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Gene set differential analysis of time course expression profiles via sparse estimation in functional logistic model with application to time-dependent biomarker detection.
- Published in:
- 2016
- By:
- Publication type:
- journal article
Predicting Japanese Kampo formulas by analyzing database of medical records: a preliminary observational study.
- Published in:
- 2016
- By:
- Publication type:
- journal article
TP53 and RB1 alterations characterize poor prognostic subgroups in pediatric acute myeloid leukemia.
- Published in:
- Genes, Chromosomes & Cancer, 2023, v. 62, n. 7, p. 412, doi. 10.1002/gcc.23147
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- Publication type:
- Article
UBTF‐internal tandem duplication as a novel poor prognostic factor in pediatric acute myeloid leukemia.
- Published in:
- Genes, Chromosomes & Cancer, 2023, v. 62, n. 4, p. 202, doi. 10.1002/gcc.23110
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- Publication type:
- Article
Estimating gene regulatory networks and protein–protein interactions of Saccharomyces cerevisiae from multiple genome-wide data.
- Published in:
- Bioinformatics, 2005, v. 21, p. ii206, doi. 10.1093/bioinformatics/bti1133
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- Publication type:
- Article
Extensive feature detection of N-terminal protein sorting signals.
- Published in:
- Bioinformatics, 2002, v. 18, n. 2, p. 298, doi. 10.1093/bioinformatics/18.2.298
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- Publication type:
- Article
ProDDO: a database of disordered proteins from the Protein Data Bank (PDB).
- Published in:
- Bioinformatics, 2001, v. 17, n. 4, p. 379, doi. 10.1093/bioinformatics/17.4.379
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- Publication type:
- Article
Inferring qualitative relations in genetic networks and metabolic pathways.
- Published in:
- Bioinformatics, 2000, v. 16, n. 8, p. 727, doi. 10.1093/bioinformatics/16.8.727
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- Publication type:
- Article
On Determining Firing Delay Time of Transitions for Petri Net Based Signaling Pathways by Introducing Stochastic Decision Rules.
- Published in:
- In Silico Biology, 2010, v. 10, n. 1/2, p. 49, doi. 10.3233/ISB-2010-0417
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- Publication type:
- Article
Cell Illustrator 4.0: A Computational Platform for Systems Biology.
- Published in:
- In Silico Biology, 2010, v. 10, n. 1/2, p. 5, doi. 10.3233/ISB-2010-0415
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- Publication type:
- Article
Cell System Ontology: Representation for Modeling, Visualizing, and Simulating Biological Pathways.
- Published in:
- In Silico Biology, 2007, v. 7, n. 6, p. 623
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- Publication type:
- Article
Simulation-Based Validation of the p53 Transcriptional Activity with Hybrid Functional Petri Net.
- Published in:
- In Silico Biology, 2006, v. 6, n. 1/2, p. 1
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- Publication type:
- Article
Constructing Biological Pathway Models with Hybrid Functional Petri Nets.
- Published in:
- In Silico Biology, 2004, v. 4, n. 3, p. 271
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- Publication type:
- Article
Biopathways Representation and Simulation on Hybrid Functional Petri Net.
- Published in:
- In Silico Biology, 2003, v. 3, n. 3, p. 389
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- Publication type:
- Article
Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs.
- Published in:
- Scientific Reports, 2015, p. 13076, doi. 10.1038/srep13076
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- Publication type:
- Article
Clinical significance of prediabetes, undiagnosed diabetes and diagnosed diabetes on critical outcomes in COVID‐19: Integrative analysis from the Japan COVID‐19 task force.
- Published in:
- Diabetes, Obesity & Metabolism, 2023, v. 25, n. 1, p. 144, doi. 10.1111/dom.14857
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- Publication type:
- Article
Detection of APC mosaicism by next-generation sequencing in an FAP patient.
- Published in:
- Journal of Human Genetics, 2015, v. 60, n. 5, p. 227, doi. 10.1038/jhg.2015.14
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- Publication type:
- Article
Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks.
- Published in:
- BMC Systems Biology, 2015, v. 9, n. 1, p. 1, doi. 10.1186/s12918-015-0154-2
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- Publication type:
- Article
Functional clustering of time series gene expression data by Granger causality.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-137
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- Publication type:
- Article
Computational gene network analysis reveals TNF-induced angiogenesis.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-6-S2-S12
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- Publication type:
- Article
Time-dependent structural transformation analysis to high-level Petri net model with active state transition diagram.
- Published in:
- BMC Systems Biology, 2010, v. 4, p. 39, doi. 10.1186/1752-0509-4-39
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- Publication type:
- Article
Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension.
- Published in:
- BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-42
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- Publication type:
- Article
Recursive regularization for inferring gene networks from time-course gene expression profiles.
- Published in:
- BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-41
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- Publication type:
- Article
Systematic reconstruction of TRANSPATH data into Cell System Markup Language.
- Published in:
- BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-53
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- Publication type:
- Article
Inferring the global structure of chromosomes from structural variations.
- Published in:
- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S2-S13
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- Publication type:
- Article
Vasohibin-1 is identified as a master-regulator of endothelial cell apoptosis using gene network analysis.
