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DBP7 and YRF1-6 Are Involved in Cell Sensitivity to LiCl by Regulating the Translation of PGM2 mRNA.
Published in:
International Journal of Molecular Sciences, 2023, v. 24, n. 2, p. 1785, doi. 10.3390/ijms24021785
By:
- Jagadeesan, Sasi Kumar;
- Al-gafari, Mustafa;
- Wang, Jiashu;
- Takallou, Sarah;
- Allard, Danielle;
- Hajikarimlou, Maryam;
- Kazmirchuk, Thomas David Daniel;
- Moteshareie, Houman;
- Said, Kamaledin B.;
- Nokhbeh, Reza;
- Smith, Myron;
- Samanfar, Bahram;
- Golshani, Ashkan
Publication type:
Article
A Multi-Year, Multi-Cultivar Approach to Differential Expression Analysis of High- and Low-Protein Soybean (Glycine max).
Published in:
International Journal of Molecular Sciences, 2023, v. 24, n. 1, p. 222, doi. 10.3390/ijms24010222
By:
- Hooker, Julia C.;
- Nissan, Nour;
- Luckert, Doris;
- Charette, Martin;
- Zapata, Gerardo;
- Lefebvre, François;
- Mohr, Ramona M.;
- Daba, Ketema A.;
- Warkentin, Thomas D.;
- Hadinezhad, Mehri;
- Barlow, Brent;
- Hou, Anfu;
- Golshani, Ashkan;
- Cober, Elroy R.;
- Samanfar, Bahram
Publication type:
Article
Lithium Chloride Sensitivity in Yeast and Regulation of Translation.
Published in:
International Journal of Molecular Sciences, 2020, v. 21, n. 16, p. 5730, doi. 10.3390/ijms21165730
By:
- Hajikarimlou, Maryam;
- Hunt, Kathryn;
- Kirby, Grace;
- Takallou, Sarah;
- Jagadeesan, Sasi Kumar;
- Omidi, Katayoun;
- Hooshyar, Mohsen;
- Burnside, Daniel;
- Moteshareie, Houman;
- Babu, Mohan;
- Smith, Myron;
- Holcik, Martin;
- Samanfar, Bahram;
- Golshani, Ashkan
Publication type:
Article
computational approach to rapidly design peptides that detect SARS-CoV-2 surface protein S.
Published in:
NAR Genomics & Bioinformatics, 2022, v. 4, n. 3, p. 1, doi. 10.1093/nargab/lqac058
By:
- Hajikarimlou, Maryam;
- Hooshyar, Mohsen;
- Moutaoufik, Mohamed Taha;
- Aly, Khaled A;
- Azad, Taha;
- Takallou, Sarah;
- Jagadeesan, Sasi;
- Phanse, Sadhna;
- Said, Kamaledin B;
- Samanfar, Bahram;
- Bell, John C;
- Dehne, Frank;
- Babu, Mohan;
- Golshani, Ashkan
Publication type:
Article
Species-specific microRNA discovery and target prediction in the soybean cyst nematode.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-44469-w
By:
- Ajila, Victoria;
- Colley, Laura;
- Ste-Croix, Dave T.;
- Nissan, Nour;
- Cober, Elroy R.;
- Mimee, Benjamin;
- Samanfar, Bahram;
- Green, James R.
Publication type:
Article
P-TarPmiR accurately predicts plant-specific miRNA targets.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-022-27283-8
By:
- Ajila, Victoria;
- Colley, Laura;
- Ste-Croix, Dave T.;
- Nissan, Nour;
- Golshani, Ashkan;
- Cober, Elroy R.;
- Mimee, Benjamin;
- Samanfar, Bahram;
- Green, James R.
Publication type:
Article
Phosphatase Complex Pph3/Psy2 Is Involved in Regulation of Efficient Non-Homologous End-Joining Pathway in the Yeast <i>Saccharomyces cerevisiae</i>.
