Works matching AU Rokita, Jo Lynne

Results: 9

AutoGVP: a dockerized workflow integrating ClinVar and InterVar germline sequence variant classification.

Published in:

Bioinformatics, 2024, v. 40, n. 3, p. 1, doi. 10.1093/bioinformatics/btae114

By:

Kim, Jung;
Naqvi, Ammar S;
Corbett, Ryan J;
Kaufman, Rebecca S;
Vaksman, Zalman;
Brown, Miguel A;
Miller, Daniel P;
Phul, Saksham;
Geng, Zhuangzhuang;
Storm, Phillip B;
Resnick, Adam C;
Stewart, Douglas R;
Rokita, Jo Lynne;
Diskin, Sharon J

Publication type:

Article

Limited antitumor activity of combined BET and MEK inhibition in neuroblastoma.

Published in:

2020

By:

Healy, Jason R.;
Hart, Lori S.;
Shazad, Alexander L.;
Gagliardi, Maria E.;
Tsang, Matthew;
Elias, Jimmy;
Ruden, Jacob;
Farrel, Alvin;
Rokita, Jo Lynne;
Li, Yimei;
Wyce, Anastasia;
Barbash, Olena;
Batra, Vandana;
Samanta, Minu;
Maris, John M.;
Schnepp, Robert W.

Publication type:

journal article

BARD1 germline variants induce haploinsufficiency and DNA repair defects in neuroblastoma.

Published in:

JNCI: Journal of the National Cancer Institute, 2024, v. 116, n. 1, p. 138, doi. 10.1093/jnci/djad182

By:

Randall, Michael P;
Egolf, Laura E;
Vaksman, Zalman;
Samanta, Minu;
Tsang, Matthew;
Groff, David;
Evans, J Perry;
Rokita, Jo Lynne;
Layeghifard, Mehdi;
Shlien, Adam;
Maris, John M;
Diskin, Sharon J;
Bosse, Kristopher R

Publication type:

Article

Pediatric high-grade glioma resources from the Children's Brain Tumor Tissue Consortium.

Published in:

Neuro-Oncology, 2020, v. 22, n. 1, p. 163, doi. 10.1093/neuonc/noz192

By:

Ijaz, Heba;
Koptyra, Mateusz;
Gaonkar, Krutika S;
Rokita, Jo Lynne;
Baubet, Valerie P;
Tauhid, Lamiya;
Zhu, Yuankun;
Brown, Miguel;
Lopez, Gonzalo;
Zhang, Bo;
Diskin, Sharon J;
Vaksman, Zalman;
Consortium, Children's Brain Tumor Tissue;
Mason, Jennifer L;
Appert, Elizabeth;
Lilly, Jena;
Lulla, Rishi;
Raedt, Thomas De;
Heath, Allison P;
Felmeister, Alex

Publication type:

Article

CAMKV Is a Candidate Immunotherapeutic Target in MYCN Amplified Neuroblastoma.

Published in:

Frontiers in Oncology, 2020, p. 1, doi. 10.3389/fonc.2020.00302

By:

Sussman, Robyn T.;
Rokita, Jo Lynne;
Huang, Kevin;
Raman, Pichai;
Rathi, Komal S.;
Martinez, Daniel;
Bosse, Kristopher R.;
Lane, Maria;
Hart, Lori S.;
Bhatti, Tricia;
Pawel, Bruce;
Maris, John M.

Publication type:

Article

A transcriptome-based classifier to determine molecular subtypes in medulloblastoma.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 10, p. 1, doi. 10.1371/journal.pcbi.1008263

By:

Rathi, Komal S.;
Arif, Sherjeel;
Koptyra, Mateusz;
Naqvi, Ammar S.;
Taylor, Deanne M.;
Storm, Phillip B.;
Resnick, Adam C.;
Rokita, Jo Lynne;
Raman, Pichai

Publication type:

Article

Epigenomic profiling of neuroblastoma cell lines.

Published in:

Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0458-y

By:

Upton, Kristen;
Modi, Apexa;
Patel, Khushbu;
Kendsersky, Nathan M.;
Conkrite, Karina L.;
Sussman, Robyn T.;
Way, Gregory P.;
Adams, Rebecca N.;
Sacks, Gregory I.;
Fortina, Paolo;
Diskin, Sharon J.;
Maris, John M.;
Rokita, Jo Lynne

Publication type:

Article

ASCL1 is a MYCN- and LMO1-dependent member of the adrenergic neuroblastoma core regulatory circuitry.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-13515-5

By:

Wang, Lu;
Tan, Tze King;
Durbin, Adam D.;
Zimmerman, Mark W.;
Abraham, Brian J.;
Tan, Shi Hao;
Ngoc, Phuong Cao Thi;
Weichert-Leahey, Nina;
Akahane, Koshi;
Lawton, Lee N.;
Rokita, Jo Lynne;
Maris, John M.;
Young, Richard A.;
Look, A. Thomas;
Sanda, Takaomi

Publication type:

Article

annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 17, p. 1, doi. 10.1186/s12859-020-03922-7

By:

Gaonkar, Krutika S.;
Marini, Federico;
Rathi, Komal S.;
Jain, Payal;
Zhu, Yuankun;
Chimicles, Nicholas A.;
Brown, Miguel A.;
Naqvi, Ammar S.;
Zhang, Bo;
Storm, Phillip B.;
Maris, John M.;
Raman, Pichai;
Resnick, Adam C.;
Strauch, Konstantin;
Taroni, Jaclyn N.;
Rokita, Jo Lynne

Publication type:

Article