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Powassan Virus Neuropathology and Genomic Diversity in Patients With Fatal Encephalitis.
Published in:
Open Forum Infectious Diseases, 2020, v. 7, n. 10, p. 1, doi. 10.1093/ofid/ofaa392
By:
- Normandin, Erica;
- Solomon, Isaac H;
- Zamirpour, Siavash;
- Lemieux, Jacob;
- Freije, Catherine A;
- Mukerji, Shibani S;
- Tomkins-Tinch, Christopher;
- Park, Daniel;
- Sabeti, Pardis C;
- Piantadosi, Anne
Publication type:
Article
Metagenomic Sequencing of an Echovirus 30 Genome From Cerebrospinal Fluid of a Patient With Aseptic Meningitis and Orchitis.
Published in:
2017
By:
- Piantadosi, Anne;
- Mukerji, Shibani S.;
- Chitneni, Pooja;
- Cho, Tracey A.;
- Cosimi, Lisa A.;
- Hung, Deborah T.;
- Goldberg, Marcia B.;
- Sabeti, Pardis C.;
- Kuritzkes, Daniel R.;
- Grad, Yonatan H.
Publication type:
Case Study
The case for altruism in institutional diagnostic testing.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-021-02605-4
By:
- Specht, Ivan;
- Sani, Kian;
- Botti-Lodovico, Yolanda;
- Hughes, Michael;
- Heumann, Kristin;
- Bronson, Amy;
- Marshall, John;
- Baron, Emily;
- Parrie, Eric;
- Glennon, Olivia;
- Fry, Ben;
- Colubri, Andrés;
- Sabeti, Pardis C.
Publication type:
Article
Fatal Case of Chronic Jamestown Canyon Virus Encephalitis Diagnosed by Metagenomic Sequencing in Patient Receiving Rituximab.
Published in:
2021
By:
- Solomon, Isaac H.;
- Ganesh, Vijay S.;
- Guixia Yu;
- Xian Ding Deng;
- Wilson, Michael R.;
- Miller, Steve;
- Milligan, Tracey A.;
- Mukerji, Shibani S.;
- Mathewson, Abigail;
- Linxweiler, Justin;
- Morse, Darlene;
- Ritter, Jana M.;
- Staples, J. Erin;
- Hughes, Holly;
- Gould, Carolyn V.;
- Sabeti, Pardis C.;
- Chiu, Charles Y.;
- Piantadosi, Anne;
- Yu, Guixia;
- Deng, Xian Ding
Publication type:
journal article
Monitoring of Ebola Virus Makona Evolution through Establishment of Advanced Genomic Capability in Liberia.
Published in:
Emerging Infectious Diseases, 2015, v. 21, n. 7, p. 1135, doi. 10.3201/eid2107.150522
By:
- Kugelman, Jeffrey R.;
- Wiley, Michael R.;
- Mate, Suzanne;
- Ladner, Jason T.;
- Beitzel, Brett;
- Fakoli, Lawrence;
- Taweh, Fahn;
- Prieto, Karla;
- Diclaro, Joseph W.;
- Minogue, Timothy;
- Schoepp, Randal J.;
- Schaecher, Kurt E.;
- Pettitt, James;
- Bateman, Stacey;
- Fair, Joseph;
- Kuhn, Jens H.;
- Hensley, Lisa;
- Park, Daniel J.;
- Sabeti, Pardis C.;
- Sanchez-Lockhart, Mariano
Publication type:
Article
Phylodynamics of deer tick virus in North America.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead008
By:
- McMinn, Rebekah J;
- Langsjoen, Rose M;
- Bombin, Andrei;
- Robich, Rebecca M;
- Ojeda, Erick;
- Normandin, Erica;
- Goethert, Heidi K;
- Lubelczyk, Charles B;
- Schneider, Elizabeth;
- Cosenza, Danielle;
- Meagher, Molly;
- Prusinski, Melissa A;
- Sabeti, Pardis C;
- Smith, Robert P;
- Telford III, Sam R;
- Piantadosi, Anne;
- Ebel, Gregory D
Publication type:
Article
Development of a Single Nucleotide Polymorphism Barcode to Genotype Plasmodium vivax Infections.