Published in:
PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0087248
By:
- Omidi, Katayoun;
- Hooshyar, Mohsen;
- Jessulat, Matthew;
- Samanfar, Bahram;
- Sanders, Megan;
- Burnside, Daniel;
- Pitre, Sylvain;
- Schoenrock, Andrew;
- Xu, Jianhua;
- Babu, Mohan;
- Golshani, Ashkan
Publication type:
Article
Efficient prediction of human protein-protein interactions at a global scale.
Published in:
2014
By:
- Schoenrock, Andrew;
- Samanfar, Bahram;
- Pitre, Sylvain;
- Hooshyar, Mohsen;
- Ke Jin;
- Phillips, Charles A.;
- Hui Wang;
- Phanse, Sadhna;
- Omidi, Katayoun;
- Yuan Gui;
- Alamgir, Md;
- Wong, Alex;
- Barrenäs, Fredrik;
- Babu, Mohan;
- Benson, Mikael;
- Langston, Michael A.;
- Green, James R.;
- Dehne, Frank;
- Golshani, Ashkan
Publication type:
Product Review
Oxidative stress‐induced YAP1 expression is regulated by NCE102, CDA2, and BCS1.
Published in:
FEBS Journal, 2024, v. 291, n. 20, p. 4602, doi. 10.1111/febs.17243
By:
- Takallou, Sarah;
- Hajikarimlou, Maryam;
- Al‐gafari, Mustafa;
- Wang, Jiashu;
- Jagadeesan, Sasi Kumar;
- Kazmirchuk, Thomas David Daniel;
- Arnoczki, Christina;
- Moteshareie, Houman;
- Said, Kamaledin B.;
- Azad, Taha;
- Holcik, Martin;
- Samanfar, Bahram;
- Smith, Myron;
- Golshani, Ashkan
Publication type:
Article
Lithium chloride sensitivity connects the activity of PEX11 and RIM20 to the translation of PGM2 and other mRNAs with structured 5'-UTRs.
Published in:
Molecular & Cellular Biochemistry, 2022, v. 477, n. 11, p. 2643, doi. 10.1007/s11010-022-04466-5
By:
- Jagadeesan, Sasi Kumar;
- Al-gafari, Mustafa;
- Hajikarimlou, Maryam;
- Takallou, Sarah;
- Moteshareie, Houman;
- Tayabali, Azam;
- Samanfar, Bahram;
- Smith, Myron;
- Golshani, Ashkan
Publication type:
Article
Can Epigenetics Guide the Production of Better Adapted Cultivars?
Published in:
Agronomy, 2022, v. 12, n. 4, p. N.PAG, doi. 10.3390/agronomy12040838
By:
- Turcotte, Haley;
- Hooker, Julia;
- Samanfar, Bahram;
- Parent, Jean-Sébastien
Publication type:
Article
Genetic Analysis of High Protein Content in 'AC Proteus' Related Soybean Populations Using SSR, SNP, DArT and DArTseq Markers.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-55862-9
By:
- Samanfar, Bahram;
- Cober, Elroy R.;
- Charette, Martin;
- Tan, Le Hoa;
- Bekele, Wubishet A.;
- Morrison, Malcolm J.;
- Kilian, Andrzej;
- Belzile, François;
- Molnar, Stephen J.
Publication type:
Article
Sensitivity of yeast to lithium chloride connects the activity of YTA6 and YPR096C to translation of structured mRNAs.
Published in:
PLoS ONE, 2020, v. 15, n. 7, p. 1, doi. 10.1371/journal.pone.0235033
By:
- Hajikarimlou, Maryam;
- Moteshareie, Houman;
- Omidi, Katayoun;
- Hooshyar, Mohsen;
- Shaikho, Sarah;
- Kazmirchuk, Tom;
- Burnside, Daniel;
- Takallou, Sarah;
- Zare, Narges;
- Jagadeesan, Sasi Kumar;
- Puchacz, Nathalie;
- Babu, Mohan;
- Smith, Myron;
- Holcik, Martin;
- Samanfar, Bahram;
- Golshani, Ashkan
Publication type:
Article
Identifying new variation at the J locus, previously identified as e6, in long juvenile 'Paranagoiana' soybean.
