Found: 21

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  • TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics.

    Published in:
    Nature Biotechnology, 2023, v. 41, n. 10, p. 1465, doi. 10.1038/s41587-023-01657-3
    By:
    • Mages, Simon;
    • Moriel, Noa;
    • Avraham-Davidi, Inbal;
    • Murray, Evan;
    • Watter, Jan;
    • Chen, Fei;
    • Rozenblatt-Rosen, Orit;
    • Klughammer, Johanna;
    • Regev, Aviv;
    • Nitzan, Mor
    Publication type:
    Article

  • Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing.

    Published in:
    Nature Biotechnology, 2023, v. 41, n. 2, p. 204, doi. 10.1038/s41587-022-01452-6
    By:
    • Simmons, Sean K.;
    • Lithwick-Yanai, Gila;
    • Adiconis, Xian;
    • Oberstrass, Florian;
    • Iremadze, Nika;
    • Geiger-Schuller, Kathryn;
    • Thakore, Pratiksha I.;
    • Frangieh, Chris J.;
    • Barad, Omer;
    • Almogy, Gilad;
    • Rozenblatt-Rosen, Orit;
    • Regev, Aviv;
    • Lipson, Doron;
    • Levin, Joshua Z.
    Publication type:
    Article

  • Author Correction: Massively parallel phenotyping of coding variants in cancer with Perturb-seq.

    Published in:
    2022
    By:
    • Ursu, Oana;
    • Neal, James T.;
    • Shea, Emily;
    • Thakore, Pratiksha I.;
    • Jerby-Arnon, Livnat;
    • Nguyen, Lan;
    • Dionne, Danielle;
    • Diaz, Celeste;
    • Bauman, Julia;
    • Mosaad, Mariam Mounir;
    • Fagre, Christian;
    • Lo, April;
    • McSharry, Maria;
    • Giacomelli, Andrew O.;
    • Ly, Seav Huong;
    • Rozenblatt-Rosen, Orit;
    • Hahn, William C.;
    • Aguirre, Andrew J.;
    • Berger, Alice H.;
    • Regev, Aviv
    Publication type:
    Correction Notice

  • Massively parallel phenotyping of coding variants in cancer with Perturb-seq.

    Published in:
    Nature Biotechnology, 2022, v. 40, n. 6, p. 896, doi. 10.1038/s41587-021-01160-7
    By:
    • Ursu, Oana;
    • Neal, James T.;
    • Shea, Emily;
    • Thakore, Pratiksha I.;
    • Jerby-Arnon, Livnat;
    • Nguyen, Lan;
    • Dionne, Danielle;
    • Diaz, Celeste;
    • Bauman, Julia;
    • Mosaad, Mariam Mounir;
    • Fagre, Christian;
    • Lo, April;
    • McSharry, Maria;
    • Giacomelli, Andrew O.;
    • Ly, Seav Huong;
    • Rozenblatt-Rosen, Orit;
    • Hahn, William C.;
    • Aguirre, Andrew J.;
    • Berger, Alice H.;
    • Regev, Aviv
    Publication type:
    Article

  • Building a high-quality Human Cell Atlas.

    Published in:
    2021
    By:
    • Rozenblatt-Rosen, Orit;
    • Shin, Jay W.;
    • Rood, Jennifer E.;
    • Hupalowska, Anna;
    • Human Cell Atlas Standards and Technology Working Group;
    • Ardlie, Kristin;
    • Clatworthy, Menna;
    • Carninci, Piero;
    • Enard, Wolfgang;
    • Greenleaf, William;
    • Heyn, Holger;
    • Lein, Edward;
    • Levin, Joshua Z.;
    • Linnarsson, Sten;
    • Lundberg, Emma;
    • Meyer, Kerstin;
    • Navin, Nicholas;
    • Nolan, Garry;
    • Teichmann, Sarah;
    • Voet, Thierry
    Publication type:
    Letter

  • Author Correction: Systematic comparison of single-cell and single-nucleus RNA-sequencing methods.