Published in:
PLoS Neglected Tropical Diseases, 2015, v. 9, n. 3, p. 1, doi. 10.1371/journal.pntd.0003539
By:
- Baniecki, Mary Lynn;
- Faust, Aubrey L.;
- Schaffner, Stephen F.;
- Park, Daniel J.;
- Galinsky, Kevin;
- Daniels, Rachel F.;
- Hamilton, Elizabeth;
- Ferreira, Marcelo U.;
- Karunaweera, Nadira D.;
- Serre, David;
- Zimmerman, Peter A.;
- Sá, Juliana M.;
- Wellems, Thomas E.;
- Musset, Lise;
- Legrand, Eric;
- Melnikov, Alexandre;
- Neafsey, Daniel E.;
- Volkman, Sarah K.;
- Wirth, Dyann F.;
- Sabeti, Pardis C.
Publication type:
Article
Development of a Single Nucleotide Polymorphism Barcode to Genotype Plasmodium vivax Infections.
Published in:
PLoS Neglected Tropical Diseases, 2015, v. 9, n. 3, p. 1, doi. 10.1371/journal.pntd.0003539
By:
- Baniecki, Mary Lynn;
- Faust, Aubrey L.;
- Schaffner, Stephen F.;
- Park, Daniel J.;
- Galinsky, Kevin;
- Daniels, Rachel F.;
- Hamilton, Elizabeth;
- Ferreira, Marcelo U.;
- Karunaweera, Nadira D.;
- Serre, David;
- Zimmerman, Peter A.;
- Sá, Juliana M.;
- Wellems, Thomas E.;
- Musset, Lise;
- Legrand, Eric;
- Melnikov, Alexandre;
- Neafsey, Daniel E.;
- Volkman, Sarah K.;
- Wirth, Dyann F.;
- Sabeti, Pardis C.
Publication type:
Article
Designing sensitive viral diagnostics with machine learning.
Published in:
Nature Biotechnology, 2022, v. 40, n. 7, p. 1123, doi. 10.1038/s41587-022-01213-5
By:
- Metsky, Hayden C.;
- Welch, Nicole L.;
- Pillai, Priya P.;
- Haradhvala, Nicholas J.;
- Rumker, Laurie;
- Mantena, Sreekar;
- Zhang, Yibin B.;
- Yang, David K.;
- Ackerman, Cheri M.;
- Weller, Juliane;
- Blainey, Paul C.;
- Myhrvold, Cameron;
- Mitzenmacher, Michael;
- Sabeti, Pardis C.
Publication type:
Article
A genome-wide map of diversity in Plasmodium falciparum.
Published in:
Nature Genetics, 2007, v. 39, n. 1, p. 113, doi. 10.1038/ng1930
By:
- Volkman, Sarah K.;
- Sabeti, Pardis C.;
- DeCaprio, David;
- Neafsey, Daniel E.;
- Schaffner, Stephen F.;
- Milner Jr., Danny A.;
- Daily, Johanna P.;
- Sarr, Ousmane;
- Ndiaye, Daouda;
- Ndir, Omar;
- Mboup, Soulyemane;
- Duraisingh, Manoj T.;
- Lukens, Amanda;
- Derr, Alan;
- Stange-Thomann, Nicole;
- Waggoner, Skye;
- Onofrio, Robert;
- Ziaugra, Liuda;
- Mauceli, Evan;
- Gnerre, Sante
Publication type:
Article
A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC.
Published in:
2006
By:
- de Bakker, Paul I. W.;
- McVean, Gil;
- Sabeti, Pardis C.;
- Miretti, Marcos M.;
- Green, Todd;
- Marchini, Jonathan;
- Ke, Xiayi;
- Monsuur, Alienke J.;
- Whittaker, Pamela;
- Delgado, Marcos;
- Morrison, Jonathan;
- Richardson, Angela;
- Walsh, Emily C.;
- Gao, Xiaojiang;
- Galver, Luana;
- Hart, John;
- Hafler, David A.;
- Pericak-Vance, Margaret;
- Todd, John A.;
- Daly, Mark J.
Publication type:
Letter
Common deletion polymorphisms in the human genome.