Published in:
Theoretical & Applied Genetics, 2021, v. 134, n. 4, p. 1007, doi. 10.1007/s00122-020-03746-2
By:
- Nissan, Nour;
- Cober, Elroy R.;
- Sadowski, Michael;
- Charette, Martin;
- Golshani, Ashkan;
- Samanfar, Bahram
Publication type:
Article
Mapping and identification of a potential candidate gene for a novel maturity locus, E10, in soybean.
Published in:
Theoretical & Applied Genetics, 2017, v. 130, n. 2, p. 377, doi. 10.1007/s00122-016-2819-7
By:
- Samanfar, Bahram;
- Molnar, Stephen;
- Charette, Martin;
- Schoenrock, Andrew;
- Dehne, Frank;
- Golshani, Ashkan;
- Belzile, François;
- Cober, Elroy
Publication type:
Article
Hydrogen peroxide sensitivity connects the activity of COX5A and NPR3 to the regulation of YAP1 expression.
Published in:
FASEB Journal, 2024, v. 38, n. 5, p. 1, doi. 10.1096/fj.202300978RR
By:
- Takallou, Sarah;
- Hajikarimlou, Maryam;
- Al-gafari, Mustafa;
- Wang, Jiashu;
- Jagadeesan, Sasi Kumar;
- Kazmirchuk, Thomas David Daniel;
- Moteshareie, Houman;
- Indrayanti, Alex Mulet;
- Azad, Taha;
- Holcik, Martin;
- Samanfar, Bahram;
- Smith, Myron;
- Golshani, Ashkan
Publication type:
Article
Differential gene expression provides leads to environmentally regulated soybean seed protein content.
Published in:
Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1260393
By:
- Hooker, Julia C.;
- Smith, Myron;
- Zapata, Gerardo;
- Charette, Martin;
- Luckert, Doris;
- Mohr, Ramona M.;
- Daba, Ketema A.;
- Warkentin, Thomas D.;
- Hadinezhad, Mehri;
- Barlow, Brent;
- Anfu Hou;
- Lefebvre, Franćois;
- Golshani, Ashkan;
- Cober, Elroy R.;
- Samanfar, Bahram
Publication type:
Article
Genome-wide analysis of cold imbibition stress in soybean, Glycine max.
Published in:
Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1221644
By:
- Haidar, Siwar;
- Lackey, Simon;
- Charette, Martin;
- Yoosefzadeh-Najafabadi, Mohsen;
- Gahagan, A. Claire;
- Hotte, Thomas;
- Belzile, Francois;
- Rajcan, Istvan;
- Golshani, Ashkan;
- Morrison, Malcolm J.;
- Cober, Elroy R.;
- Samanfar, Bahram
Publication type:
Article
The Involvement of YNR069C in Protein Synthesis in the Baker's Yeast, Saccharomyces cerevisiae.
Published in:
Biology (2079-7737), 2024, v. 13, n. 3, p. 138, doi. 10.3390/biology13030138
By:
- Takallou, Sarah;
- Hajikarimlou, Maryam;
- Al-gafari, Mustafa;
- Wang, Jiashu;
- Kazmirchuk, Thomas David Daniel;
- Said, Kamaledin B.;
- Samanfar, Bahram;
- Golshani, Ashkan
Publication type:
Article
A Broad Review of Soybean Research on the Ongoing Race to Overcome Soybean Cyst Nematode.
Published in:
Biology (2079-7737), 2022, v. 11, n. 2, p. 211, doi. 10.3390/biology11020211
By:
- Nissan, Nour;
- Mimee, Benjamin;
- Cober, Elroy R.;
- Golshani, Ashkan;
- Smith, Myron;
- Samanfar, Bahram
Publication type:
Article
The sensitivity of the yeast, Saccharomyces cerevisiae, to acetic acid is influenced by DOM34 and RPL36A.