    Published in:
    2020
    By:
    • Ding, Jiarui;
    • Adiconis, Xian;
    • Simmons, Sean K.;
    • Kowalczyk, Monika S.;
    • Hession, Cynthia C.;
    • Marjanovic, Nemanja D.;
    • Hughes, Travis K.;
    • Wadsworth, Marc H.;
    • Burks, Tyler;
    • Nguyen, Lan T.;
    • Kwon, John Y. H.;
    • Barak, Boaz;
    • Ge, William;
    • Kedaigle, Amanda J.;
    • Carroll, Shaina;
    • Li, Shuqiang;
    • Hacohen, Nir;
    • Rozenblatt-Rosen, Orit;
    • Shalek, Alex K.;
    • Villani, Alexandra-Chloé
    Publication type:
    Correction Notice

  • Systematic comparison of single-cell and single-nucleus RNA-sequencing methods.

    Published in:
    Nature Biotechnology, 2020, v. 38, n. 6, p. 737, doi. 10.1038/s41587-020-0465-8
    By:
    • Ding, Jiarui;
    • Adiconis, Xian;
    • Simmons, Sean K.;
    • Kowalczyk, Monika S.;
    • Hession, Cynthia C.;
    • Marjanovic, Nemanja D.;
    • Hughes, Travis K.;
    • Wadsworth, Marc H.;
    • Burks, Tyler;
    • Nguyen, Lan T.;
    • Kwon, John Y. H.;
    • Barak, Boaz;
    • Ge, William;
    • Kedaigle, Amanda J.;
    • Carroll, Shaina;
    • Li, Shuqiang;
    • Hacohen, Nir;
    • Rozenblatt-Rosen, Orit;
    • Shalek, Alex K.;
    • Villani, Alexandra-Chloé
    Publication type:
    Article

  • SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas.

    Published in:
    Nature Genetics, 2009, v. 41, n. 11, p. 1238, doi. 10.1038/ng.465
    By:
    • Bass, Adam J.;
    • Watanabe, Hideo;
    • Mermel, Craig H.;
    • Soyoung Yu;
    • Perner, Sven;
    • Verhaak, Roel G.;
    • So Young Kim;
    • Wardwell, Leslie;
    • Tamayo, Pablo;
    • Gat-Viks, Irit;
    • Ramos, Alex H.;
    • Woo, Michele S.;
    • Weir, Barbara A.;
    • Getz, Gad;
    • Beroukhim, Rameen;
    • O'Kelly, Michael;
    • Dutt, Amit;
    • Rozenblatt-Rosen, Orit;
    • Dziunycz, Piotr;
    • Komisarof, Justin
    Publication type:
    Article

  • The extremely halophilic archaeon Halferax volcanii has two very different dihydrofolate reductases.

    Published in:
    Molecular Microbiology, 2000, v. 35, n. 6, p. 1493, doi. 10.1046/j.1365-2958.2000.01815.x
    By:
    • Ortenberg, Ron;
    • Rozenblatt-Rosen, Orit;
    • Mevarech, Moshe
    Publication type:
    Article

  • An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission.

    Published in:
    Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47647-0
    By:
    • Ding, Jiarui;
    • Garber, John J.;
    • Uchida, Amiko;
    • Lefkovith, Ariel;
    • Carter, Grace T.;
    • Vimalathas, Praveen;
    • Canha, Lauren;
    • Dougan, Michael;
    • Staller, Kyle;
    • Yarze, Joseph;
    • Delorey, Toni M.;
    • Rozenblatt-Rosen, Orit;
    • Ashenberg, Orr;
    • Graham, Daniel B.;
    • Deguine, Jacques;
    • Regev, Aviv;
    • Xavier, Ramnik J.
    Publication type:
    Article

  • The Menin Tumor Suppressor Protein Is Phosphorylated in Response to DNA Damage.