Published in:
Nature Genetics, 2006, v. 38, n. 1, p. 86, doi. 10.1038/ng1696
By:
- McCarroll, Steven A.;
- Hadnott, Tracy N.;
- Perry, George H.;
- Sabeti, Pardis C.;
- Zody, Michael C.;
- Barrett, Jeffrey C.;
- Dallaire, Stephanie;
- Gabriel, Stacey B.;
- Lee, Charles;
- Daly, Mark J.;
- Altshuler, David M.
Publication type:
Article
Prevalence of Lassa Virus Disease (LVD) in Nigerian children with fever or fever and convulsions in an endemic area.
Published in:
PLoS Neglected Tropical Diseases, 2017, v. 11, n. 7, p. 1, doi. 10.1371/journal.pntd.0005711
By:
- Akhuemokhan, Odigie C.;
- Ewah-Odiase, Rosemary O.;
- Akpede, Nosa;
- Ehimuan, Jacqueline;
- Adomeh, Donatus I.;
- Odia, Ikpomwonsa;
- Olomu, Sylvia C.;
- Pahlmann, Meike;
- Becker-Ziaja, Beate;
- Happi, Christian T.;
- Asogun, Danny A.;
- Okogbenin, Sylvanus A.;
- Okokhere, Peter O.;
- Dawodu, Osagie S.;
- Omoike, Irekpono U.;
- Sabeti, Pardis C.;
- Günther, Stephan;
- Akpede, George O.
Publication type:
Article
Genetic Surveillance Detects Both Clonal and Epidemic Transmission of Malaria following Enhanced Intervention in Senegal.
Published in:
PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0060780
By:
- Daniels, Rachel;
- Chang, Hsiao-Han;
- Séne, Papa Diogoye;
- Park, Danny C.;
- Neafsey, Daniel E.;
- Schaffner, Stephen F.;
- Hamilton, Elizabeth J.;
- Lukens, Amanda K.;
- Van Tyne, Daria;
- Mboup, Souleymane;
- Sabeti, Pardis C.;
- Ndiaye, Daouda;
- Wirth, Dyann F.;
- Hartl, Daniel L.;
- Volkman, Sarah K.
Publication type:
Article
Polymorphisms in the Gene That Encodes the Iron Transport Protein Ferroportin 1 Influence Susceptibility to Tuberculosis.
Published in:
Journal of Infectious Diseases, 2012, v. 205, n. 7, p. 1043, doi. 10.1093/infdis/jis026
By:
- Baker, Meghan A.;
- Wilson, Douglas;
- Wallengren, Kristina;
- Sandgren, Andreas;
- Iartchouk, Oleg;
- Broodie, Nisha;
- Goonesekera, Sunali D.;
- Sabeti, Pardis C.;
- Murray, Megan B.
Publication type:
Article
In vivo Ebola virus infection leads to a strong innate response in circulating immune cells.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3060-0
By:
- Caballero, Ignacio S.;
- Honko, Anna N.;
- Gire, Stephen K.;
- Winnicki, Sarah M.;
- Melé, Marta;
- Gerhardinger, Chiara;
- Lin, Aaron E.;
- Rinn, John L.;
- Sabeti, Pardis C.;
- Hensley, Lisa E.;
- Connor, John H.
Publication type:
Article
Natural selection and infectious disease in human populations.
Published in:
Nature Reviews Genetics, 2014, v. 15, n. 6, p. 379, doi. 10.1038/nrg3734
By:
- Karlsson, Elinor K.;
- Kwiatkowski, Dominic P.;
- Sabeti, Pardis C.
Publication type:
Article
SARS-CoV-2 Reinfection in a Liver Transplant Recipient.
Published in:
2021
By:
- Tomkins-Tinch, Christopher H.;
- Daly, Jennifer S.;
- Gladden-Young, Adrianne;
- Theodoropoulos, Nicole M.;
- Madaio, Michael P.;
- Yu, Neng;
- Vanguri, Vijay K.;
- Siddle, Katherine J.;
- Adams, Gordon;
- Krasilnikova, Lydia A.;
- Movahedi, Babak;
- Bozorgzadeh, Adel;
- Simin, Karl;
- Lemieux, Jacob E.;
- Luban, Jeremy;
- Park, Daniel J.;
- MacInnis, Bronwyn L.;
- Sabeti, Pardis C.;
- Levitz, Stuart M.