Published in:
PeerJ, 2017, n. 11, p. 1, doi. 10.7717/peerj.4037
By:
- Samanfar, Bahram;
- Shostak, Kristina;
- Moteshareie, Houman;
- Hajikarimlou, Maryam;
- Shaikho, Sarah;
- Omidi, Katayoun;
- Hooshyar, Mohsen;
- Burnside, Daniel;
- Márquez, Imelda Galván;
- Kazmirchuk, Tom;
- Thet Naing;
- Ludovico, Paula;
- York-Lyon, Anna;
- Szereszewski, Kama;
- Leung, Cindy;
- Yixin Jin, Jennifer;
- Megarbane, Rami;
- Smith, Myron L.;
- Babu, Mohan;
- Holcik, Martin
Publication type:
Article
The conserved Tpk1 regulates non-homologous end joining double-strand break repair by phosphorylation of Nej1, a homolog of the human XLF.
Published in:
Nucleic Acids Research, 2021, v. 49, n. 14, p. 8145, doi. 10.1093/nar/gkab585
By:
- Jessulat, Matthew;
- Amin, Shahreen;
- Hooshyar, Mohsen;
- Malty, Ramy;
- Moutaoufik, Mohamed Taha;
- Zilocchi, Mara;
- Istace, Zoe;
- Phanse, Sadhna;
- Aoki, Hiroyuki;
- Omidi, Katayoun;
- Burnside, Daniel;
- Samanfar, Bahram;
- Aly, Khaled A;
- Golshani, Ashkan;
- Babu, Mohan
Publication type:
Article
Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in <i>Escherichia coli</i>.
Published in:
PLoS Genetics, 2014, v. 10, n. 2, p. 1, doi. 10.1371/journal.pgen.1004120
By:
- Babu, Mohan;
- Arnold, Roland;
- Bundalovic-Torma, Cedoljub;
- Gagarinova, Alla;
- Wong, Keith S.;
- Kumar, Ashwani;
- Stewart, Geordie;
- Samanfar, Bahram;
- Aoki, Hiroyuki;
- Wagih, Omar;
- Vlasblom, James;
- Phanse, Sadhna;
- Lad, Krunal;
- Yeou Hsiung Yu, Angela;
- Graham, Christopher;
- Jin, Ke;
- Brown, Eric;
- Golshani, Ashkan;
- Kim, Philip;
- Moreno-Hagelsieb, Gabriel
Publication type:
Article
A Correlation between 3′-UTR of OXA1 Gene and Yeast Mitochondrial Translation.
Published in:
Journal of Fungi, 2023, v. 9, n. 4, p. 445, doi. 10.3390/jof9040445
By:
- Hajikarimlou, Maryam;
- Hooshyar, Mohsen;
- Sunba, Noor;
- Nazemof, Nazila;
- Moutaoufik, Mohamed Taha;
- Phanse, Sadhena;
- Said, Kamaledin B.;
- Babu, Mohan;
- Holcik, Martin;
- Samanfar, Bahram;
- Smith, Myron;
- Golshani, Ashkan
Publication type:
Article
Harnessing Multi-Omics Strategies and Bioinformatics Innovations for Advancing Soybean Improvement: A Comprehensive Review.
Published in:
Plants (2223-7747), 2024, v. 13, n. 19, p. 2714, doi. 10.3390/plants13192714
By:
- Haidar, Siwar;
- Hooker, Julia;
- Lackey, Simon;
- Elian, Mohamad;
- Puchacz, Nathalie;
- Szczyglowski, Krzysztof;
- Marsolais, Frédéric;
- Golshani, Ashkan;
- Cober, Elroy R.;
- Samanfar, Bahram
Publication type:
Article
GmSWEET29 and Paralog GmSWEET34 Are Differentially Expressed between Soybeans Grown in Eastern and Western Canada.
Published in:
Plants (2223-7747), 2022, v. 11, n. 18, p. N.PAG, doi. 10.3390/plants11182337
By:
- Hooker, Julia C.;
- Nissan, Nour;
- Luckert, Doris;
- Zapata, Gerardo;
- Hou, Anfu;
- Mohr, Ramona M.;
- Glenn, Aaron J.;
- Barlow, Brent;
- Daba, Ketema A.;
- Warkentin, Thomas D.;
- Lefebvre, François;
- Golshani, Ashkan;
- Cober, Elroy R.;
- Samanfar, Bahram
Publication type:
Article
Novel QTL for Low Seed Cadmium Accumulation in Soybean.