    Published in:
    PLoS ONE, 2011, v. 6, n. 1, p. 1, doi. 10.1371/journal.pone.0016119
    By:
    • Francis, Joshua;
    • Lin, Wenchu;
    • Rozenblatt-Rosen, Orit;
    • Meyerson, Matthew
    Publication type:
    Article

  • Mitogenic and progenitor gene programmes in single pilocytic astrocytoma cells.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11493-2
    By:
    • Reitman, Zachary J.;
    • Paolella, Brenton R.;
    • Bergthold, Guillaume;
    • Pelton, Kristine;
    • Becker, Sarah;
    • Jones, Robert;
    • Sinai, Claire E.;
    • Malkin, Hayley;
    • Huang, Ying;
    • Grimmet, Leslie;
    • Herbert, Zachary T.;
    • Sun, Yu;
    • Weatherbee, Jessica L.;
    • Alberta, John A.;
    • Daley, John F.;
    • Rozenblatt-Rosen, Orit;
    • Condurat, Alexandra L.;
    • Qian, Kenin;
    • Khadka, Prasidda;
    • Segal, Rosalind A.
    Publication type:
    Article

  • Nuclei multiplexing with barcoded antibodies for single-nucleus genomics.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10756-2
    By:
    • Gaublomme, Jellert T.;
    • Li, Bo;
    • McCabe, Cristin;
    • Knecht, Abigail;
    • Yang, Yiming;
    • Drokhlyansky, Eugene;
    • Van Wittenberghe, Nicholas;
    • Waldman, Julia;
    • Dionne, Danielle;
    • Nguyen, Lan;
    • De Jager, Philip L.;
    • Yeung, Bertrand;
    • Zhao, Xinfang;
    • Habib, Naomi;
    • Rozenblatt-Rosen, Orit;
    • Regev, Aviv
    Publication type:
    Article

  • Viral Perturbations of Host Networks Reflect Disease Etiology.

    Published in:
    PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002531
    By:
    • Gulbahce, Natali;
    • Han Yan;
    • Dricot, Amélie;
    • Padi, Megha;
    • Byrdsong, Danielle;
    • Franchi, Rachel;
    • Deok-Sun Lee;
    • Rozenblatt-Rosen, Orit;
    • Mar, Jessica C.;
    • Calderwood, Michael A.;
    • Baldwin, Amy;
    • Bo Zhao;
    • Santhanam, Balaji;
    • Braun, Pascal;
    • Simonis, Nicolas;
    • Huh, Kyung-Won;
    • Hellner, Karin;
    • Grace, Miranda;
    • Chen, Alyce;
    • Rubio, Renee
    Publication type:
    Article

  • Tim-3 adapter protein Bat3 acts as an endogenous regulator oftolerogenic dendritic cell function.

    Published in:
    Science Immunology, 2022, v. 7, n. 69, p. 1, doi. 10.1126/sciimmunol.abm0631
    By:
    • Ruihan Tang;
    • Acharya, Nandini;
    • Subramanian, Ayshwarya;
    • Purohit, Vinee;
    • Tabaka, Marcin;
    • Yu Hou;
    • Danyang He;
    • Dixon, Karen O.;
    • Lambden, Connor;
    • Junrong Xia;
    • Rozenblatt-Rosen, Orit;
    • Sobel, Raymond A.;
    • Chao Wang;
    • Regev, Aviv;
    • Anderson, Ana C.;
    • Kuchroo, Vijay K.
    Publication type:
    Article

  • CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq.

    Published in:
    Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0938-8
    By:
    • Hashimshony, Tamar;
    • Senderovich, Naftalie;
    • Avital, Gal;
    • Klochendler, Agnes;
    • de Leeuw, Yaron;
    • Anavy, Leon;
    • Gennert, Dave;
    • Shuqiang Li;
    • Livak, Kenneth J.;
    • Rozenblatt-Rosen, Orit;
    • Dor, Yuval;
    • Regev, Aviv;
    • Yanai, Itai
    Publication type:
    Article

  • Identification of FAM111A as an SV40 Host Range Restriction and Adenovirus Helper Factor.