Publication type:
Letter
Detection of Neanderthal Adaptively Introgressed Genetic Variants That Modulate Reporter Gene Expression in Human Immune Cells.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 1, p. 1, doi. 10.1093/molbev/msab304
By:
- Jagoda, Evelyn;
- Xue, James R;
- Reilly, Steven K;
- Dannemann, Michael;
- Racimo, Fernando;
- Huerta-Sanchez, Emilia;
- Sankararaman, Sriram;
- Kelso, Janet;
- Pagani, Luca;
- Sabeti, Pardis C;
- Capellini, Terence D
Publication type:
Article
Genomic Sequencing of Plasmodium falciparum Malaria Parasites from Senegal Reveals the Demographic History of the Population.
Published in:
Molecular Biology & Evolution, 2012, v. 29, n. 11, p. 3427, doi. 10.1093/molbev/mss161
By:
- Chang, Hsiao-Han;
- Park, Daniel J.;
- Galinsky, Kevin J.;
- Schaffner, Stephen F.;
- Ndiaye, Daouda;
- Ndir, Omar;
- Mboup, Souleymane;
- Wiegand, Roger C.;
- Volkman, Sarah K.;
- Sabeti, Pardis C.;
- Wirth, Dyann F.;
- Neafsey, Daniel E.;
- Hartl, Daniel L.
Publication type:
Article
Genome-wide detection and characterization of positive selection in human populations.
Published in:
Nature, 2007, v. 449, n. 7164, p. 913, doi. 10.1038/nature06250
By:
- Sabeti, Pardis C.;
- Varilly, Patrick;
- Fry, Ben;
- Lohmueller, Jason;
- Hostetter, Elizabeth;
- Cotsapas, Chris;
- Xiaohui Xie;
- Byrne, Elizabeth H.;
- McCarroll, Steven A.;
- Gaudet, Rachelle;
- Schaffner, Stephen F.;
- Lander, Eric S.
Publication type:
Article
Real-time Metagenomic Analysis of Undiagnosed Fever Cases Unveils a Yellow Fever Outbreak in Edo State, Nigeria.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-59880-w
By:
- Ajogbasile, Fehintola V.;
- Oguzie, Judith U.;
- Oluniyi, Paul E.;
- Eromon, Philomena E.;
- Uwanibe, Jessica N.;
- Mehta, Samar B.;
- Siddle, Katherine J.;
- Odia, Ikponmwosa;
- Winnicki, Sarah M.;
- Akpede, Nosa;
- Akpede, George;
- Okogbenin, Sylvanus;
- Ogbaini-Emovon, Ephraim;
- MacInnis, Bronwyn L.;
- Folarin, Onikepe A.;
- Modjarrad, Kayvon;
- Schaffner, Stephen F.;
- Tomori, Oyewale;
- Ihekweazu, Chikwe;
- Sabeti, Pardis C.
Publication type:
Article
Development of a SNP barcode to genotype Babesia microti infections.
Published in:
PLoS Neglected Tropical Diseases, 2019, v. 13, n. 3, p. 1, doi. 10.1371/journal.pntd.0007194
By:
- Baniecki, Mary Lynn;
- Moon, Jade;
- Sani, Kian;
- Lemieux, Jacob E.;
- Schaffner, Stephen F.;
- Sabeti, Pardis C.
Publication type:
Article
Three linked variants have opposing regulatory effects on isovaleryl-CoA dehydrogenase gene expression.
Published in:
Human Molecular Genetics, 2024, v. 33, n. 3, p. 270, doi. 10.1093/hmg/ddad177
By:
- Brown, Elizabeth A;
- Kales, Susan;
- Boyle, Michael James;
- Vitti, Joseph;
- Kotliar, Dylan;
- Schaffner, Steve;
- Tewhey, Ryan;
- Sabeti, Pardis C
Publication type:
Article
Reporter Assays for Ebola Virus Nucleoprotein Oligomerization, Virion-Like Particle Budding, and Minigenome Activity Reveal the Importance of Nucleoprotein Amino Acid Position 111.
Published in:
Viruses (1999-4915), 2020, v. 12, n. 1, p. 105, doi. 10.3390/v12010105
By:
- Lin, Aaron E.;
- Diehl, William E.;
- Cai, Yingyun;
- Finch, Courtney L.;
- Akusobi, Chidiebere;
- Kirchdoerfer, Robert N.;
- Bollinger, Laura;
- Schaffner, Stephen F.;
- Brown, Elizabeth A.;
- Saphire, Erica Ollmann;
- Andersen, Kristian G.;
- Kuhn, Jens H.;
- Luban, Jeremy;
- Sabeti, Pardis C.
