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VeChat: correcting errors in long reads using variation graphs.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34381-8
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- Publication type:
- Article
Accurate and scalable variant calling from single cell DNA sequencing data with ProSolo.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26938-w
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- Publication type:
- Article
Determining Coding CpG Islands by Identifying Regions Significant for Pattern Statistics on Markov Chains.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2011, v. 10, n. 1, p. 1, doi. 10.2202/1544-6115.1677
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- Publication type:
- Article
Computing linkage disequilibrium aware genome embeddings using autoencoders.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae326
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- Publication type:
- Article
OGRE: Overlap Graph-based metagenomic Read clustEring.
- Published in:
- Bioinformatics, 2021, v. 37, n. 7, p. 905, doi. 10.1093/bioinformatics/btaa760
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- Publication type:
- Article
Strainline: full-length de novo viral haplotype reconstruction from noisy long reads.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-021-02587-6
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- Publication type:
- Article
phasebook: haplotype-aware de novo assembly of diploid genomes from long reads.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02512-x
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- Publication type:
- Article
Module Discovery by Exhaustive Search for Densely Connected, Co-Expressed Regions in Biomolecular Interaction Networks.
- Published in:
- PLoS ONE, 2010, v. 5, n. 10, p. 1, doi. 10.1371/journal.pone.0013348
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- Publication type:
- Article
Machine Learning-Based Ensemble Recursive Feature Selection of Circulating miRNAs for Cancer Tumor Classification.
- Published in:
- Cancers, 2020, v. 12, n. 7, p. 1785, doi. 10.3390/cancers12071785
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- Publication type:
- Article
Mapping proteins in the presence of paralogs using units of coevolution.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-14-S15-S18
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- Publication type:
- Article
Discovering motifs that induce sequencing errors.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. Suppl 5, p. 1, doi. 10.1186/1471-2105-14-S5-S1
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- Publication type:
- Article
Viral Quasispecies Assembly via Maximal Clique Enumeration.
- Published in:
- PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003515
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- Publication type:
- Article
MetMap Enables Genome-Scale Methyltyping for Determining Methylation States in Populations.
- Published in:
- PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000888
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- Publication type:
- Article
Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting.
- Published in:
- Viruses (1999-4915), 2018, v. 10, n. 5, p. 256, doi. 10.3390/v10050256
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- Publication type:
- Article
Hybrid-hybrid correction of errors in long reads with HERO.
- Published in:
- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03112-7
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- Publication type:
- Article
Strainline: full-length de novo viral haplotype reconstruction from noisy long reads.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-021-02587-6
- By:
- Publication type:
- Article
Recursive ensemble feature selection provides a robust mRNA expression signature for myalgic encephalomyelitis/chronic fatigue syndrome.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-83660-9
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- Publication type:
- Article
A fractional programming approach to efficient DNA melting temperature calculation.
- Published in:
- Bioinformatics, 2005, v. 21, n. 10, p. 2375, doi. 10.1093/bioinformatics/bti379
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- Publication type:
- Article
The Graphical Query Language: a tool for analysis of gene expression time-courses.
- Published in:
- Bioinformatics, 2005, v. 21, n. 10, p. 2544, doi. 10.1093/bioinformatics/bti311
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- Publication type:
- Article
Robust inference of groups in gene expression time-courses using mixtures of HMMs.
- Published in:
- Bioinformatics, 2004, v. 20, n. suppl_1, p. i283, doi. 10.1093/bioinformatics/bth937
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- Publication type:
- Article
Robust inference of groups in gene expression time-courses using mixtures of HMMs.
- Published in:
- Bioinformatics, 2004, v. 20, p. i283, doi. 10.1093/bioinformatics/bth937
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- Publication type:
- Article
Structural variant detection in cancer genomes: computational challenges and perspectives for precision oncology.
- Published in:
- NPJ Precision Oncology, 2021, v. 5, n. 1, p. 1, doi. 10.1038/s41698-021-00155-6
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- Publication type:
- Article
Enhancing Long-Read-Based Strain-Aware Metagenome Assembly.
- Published in:
- Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.868280
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- Publication type:
- Article
StrainXpress: strain aware metagenome assembly from short reads.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. 17, p. e101, doi. 10.1093/nar/gkac543
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- Publication type:
- Article
HyLight: Strain aware assembly of low coverage metagenomes.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52907-0
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- Publication type:
- Article
Varlociraptor: enhancing sensitivity and controlling false discovery rate in somatic indel discovery.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-01993-6
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- Publication type:
- Article
SV-AUTOPILOT: optimized, automated construction of structural variation discovery and benchmarking pipelines.
- Published in:
- 2015
- By:
- Publication type:
- Product Review
SV-AUTOPILOT: optimized, automated construction of structural variation discovery and benchmarking pipelines.
- Published in:
- BMC Genomics, 2015, v. 16, n. 1, p. 238, doi. 10.1186/s12864-015-1376-9
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- Publication type:
- Article
Full-length de novo viral quasispecies assembly through variation graph construction.
- Published in:
- Bioinformatics, 2019, v. 35, n. 24, p. 5086, doi. 10.1093/bioinformatics/btz443
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- Publication type:
- Article
Overlap graph-based generation of haplotigs for diploids and polyploids.
- Published in:
- Bioinformatics, 2019, v. 35, n. 21, p. 4281, doi. 10.1093/bioinformatics/btz255
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- Publication type:
- Article
Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype.
- Published in:
- Bioinformatics, 2019, v. 35, n. 14, p. i538, doi. 10.1093/bioinformatics/btz369
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- Publication type:
- Article
Genotyping inversions and tandem duplications.
- Published in:
- Bioinformatics, 2017, v. 33, n. 24, p. 4015, doi. 10.1093/bioinformatics/btx020
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- Publication type:
- Article
Repeat- and error-aware comparison of deletions.
- Published in:
- Bioinformatics, 2015, v. 31, n. 18, p. 2947, doi. 10.1093/bioinformatics/btv304
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- Publication type:
- Article
MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels.
- Published in:
- Bioinformatics, 2013, v. 29, n. 24, p. 3143, doi. 10.1093/bioinformatics/btt556
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- Publication type:
- Article
CLEVER: clique-enumerating variant finder.
- Published in:
- Bioinformatics, 2012, v. 28, n. 22, p. 2875, doi. 10.1093/bioinformatics/bts566
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- Publication type:
- Article
Mirroring co-evolving trees in the light of their topologies.
- Published in:
- Bioinformatics, 2012, v. 28, n. 9, p. 1202, doi. 10.1093/bioinformatics/bts109
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- Publication type:
- Article
Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions.
- Published in:
- Bioinformatics, 2011, v. 27, n. 7, p. 946, doi. 10.1093/bioinformatics/btr037
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- Publication type:
- Article
Inferring cancer subnetwork markers using density-constrained biclustering.
- Published in:
- Bioinformatics, 2010, v. 26, n. 18, p. i625, doi. 10.1093/bioinformatics/btq393
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- Publication type:
- Article