    Published in:
    PLoS Pathogens, 2012, v. 8, n. 10, p. 1, doi. 10.1371/journal.ppat.1002949
    By:
    • Fine, Debrah A.;
    • Rozenblatt-Rosen, Orit;
    • Padi, Megha;
    • Korkhin, Anna;
    • James, Robert L.;
    • Adelmant, Guillaume;
    • Yoon, Rosa;
    • Luxuan Guo;
    • Berrios, Christian;
    • Ying Zhang;
    • Calderwood, Michael A.;
    • Velmurgan, Soundarapandian;
    • Jingwei Cheng;
    • Marto, Jarrod A.;
    • Hill, David E.;
    • Cusick, Michael E.;
    • Vidal, Marc;
    • Florens, Laurence;
    • Washburn, Michael P.;
    • Litovchick, Larisa
    Publication type:
    Article

  • Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins.

    Published in:
    Nature, 2012, v. 487, n. 7408, p. 491, doi. 10.1038/nature11288
    By:
    • Rozenblatt-Rosen, Orit;
    • Deo, Rahul C.;
    • Padi, Megha;
    • Adelmant, Guillaume;
    • Calderwood, Michael A.;
    • Rolland, Thomas;
    • Grace, Miranda;
    • Dricot, Amélie;
    • Askenazi, Manor;
    • Tavares, Maria;
    • Pevzner, Samuel J.;
    • Abderazzaq, Fieda;
    • Byrdsong, Danielle;
    • Carvunis, Anne-Ruxandra;
    • Chen, Alyce A.;
    • Cheng, Jingwei;
    • Correll, Mick;
    • Duarte, Melissa;
    • Fan, Changyu;
    • Feltkamp, Mariet C.
    Publication type:
    Article

  • Author Correction: Nuclei multiplexing with barcoded antibodies for single-nucleus genomics.

    Published in:
    2020
    By:
    • Gaublomme, Jellert T.;
    • Li, Bo;
    • McCabe, Cristin;
    • Knecht, Abigail;
    • Yang, Yiming;
    • Drokhlyansky, Eugene;
    • Van Wittenberghe, Nicholas;
    • Waldman, Julia;
    • Dionne, Danielle;
    • Nguyen, Lan;
    • De Jager, Philip L.;
    • Yeung, Bertrand;
    • Zhao, Xinfang;
    • Habib, Naomi;
    • Rozenblatt-Rosen, Orit;
    • Regev, Aviv
    Publication type:
    Correction Notice

  • Author Correction: Nuclei multiplexing with barcoded antibodies for single-nucleus genomics.

    Published in:
    2020
    By:
    • Gaublomme, Jellert T.;
    • Li, Bo;
    • McCabe, Cristin;
    • Knecht, Abigail;
    • Yang, Yiming;
    • Drokhlyansky, Eugene;
    • Van Wittenberghe, Nicholas;
    • Waldman, Julia;
    • Dionne, Danielle;
    • Nguyen, Lan;
    • De Jager, Philip L.;
    • Yeung, Bertrand;
    • Zhao, Xinfang;
    • Habib, Naomi;
    • Rozenblatt-Rosen, Orit;
    • Regev, Aviv
    Publication type:
    Correction Notice

  • Multiplexed single-cell transcriptional response profiling to define cancer vulnerabilities and therapeutic mechanism of action.

    Published in:
    Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-17440-w
    By:
    • McFarland, James M.;
    • Paolella, Brenton R.;
    • Warren, Allison;
    • Geiger-Schuller, Kathryn;
    • Shibue, Tsukasa;
    • Rothberg, Michael;
    • Kuksenko, Olena;
    • Colgan, William N.;
    • Jones, Andrew;
    • Chambers, Emily;
    • Dionne, Danielle;
    • Bender, Samantha;
    • Wolpin, Brian M.;
    • Ghandi, Mahmoud;
    • Tirosh, Itay;
    • Rozenblatt-Rosen, Orit;
    • Roth, Jennifer A.;
    • Golub, Todd R.;
    • Regev, Aviv;
    • Aguirre, Andrew J.
    Publication type:
    Article