Publication type:
Article
FRESCo: finding regions of excess synonymous constraint in diverse viruses.
Published in:
Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0603-7
By:
- Sealfon, Rachel S.;
- Lin, Michael F.;
- Jungreis, Irwin;
- Wolf, Maxim Y.;
- Kellis, Manolis;
- Sabeti, Pardis C.
Publication type:
Article
A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs.
Published in:
Genome Biology, 2011, v. 12, n. 6, p. 1, doi. 10.1186/gb-2011-12-6-r56
By:
- Broadbent, Kate M.;
- Park, Daniel;
- Wolf, Ashley R.;
- Van Tyne, Daria;
- Sims, Jennifer S.;
- Ribacke, Ulf;
- Volkman, Sarah;
- Duraisingh, Manoj;
- Wirth, Dyann;
- Sabeti, Pardis C.;
- Rinn, John L.
Publication type:
Article
Evidence of Ebola Virus Replication and High Concentration in Semen of a Patient During Recovery.
Published in:
Clinical Infectious Diseases, 2017, v. 65, n. 8, p. 1400, doi. 10.1093/cid/cix518
By:
- Barnes, Kayla G.;
- Kindrachuk, Jason;
- Lin, Aaron E.;
- Wohl, Shirlee;
- Qu, James;
- Tostenson, Samantha D.;
- Dorman, William R.;
- Busby, Michele;
- Siddle, Katherine J.;
- Luo, Cynthia Y.;
- Matranga, Christian B.;
- Davey, Richard T.;
- Sabeti, Pardis C.;
- Chertow, Daniel S.
Publication type:
Article
Detecting recent positive selection in the human genome from haplotype structure.
Published in:
Nature, 2002, v. 419, n. 6909, p. 832, doi. 10.1038/nature01140
By:
- Sabeti, Pardis C.;
- Reich, David E.;
- Higgins, John M.;
- Levine, Haninah Z. P.;
- Richter, Daniel J.;
- Schaffner, Stephen F.;
- Gabriel, Stacey B.;
- Platko, Jill V.;
- Patterson, Nick J.;
- McDonald, Gavin J.;
- Ackerman, Hans C.;
- Campbell, Sarah J.;
- Altshuler, David;
- Cooper, Richard;
- Kwiatkowski, Dominic;
- Ward, Ryk;
- Lander, Eric S.
Publication type:
Article
Linkage disequilibrium in the human genome.
Published in:
Nature, 2001, v. 411, n. 6834, p. 199, doi. 10.1038/35075590
By:
- Reich, David E.;
- Cargill, Michele;
- Bolk, Stacey;
- Ireland, James;
- Sabeti, Pardis C.;
- Richter, Daniel J.;
- Lavery, Thomas;
- Kouyoumjlan, Rose;
- Farhadian, Shelli F.;
- Ward, Ryk;
- Lander, Eric S.
Publication type:
Article
Genomic investigation of a dengue virus outbreak in Thiès, Senegal, in 2018.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-89070-1
By:
- Gaye, Amy;
- Ndiaye, Tolla;
- Sy, Mouhamad;
- Deme, Awa B.;
- Thiaw, Alphonse B.;
- Sene, Aita;
- Ndiaye, Cheikh;
- Diedhiou, Younouss;
- Mbaye, Amadou M.;
- Ndiaye, Ibrahima;
- Tomkins-Tinch, Christopher;
- Gomis, Jules F.;
- Badiane, Aida S.;
- MacInnis, Bronwyn;
- Park, Daniel J.;
- Ndiaye, Mouhamadou;
- Sy, Ngayo;
- Sabeti, Pardis C.;
- Siddle, Katherine J.;
- Ndiaye, Daouda
Publication type:
Article
Natural Selection in a Bangladeshi Population from the Cholera-Endemic Ganges River Delta.
