34, n. 4, p. 550, doi. 10.1093/bioinformatics/btx637
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- Article
Optimal spliced alignments of short sequence reads.
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- Bioinformatics, 2008, v. 24, n. 16, p. i174, doi. 10.1093/bioinformatics/btn300
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- Article
RBR: library-less repeat detection for ESTs.
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- Bioinformatics, 2006, v. 22, n. 18, p. 2232, doi. 10.1093/bioinformatics/btl368
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- Article
Masking repeats while clustering ESTs.
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- Nucleic Acids Research, 2005, v. 33, n. 7, p. 2176, doi. 10.1093/nar/gki511
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- Article
Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14779-y
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- Article