Found: 64
Select item for more details and to access through your institution.
CUDASW++4.0: ultra-fast GPU-based Smith–Waterman protein sequence database search.
- Published in:
- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05965-6
- By:
- Publication type:
- Article
Fully automated detection of primary sclerosing cholangitis (PSC)-compatible bile duct changes based on 3D magnetic resonance cholangiopancreatography using machine learning.
- Published in:
- European Radiology, 2021, v. 31, n. 4, p. 2482, doi. 10.1007/s00330-020-07323-5
- By:
- Publication type:
- Article
CLOVE: classification of genomic fusions into structural variation events.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1760-3
- By:
- Publication type:
- Article
Accelerating metagenomic read classification on CUDA-enabled GPUs.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1434-6
- By:
- Publication type:
- Article
rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1244-x
- By:
- Publication type:
- Article
Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clusters.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 11, doi. 10.1186/s12859-016-1128-0
- By:
- Publication type:
- Article
CellMiner HCC: a microarray-based expression database for hepatocellular carcinoma cell lines.
- Published in:
- Liver International, 2014, v. 34, n. 4, p. 621, doi. 10.1111/liv.12292
- By:
- Publication type:
- Article
MetaTransformer: deep metagenomic sequencing read classification using self-attention models.
- Published in:
- NAR Genomics & Bioinformatics, 2023, v. 5, n. 3, p. 1, doi. 10.1093/nargab/lqad082
- By:
- Publication type:
- Article
A computational method for studying the relation between alternative splicing and DNA methylation.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 2, p. 1, doi. 10.1093/nar/gkv906
- By:
- Publication type:
- Article
Parallel RNA secondary structure prediction using stochastic context-free grammars.
- Published in:
- Concurrency & Computation: Practice & Experience, 2005, v. 17, n. 14, p. 1669, doi. 10.1002/cpe.952
- By:
- Publication type:
- Article
Development of distributed bioinformatics applications with GMP.
- Published in:
- Concurrency & Computation: Practice & Experience, 2004, v. 16, n. 9, p. 945, doi. 10.1002/cpe.815
- By:
- Publication type:
- Article
Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model.
- Published in:
- International Journal of High Performance Computing Applications, 2015, v. 29, n. 4, p. 506, doi. 10.1177/1094342015585846
- By:
- Publication type:
- Article
CUDA-enabled hierarchical ward clustering of protein structures based on the nearest neighbour chain algorithm.
- Published in:
- International Journal of High Performance Computing Applications, 2016, v. 30, n. 2, p. 200, doi. 10.1177/1094342015597988
- By:
- Publication type:
- Article
RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures.
- Published in:
- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad695
- By:
- Publication type:
- Article
RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures.
- Published in:
- Bioinformatics, 2022, v. 38, n. 10, p. 2932, doi. 10.1093/bioinformatics/btac187
- By:
- Publication type:
- Article
CARE: context-aware sequencing read error correction.
- Published in:
- Bioinformatics, 2021, v. 37, n. 7, p. 889, doi. 10.1093/bioinformatics/btaa738
- By:
- Publication type:
- Article
RabbitMash: accelerating hash-based genome analysis on modern multi-core architectures.
- Published in:
- Bioinformatics, 2021, v. 37, n. 6, p. 873, doi. 10.1093/bioinformatics/btaa754
- By:
- Publication type:
- Article
RabbitQC: high-speed scalable quality control for sequencing data.
- Published in:
- Bioinformatics, 2021, v. 37, n. 4, p. 573, doi. 10.1093/bioinformatics/btaa719
- By:
- Publication type:
- Article
CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding.
- Published in:
- PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0086869
- By:
- Publication type:
- Article
CAREx: context-aware read extension of paired-end sequencing data.
- Published in:
- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05802-w
- By:
- Publication type:
- Article
Deep semantic lung segmentation for tracking potential pulmonary perfusion biomarkers in chronic obstructive pulmonary disease (COPD): The multi-ethnic study of atherosclerosis COPD study.
- Published in:
- 2020
- By:
- Publication type:
- journal article
Identification and quantification of meat product ingredients by whole-genome metagenomics (All-Food-Seq).
- Published in:
- European Food Research & Technology, 2020, v. 246, n. 1, p. 193, doi. 10.1007/s00217-019-03404-y
- By:
- Publication type:
- Article
SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations.