Published in:
Science Translational Medicine, 2013, v. 5, n. 192, p. 1, doi. 10.1126/scitranslmed.3006338
By:
- Karlsson, Elinor K.;
- Harris, Jason B.;
- Tabrizi, Shervin;
- Rahman, Atiqur;
- Shlyakhter, Ilya;
- Patterson, Nick;
- O'Dushlaine, Colm;
- Schaffner, Stephen F.;
- Gupta, Sameer;
- Chowdhury, Fahima;
- Sheikh, Alaullah;
- Ok Sarah Shin;
- Ellis, Crystal;
- Becker, Christine E.;
- Stuart, Lynda M.;
- Calderwood, Stephen B.;
- Ryan, Edward T.;
- Qadri, Firdausi;
- Sabeti, Pardis C.;
- LaRocque, Regina C.
Publication type:
Article
Increased Pediatric Respiratory Syncytial Virus Case Counts Following the Emergence of SARS-CoV-2 Can Be Attributed to Changes in Testing.
Published in:
Clinical Infectious Diseases, 2024, v. 78, n. 6, p. 1707, doi. 10.1093/cid/ciae140
By:
- Petros, Brittany A;
- Milliren, Carly E;
- Sabeti, Pardis C;
- Ozonoff, Al
Publication type:
Article
Distinguishing Severe Acute Respiratory Syndrome Coronavirus 2 Persistence and Reinfection: A Retrospective Cohort Study.
Published in:
Clinical Infectious Diseases, 2023, v. 76, n. 5, p. 850, doi. 10.1093/cid/ciac830
By:
- Turbett, Sarah E;
- Tomkins-Tinch, Christopher H;
- Anahtar, Melis N;
- Dugdale, Caitlin M;
- Hyle, Emily P;
- Shenoy, Erica S;
- Shaw, Bennett;
- Egbuonu, Kenechukwu;
- Bowman, Kathryn A;
- Zachary, Kimon C;
- Adams, Gordon C;
- Hooper, David C;
- Ryan, Edward T;
- LaRocque, Regina C;
- Bassett, Ingrid V;
- Triant, Virginia A;
- Siddle, Katherine J;
- Rosenberg, Eric;
- Sabeti, Pardis C;
- Schaffner, Stephen F
Publication type:
Article
The Case for Selection at CCR5-Δ32.
Published in:
PLoS Biology, 2005, v. 3, n. 11, p. 1963, doi. 10.1371/journal.pbio.0030378
By:
- Sabeti, Pardis C.;
- Walsh, Emily;
- Schaffner, Steve F.;
- Varilly, Patrick;
- Fry, Ben;
- Hutcheson, Holli B.;
- Cullen, Mike;
- Mikkelsen, Tarjei S.;
- Roy, Jessica;
- Patterson, Nick;
- Cooper, Richard;
- Reich, David;
- Altshuler, David;
- O'Brien, Stephen;
- Lander, Eric S.
Publication type:
Article
Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic.
Published in:
Nature, 2015, v. 524, n. 7563, p. 102, doi. 10.1038/nature14612
By:
- Simon-Loriere, Etienne;
- Faye, Ousmane;
- Faye, Oumar;
- Koivogui, Lamine;
- Magassouba, Nfaly;
- Keita, Sakoba;
- Thiberge, Jean-Michel;
- Diancourt, Laure;
- Bouchier, Christiane;
- Vandenbogaert, Matthias;
- Caro, Valérie;
- Fall, Gamou;
- Buchmann, Jan P.;
- Matranga, Christan B.;
- Sabeti, Pardis C.;
- Manuguerra, Jean-Claude;
- Holmes, Edward C.;
- Sall, Amadou A.
Publication type:
Article
Data sharing: Make outbreak research open access.
Published in:
Nature, 2015, v. 518, n. 7540, p. 477, doi. 10.1038/518477a
By:
- Yozwiak, Nathan L.;
- Schaffner, Stephen F.;
- Sabeti, Pardis C.
Publication type:
Article
Identification of Two Independent Risk Factors for Lupus within the MHC in United Kingdom Families.
Published in:
PLoS Genetics, 2007, v. 3, n. 11, p. e192, doi. 10.1371/journal.pgen.0030192
By:
- Fernando, Michelle M. A.;
- Stevens, Christine R.;
- Sabeti, Pardis C.;
- Walsh, Emily C.;
- McWhinnie, Alasdair J. M.;
- Shah, Anila;
- Green, Todd;
- Rioux, John D.;
- Vyse, Timothy J.