Published in:
Plants (2223-7747), 2022, v. 11, n. 9, p. 1146, doi. 10.3390/plants11091146
By:
- Nissan, Nour;
- Hooker, Julia;
- Pattang, Arezo;
- Charette, Martin;
- Morrison, Malcolm;
- Yu, Kangfu;
- Hou, Anfu;
- Golshani, Ashkan;
- Molnar, Stephen J.;
- Cober, Elroy R.;
- Samanfar, Bahram
Publication type:
Article
Photoperiod Affects Node Appearance Rate and Flowering in Early Maturing Soybean.
Published in:
Plants (2223-7747), 2022, v. 11, n. 7, p. 871, doi. 10.3390/plants11070871
By:
- Ort, Nathaniel W. W.;
- Morrison, Malcolm J.;
- Cober, Elroy R.;
- Samanfar, Bahram;
- Lawley, Yvonne E.
Publication type:
Article
Peptides of a Feather: How Computation Is Taking Peptide Therapeutics under Its Wing.
Published in:
Genes, 2023, v. 14, n. 6, p. 1194, doi. 10.3390/genes14061194
By:
- Kazmirchuk, Thomas David Daniel;
- Bradbury-Jost, Calvin;
- Withey, Taylor Ann;
- Gessese, Tadesse;
- Azad, Taha;
- Samanfar, Bahram;
- Dehne, Frank;
- Golshani, Ashkan
Publication type:
Article
Heavy metal sensitivities of gene deletion strains for ITT1 and RPS1A connect their activities to the expression of URE2, a key gene involved in metal detoxification in yeast.
Published in:
PLoS ONE, 2018, v. 13, n. 9, p. 1, doi. 10.1371/journal.pone.0198704
By:
- Moteshareie, Houman;
- Hajikarimlou, Maryam;
- Mulet Indrayanti, Alex;
- Burnside, Daniel;
- Paula Dias, Ana;
- Lettl, Clara;
- Ahmed, Duale;
- Omidi, Katayoun;
- Kazmirchuk, Tom;
- Puchacz, Nathalie;
- Zare, Narges;
- Takallou, Sarah;
- Naing, Thet;
- Hernández, Raúl Bonne;
- Willmore, William G.;
- Babu, Mohan;
- McKay, Bruce;
- Samanfar, Bahram;
- Holcik, Martin;
- Golshani, Ashkan
Publication type:
Article
Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli.
Published in:
Bioinformatics, 2015, v. 31, n. 3, p. 306, doi. 10.1093/bioinformatics/btu671
By:
- Vlasblom, James;
- Zuberi, Khalid;
- Rodriguez, Harold;
- Arnold, Roland;
- Gagarinova, Alla;
- Deineko, Viktor;
- Kumar, Ashwani;
- Leung, Elisa;
- Rizzolo, Kamran;
- Samanfar, Bahram;
- Chang, Luke;
- Phanse, Sadhna;
- Golshani, Ashkan;
- Greenblatt, Jack F.;
- Houry, Walid A.;
- Emili, Andrew;
- Morris, Quaid;
- Bader, Gary;
- Babu, Mohan
Publication type:
Article
Zinc oxide and silver nanoparticles toxicity in the baker's yeast, Saccharomyces cerevisiae.
Published in:
PLoS ONE, 2018, v. 13, n. 3, p. 1, doi. 10.1371/journal.pone.0193111
By:
- Galván Márquez, Imelda;
- Ghiyasvand, Mergan;
- Massarsky, Andrey;
- Babu, Mohan;
- Samanfar, Bahram;
- Omidi, Katayoun;
- Moon, Thomas W.;
- Smith, Myron L.;
- Golshani, Ashkan
Publication type:
Article

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