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Searching for simple rules in Pseudomonas aeruginosa biofilm formation.
- Published in:
- BMC Research Notes, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13104-019-4795-x
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- Article
Systems Biology to Understand and Regulate Human Retroviral Proinflammatory Response.
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- Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.736349
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- Article
Is central dogma a global property of cellular information flow?
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- Frontiers in Physiology, 2012, v. 3, p. 1, doi. 10.3389/fphys.2012.00439
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- Article
Finding self-organization from the dynamic gene expressions of innate immune responses.
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- 2012
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- Publication type:
- Opinion
Finding self-organization from the dynamic gene expressions of innate immune responses.
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- Frontiers in Physiology, 2012, v. 3, p. 1, doi. 10.3389/fphys.2012.00192
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- Article
Collective Dynamics of Specific Gene Ensembles Crucial for Neutrophil Differentiation: The Existence of Genome Vehicles Revealed.
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- PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012116
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- Article
Emergent Genome-Wide Control in Wildtype and Genetically Mutated Lipopolysaccarides-Stimulated Macrophages.
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- PLoS ONE, 2009, v. 4, n. 3, p. 1, doi. 10.1371/journal.pone.0004905
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- Article
Predicting Novel Features of Toll-Like Receptor 3 Signaling in Macrophages.
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- PLoS ONE, 2009, v. 4, n. 3, p. 1, doi. 10.1371/journal.pone.0004661
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- Article
Signaling Flux Redistribution at Toll-Like Receptor Pathway Junctions.
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- PLoS ONE, 2008, v. 3, n. 10, p. 1, doi. 10.1371/journal.pone.0003430
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- Article
Systems Biology and Omics Approaches for Complex Human Diseases.
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- Biomolecules (2218-273X), 2023, v. 13, n. 7, p. 1080, doi. 10.3390/biom13071080
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- Article
Can the second law of thermodynamics hold in cell cultures?
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- Frontiers in Genetics, 2015, p. 1, doi. 10.3389/fgene.2015.00262
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- Article
A concerted increase in readthrough and intron retention drives transposon expression during aging and senescence.
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- eLife, 2024, p. 1, doi. 10.7554/eLife.87811
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- Publication type:
- Article
Attractor Concepts to Evaluate the Transcriptome-wide Dynamics Guiding Anaerobic to Aerobic State Transition in Escherichia coli.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-62804-3
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- Article
ABioTrans: A Biostatistical Tool for Transcriptomics Analysis.
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- Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2019.00499
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- Publication type:
- Article
Advances in systems immunology and cancer.
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- Frontiers in Physiology, 2014, v. 5, p. 1, doi. 10.3389/fphys.2014.00249
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- Article
Gene expression waves.
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- FEBS Journal, 2007, v. 274, n. 11, p. 2878, doi. 10.1111/j.1742-4658.2007.05822.x
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- Article
Defining rules for cancer cell proliferation in TRAIL stimulation.
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- NPJ Systems Biology & Applications, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41540-019-0084-5
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- Publication type:
- Article
Advancing drug-response prediction using multi-modal and -omics machine learning integration (MOMLIN): a case study on breast cancer clinical data.
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- Briefings in Bioinformatics, 2024, v. 25, n. 4, p. 1, doi. 10.1093/bib/bbae300
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- Article
Towards multi-omics synthetic data integration.
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- Briefings in Bioinformatics, 2024, v. 25, n. 3, p. 1, doi. 10.1093/bib/bbae213
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- Article
Machine learning alternative to systems biology should not solely depend on data.
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- Briefings in Bioinformatics, 2022, v. 23, n. 6, p. 1, doi. 10.1093/bib/bbac436
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- Publication type:
- Article
ScatLay: utilizing transcriptome-wide noise for identifying and visualizing differentially expressed genes.
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- Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-74564-1
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- Article
Interpreting the Dynamics and Patterns of Living Systems.
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- 2013
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- Publication type:
- Opinion
Transcriptome-wide Variability in Single Embryonic Development Cells.
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- Scientific Reports, 2014, p. 1, doi. 10.1038/srep07137
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- Publication type:
- Article
Identifying effective evolutionary strategies-based protocol for uncovering reaction kinetic parameters under the effect of measurement noises.
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- BMC Biology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12915-024-02019-4
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- Publication type:
- Article
Discovering differential activation machinery of the Toll-like receptor 4 signaling pathways in MyD88 knockouts
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- FEBS Letters, 2006, v. 580, n. 5, p. 1457, doi. 10.1016/j.febslet.2006.01.046
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- Publication type:
- Article
A systems biology approach to suppress TNF-induced proinflammatory gene expressions.
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- Cell Communication & Signaling, 2013, v. 11, n. 1, p. 1, doi. 10.1186/1478-811X-11-84
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- Article
Macroscopic law of conservation revealed in the population dynamics of Toll-like receptor signaling.
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- Cell Communication & Signaling, 2011, v. 9, n. 1, p. 9, doi. 10.1186/1478-811X-9-9
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- Article
CAN COMPLEX CELLULAR PROCESSES BE GOVERNED BY SIMPLE LINEAR RULES?
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- Journal of Bioinformatics & Computational Biology, 2009, v. 7, n. 1, p. 243, doi. 10.1142/S0219720009003947
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- Publication type:
- Article
Systems biology approach for enhancing limonene yield by re-engineering Escherichia coli.
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- NPJ Systems Biology & Applications, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41540-024-00440-7
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- Article
Globally invariant behavior of oncogenes and random genes at population but not at single cell level.
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- NPJ Systems Biology & Applications, 2023, v. 9, n. 1, p. 1, doi. 10.1038/s41540-023-00290-9
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- Publication type:
- Article
Systems biology strategy reveals PKCδ is key for sensitizing TRAIL-resistant human fibrosarcoma.
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- Frontiers in Immunology, 2015, v. 5, p. 1, doi. 10.3389/fimmu.2014.00659
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- Publication type:
- Article
Beyond MyD88 and TRIF pathways inToll-like receptor signaling.
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- Frontiers in Immunology, 2014, v. 5, p. 1, doi. 10.3389/fimmu.2014.00070
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- Article