Publication type:
Article
Positive Selection of a Pre-Expansion CAG Repeat of the Human SCA2 Gene.
Published in:
PLoS Genetics, 2005, v. 1, n. 3, p. 404, doi. 10.1371/journal.pgen.0010041
By:
- Fuli Yu;
- Sabeti, Pardis C.;
- Hardenbol, Paul;
- Qing Fu;
- Fry, Ben;
- Xiuhua Lu;
- Ghose, Sy;
- Vega, Richard;
- Perez, Ag;
- Pasternak, Shiran;
- Leal, Suzanne M.;
- Willis, Thomas D.;
- Nelson, David L.;
- Belmont, John;
- Gibbs, Richard A.;
- Abecasis, Goncalo
Publication type:
Article
Predicting gene expression in massively parallel reporter assays: A comparative study.
Published in:
Human Mutation, 2017, v. 38, n. 9, p. 1240, doi. 10.1002/humu.23197
By:
- Kreimer, Anat;
- Zeng, Haoyang;
- Edwards, Matthew D.;
- Guo, Yuchun;
- Tian, Kevin;
- Shin, Sunyoung;
- Welch, Rene;
- Wainberg, Michael;
- Mohan, Rahul;
- Sinnott‐Armstrong, Nicholas A.;
- Li, Yue;
- Eraslan, Gökcen;
- AMIN, Talal Bin;
- Tewhey, Ryan;
- Sabeti, Pardis C.;
- Goke, Jonathan;
- Mueller, Nikola S.;
- Kellis, Manolis;
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COIL: a methodology for evaluating malarial complexity of infection using likelihood from single nucleotide polymorphism data.
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Malaria Journal, 2015, v. 14, n. 1, p. 1, doi. 10.1186/1475-2875-14-4
By:
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- Daniels, Rachel F.;
- Hartl, Daniel L.;
- Sabeti, Pardis C.;
- Wirth, Dyann F.;
- Volkman, Sarah K.;
- Neafsey, Daniel E.
Publication type:
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COIL: a methodology for evaluating malarial complexity of infection using likelihood from single nucleotide polymorphism data.
Published in:
Malaria Journal, 2015, v. 14, n. 1, p. 69, doi. 10.1186/1475-2875-14-4
By:
- Galinsky, Kevin;
- Valim, Clarissa;
- Salmier, Arielle;
- de Thoisy, Benoit;
- Musset, Lise;
- Legrand, Eric;
- Faust, Aubrey;
- Baniecki, Mary Lynn;
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- Daniels, Rachel F.;
- Hartl, Daniel L.;
- Sabeti, Pardis C.;
- Wirth, Dyann F.;
- Volkman, Sarah K.;
- Neafsey, Daniel E.
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Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA.
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BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1603-4
By:
- Broadbent, Kate M.;
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- Ribacke, Ulf;
- Wirth, Dyann;
- Rinn, John L.;
- Sabeti, Pardis C.
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Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA.
Published in:
BMC Genomics, 2015, v. 16, n. 1, p. 454, doi. 10.1186/s12864-015-1603-4
By:
- Broadbent, Kate M;
- Broadbent, Jill C;
- Ulf Ribacke;
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- Rinn, John L;
- Sabeti, Pardis C
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High depth, whole-genome sequencing of cholera isolates from Haiti and the Dominican Republic.
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BMC Genomics, 2012, v. 13, n. 1, p. 468, doi. 10.1186/1471-2164-13-468
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- Ellis, Crystal;
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- Kellis, Manolis;
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- LaRocque, Regina C.;
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- Sabeti, Pardis C.
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Cosi2: an efficient simulator of exact and approximate coalescent with selection.
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Bioinformatics, 2014, v. 30, n. 23, p. 3427, doi. 10.1093/bioinformatics/btu562
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- Shlyakhter, Ilya;
- Sabeti, Pardis C.;
- Schaffner, Stephen F.
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Antigen test swabs are comparable to nasopharyngeal swabs for sequencing of SARS-CoV-2.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-37893-5
By:
- Hassouneh, Sayf Al-Deen;
- Trujillo, Alexa;
- Ali, Sobur;
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- Johnston, Catherine;
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