- Published in:
- BMC Systems Biology, 2016, v. 10, p. 215, doi. 10.1186/s12918-016-0300-5
- By:
- Publication type:
- Article
HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-131
- By:
- Publication type:
- Article
CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-117
- By:
- Publication type:
- Article
A hybrid short read mapping accelerator.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-67
- By:
- Publication type:
- Article
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. 1, p. 85, doi. 10.1186/1471-2105-12-85
- By:
- Publication type:
- Article
Comparative phyloinformatics of virus genes at micro and macro levels in a distributed computing environment.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S1-S23
- By:
- Publication type:
- Article
CBESW: Sequence Alignment on the Playstation 3.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-377
- By:
- Publication type:
- Article
Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 459, doi. 10.1186/1471-2105-8-459
- By:
- Publication type:
- Article
Graphical Workflow System for Modification Calling by Machine Learning of Reverse Transcription Signatures.
- Published in:
- Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00876
- By:
- Publication type:
- Article
Parallel mutual information estimation for inferring gene regulatory networks on GPUs.
- Published in:
- BMC Research Notes, 2011, v. 4, n. 1, p. 189, doi. 10.1186/1756-0500-4-189
- By:
- Publication type:
- Article
CUDASW++2.0: enhanced Smith-Watermanprotein database search on CUDA-enabled GPUsbased on SIMT and virtualized SIMD abstractions.
- Published in:
- BMC Research Notes, 2010, v. 3, p. 93, doi. 10.1186/1756-0500-3-93
- By:
- Publication type:
- Article
CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units.
- Published in:
- BMC Research Notes, 2009, v. 2, p. 1, doi. 10.1186/1756-0500-2-73
- By:
- Publication type:
- Article
Big Data in metagenomics: Apache Spark vs MPI.
- Published in:
- PLoS ONE, 2020, v. 15, n. 10, p. 1, doi. 10.1371/journal.pone.0239741
- By:
- Publication type:
- Article
RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads.
- Published in:
- BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03593-4
- By:
- Publication type:
- Article
A big data approach to metagenomics for all-food-sequencing.
- Published in:
- BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3429-6
- By:
- Publication type:
- Article
RabbitTClust: enabling fast clustering analysis of millions of bacteria genomes with MinHash sketches.
- Published in:
- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02961-6
- By:
- Publication type:
- Article
Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC++.
- Published in:
- PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0145490
- By:
- Publication type:
- Article
Mapping of option pricing algorithms onto heterogeneous many-core architectures.
- Published in:
- Journal of Supercomputing, 2017, v. 73, n. 9, p. 3715, doi. 10.1007/s11227-017-1968-z
- By:
- Publication type:
- Article
Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW.
- Published in:
- Bioinformatics, 2005, v. 21, n. 16, p. 3431, doi. 10.1093/bioinformatics/bti508
- By:
- Publication type:
- Article
Fast and efficient short read mapping based on a succinct hash index.
- Published in:
- BMC Bioinformatics, 2018, v. 19, p. 1, doi. 10.1186/s12859-018-2094-5
- By:
- Publication type:
- Article
GSWABE: faster GPU-accelerated sequence alignment with optimal alignment retrieval for short DNA sequences.
- Published in:
- Concurrency & Computation: Practice & Experience, 2015, v. 27, n. 4, p. 958, doi. 10.1002/cpe.3371
- By:
- Publication type:
- Article
Iterative sparse matrix-vector multiplication for accelerating the block Wiedemann algorithm over GF(2) on multi-graphics processing unit systems.
- Published in:
- Concurrency & Computation: Practice & Experience, 2013, p. 586, doi. 10.1002/cpe.2896
- By:
- Publication type:
- Article
Iterative sparse matrix-vector multiplication for accelerating the block Wiedemann algorithm over GF(2) on multi-graphics processing unit systems.
- Published in:
- Concurrency & Computation: Practice & Experience, 2013, v. 25, n. 4, p. 586, doi. 10.1002/cpe.2896
- By:
- Publication type:
- Article
All-Food-Seq (AFS): a quantifiable screen for species in biological samples by deep DNA sequencing.
- Published in:
- BMC Genomics, 2014, v. 15, n. 1, p. 639, doi. 10.1186/1471-2164-15-639
- By:
- Publication type:
- Article
Locality-sensitive hashing enables efficient and scalable signal classification in high-throughput mass spectrometry raw data.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04833-5
- By:
- Publication type:
- Article
CARE 2.0: reducing false-positive sequencing error corrections using machine learning.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04754-3
- By:
- Publication type:
- Article
kmcEx: memory-frugal and retrieval-efficient encoding of counted k-mers.
- Published in:
- Bioinformatics, 2019, v. 35, n. 23, p. 4871, doi. 10.1093/bioinformatics/btz299
- By:
- Publication type:
- Article
BGSA: a bit-parallel global sequence alignment toolkit for multi-core and many-core architectures.
- Published in:
- Bioinformatics, 2019, v. 35, n. 13, p. 2306, doi. 10.1093/bioinformatics/bty930
- By:
- Publication type:
- Article