- Published in:
- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-23
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- Publication type:
- Article
Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing.
- Published in:
- BMC Genomics, 2012, v. 13, n. Suppl 1, p. 1, doi. 10.1186/1471-2164-13-S1-S6
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- Publication type:
- Article
A microarray analysis of gnotobiotic mice indicating that microbial exposure during the neonatal period plays an essential role in immune system development.
- Published in:
- BMC Genomics, 2012, v. 13, n. 1, p. 335, doi. 10.1186/1471-2164-13-335
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- Publication type:
- Article
Hybrid Petri net based modeling for biological pathway simulation.
- Published in:
- Natural Computing, 2011, v. 10, n. 3, p. 1099, doi. 10.1007/s11047-009-9164-6
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- Publication type:
- Article
Association of a single-nucleotide polymorphism in the immunoglobulin µ-binding protein 2 gene with immunoglobulin A nephropathy.
- Published in:
- Journal of Human Genetics, 2005, v. 50, n. 1, p. 30, doi. 10.1007/s10038-004-0214-8
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- Publication type:
- Article
Association of single-nucleotide polymorphisms in the polymeric immunoglobulin receptor gene with immunoglobulin A nephropathy (IgAN) in Japanese patients.
- Published in:
- Journal of Human Genetics, 2003, v. 48, n. 6, p. 293, doi. 10.1007/s10038-003-0027-1
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- Publication type:
- Article
Comprehensive phosphoproteome analysis unravels the core signaling network that initiates the earliest synapse pathology in preclinical Alzheimer’s disease brain.
- Published in:
- Human Molecular Genetics, 2015, v. 24, n. 2, p. 540, doi. 10.1093/hmg/ddu475
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- Publication type:
- Article
Systems biology analysis of Drosophila in vivo screen data elucidates core networks for DNA damage repair in SCA1.
- Published in:
- Human Molecular Genetics, 2014, v. 23, n. 5, p. 1345, doi. 10.1093/hmg/ddt524
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- Publication type:
- Article
Targeting Tyro3 ameliorates a model of PGRNmutant FTLD-TDP via tau-mediated synaptic pathology.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-02821-z
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- Publication type:
- Article
Clonal evolution in myelodysplastic syndromes.
- Published in:
- Nature Communications, 2017, v. 8, n. 4, p. 15099, doi. 10.1038/ncomms15099
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- Publication type:
- Article
Aberrant splicing of U12-type introns is the hallmark of ZRSR2 mutant myelodysplastic syndrome.
- Published in:
- Nature Communications, 2015, v. 6, n. 1, p. 6042, doi. 10.1038/ncomms7042
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- Publication type:
- Article
Targeting BIG3-PHB2 interaction to overcome tamoxifen resistance in breast cancer cells.
- Published in:
- Nature Communications, 2013, v. 4, n. 9, p. 2443, doi. 10.1038/ncomms3443
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- Publication type:
- Article
Xprediction: Explainable EGFR-TKIs response prediction based on drug sensitivity specific gene networks.
- Published in:
- PLoS ONE, 2022, v. 17, n. 5, p. 1, doi. 10.1371/journal.pone.0261630
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- Publication type:
- Article
Differential Gene Regulatory Network Analysis between Azacitidine-Sensitive and -Resistant Cell Lines.
- Published in:
- International Journal of Molecular Sciences, 2024, v. 25, n. 6, p. 3302, doi. 10.3390/ijms25063302
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- Publication type:
- Article
Computational Tactics for Precision Cancer Network Biology.
- Published in:
- International Journal of Molecular Sciences, 2022, v. 23, n. 22, p. 14398, doi. 10.3390/ijms232214398
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- Publication type:
- Article
Exploring temporal transcription regulation structure of Aspergillusfumigatus in heat shock by state space model.
- Published in:
- BMC Genomics, 2009, v. 10, p. 306, doi. 10.1186/1471-2164-10-306
- By:
- Publication type:
- Article
A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-233
- By:
- Publication type:
- Article
ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2105-13-279
- By:
- Publication type:
- Article
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-12-S14-S7
- By:
- Publication type:
- Article
Ontology-based instance data validation for high-quality curated biological pathways.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S8
- By:
- Publication type:
- Article
An efficient biological pathway layout algorithmcombining grid-layout and spring embedder forcomplicated cellular location information.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 335, doi. 10.1186/1471-2105-11-335
- By:
- Publication type:
- Article
Enhancing breakpoint resolution with deep segmentation model: A general refinement method for read-depth based structural variant callers.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009186
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- Publication type:
- Article
Meta graphical lasso: uncovering hidden interactions among latent mechanisms.
- Published in:
- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-68959-7
- By:
- Publication type:
- Article
Sparse spectral graph analysis and its application to gastric cancer drug resistance-specific molecular interplays identification.
- Published in:
- PLoS ONE, 2024, v. 19, n. 7, p. 1, doi. 10.1371/journal.pone.0305386
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- Publication type:
- Article
Mutational landscape and clonal architecture in grade II and III gliomas.
- Published in:
- Nature Genetics, 2015, v. 47, n. 5, p. 458, doi. 10.1038/ng.3273
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- Publication type:
- Article