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Progress and challenges in sorghum biotechnology, a multipurpose feedstock for the bioeconomy.
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- Journal of Experimental Botany, 2022, v. 73, n. 3, p. 646, doi. 10.1093/jxb/erab450
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- Article
Systems genomics approaches provide new insights into Arabidopsis thaliana root growth regulation under combinatorial mineral nutrient limitation.
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- PLoS Genetics, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pgen.1008392
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- Article
Strategies for Avoiding Reinventing the Precollege Education and Outreach Wheel.
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- Genetics, 2004, v. 166, n. 4, p. 1601, doi. 10.1534/genetics.166.4.1601
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- Article
Molecular and cellular approaches for the detection of protein–protein interactions: latest techniques and current limitations.
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- Plant Journal, 2008, v. 53, n. 4, p. 610, doi. 10.1111/j.1365-313X.2007.03332.x
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- Article
Freezing-sensitive tomato has a functional CBF cold response pathway, but a CBF regulon that differs from that of freezing-tolerant Arabidopsis.
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- Plant Journal, 2004, v. 39, n. 6, p. 905, doi. 10.1111/j.1365-313X.2004.02176.x
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- Article
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
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- Nucleic Acids Research, 2008, v. 36, p. D623
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- Article
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.
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- Nucleic Acids Research, 2008, v. 36, p. D449, doi. 10.1093/nar/gkm908
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- Article
Interdependent iron and phosphorus availability controls photosynthesis through retrograde signaling.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27548-2
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- Article
Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana.
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- Nature Biotechnology, 2010, v. 28, n. 2, p. 149, doi. 10.1038/nbt.1603
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- Article
Plant Metabolic Network 15: A resource of genome‐wide metabolism databases for 126 plants and algae.
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- Journal of Integrative Plant Biology, 2021, v. 63, n. 11, p. 1888, doi. 10.1111/jipb.13163
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Enhancing gene regulatory network inference through data integration with markov random fields.
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- Scientific Reports, 2017, p. 41174, doi. 10.1038/srep41174
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- Article
Ontologies in biology: design, applications and future challenges.
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- Nature Reviews Genetics, 2004, v. 5, n. 3, p. 213, doi. 10.1038/nrg1295
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- Article
Tetrad pollen formation in quartet mutants ofArabidopsis thaliana is associated with persistence of pectic polysaccharides of the pollen mother cell wall.
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- Plant Journal, 1998, v. 15, n. 1, p. 79, doi. 10.1046/j.1365-313X.1998.00183.x
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- Article
The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize.
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- BMC Systems Biology, 2016, v. 10, p. 1, doi. 10.1186/s12918-016-0369-x
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- Article
The rules of gene expression in plants: Organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana.
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- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-438
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- Article
Measuring semantic similarities by combining gene ontology annotations and gene co-function networks.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0474-7
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- Article
Measuring semantic similarities by combining gene ontology annotations and gene co-function networks.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0474-7
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- Article
A high-throughput behavioral screening platform for measuring chemotaxis by C. elegans.
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- PLoS Biology, 2024, v. 22, n. 6, p. 1, doi. 10.1371/journal.pbio.3002672
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- Article
Plants use molecular mechanisms mediated by biomolecular condensates to integrate environmental cues with development.
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- Plant Cell, 2023, v. 35, n. 9, p. 3173, doi. 10.1093/plcell/koad062
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- Article
Systems Analysis of Plant Functional, Transcriptional, Physical Interaction, and Metabolic Networks.
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- Plant Cell, 2012, v. 24, n. 10, p. 3859, doi. 10.1105/tpc.112.100776
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- Article
MetaCyc: a multiorganism database of metabolic pathways and enzymes.
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- Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d511, doi. 10.1093/nar/gkj128
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- Article
PatMatch: a program for finding patterns in peptide and nucleotide sequences.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w262, doi. 10.1093/nar/gki368
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- Article
MetaCyc: a multiorganism database of metabolic pathways and enzymes.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d438
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- Article
Unified display of Arabidopsis thaliana physical maps from AtDB, the A.thaliana database.
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- Nucleic Acids Research, 1999, v. 27, n. 1, p. 79, doi. 10.1093/nar/27.1.79
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- Article
QTG-Finder2: A Generalized Machine-Learning Algorithm for Prioritizing QTL Causal Genes in Plants.
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- G3: Genes | Genomes | Genetics, 2020, v. 10, n. 7, p. 2411, doi. 10.1534/g3.120.401122
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- Article
QTG-Finder: A Machine-Learning Based Algorithm To Prioritize Causal Genes of Quantitative Trait Loci in Arabidopsis and Rice.
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- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 10, p. 3129, doi. 10.1534/g3.119.400319
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- Article
Target Enrichment Improves Mapping of Complex Traits by Deep Sequencing.
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- G3: Genes | Genomes | Genetics, 2016, v. 6, n. 1, p. 67, doi. 10.1534/g3.115.023671
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- Article
Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites.
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- Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 1022, doi. 10.1093/bib/bbx020
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- Article
A glimpse into the future of genome-enabled plant biology from the shores of Cold Spring Harbor.
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- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0870-y
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- Article
Systematic discovery of novel eukaryotic transcriptional regulators using sequence homology independent prediction.
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- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3853-9
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- Article
Uncoupling differential water usage from drought resistance in a dwarf Arabidopsis mutant.
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- Plant Physiology, 2022, v. 190, n. 4, p. 2115, doi. 10.1093/plphys/kiac411
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- Article
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants.
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- Plant Physiology, 2017, v. 173, n. 4, p. 2041, doi. 10.1104/pp.16.01942
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- Article
Patterns of Metabolite Changes Identified from Large-Scale Gene Perturbations in Arabidopsis Using a Genome-Scale Metabolic Network.
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- Plant Physiology, 2015, v. 167, n. 4, p. 1685, doi. 10.1104/pp.114.252361
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- Article
PlantMetabolomics.org: A Web Portal for Plant Metabolomics Experiments.
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- Plant Physiology, 2010, v. 152, n. 4, p. 1807, doi. 10.1104/pp.109.151027
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- Article
Non‐destructive, whole‐plant phenotyping reveals dynamic changes in water use efficiency, photosynthesis, and rhizosphere acidification of sorghum accessions under osmotic stress.
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- Plant Direct, 2024, v. 8, n. 3, p. 1, doi. 10.1002/pld3.571
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- Article
Status of genome function annotation in model organisms and crops.
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- Plant Direct, 2023, v. 7, n. 7, p. 1, doi. 10.1002/pld3.499
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First Plant Cell Atlas symposium report.
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- Plant Direct, 2022, v. 6, n. 6, p. 1, doi. 10.1002/pld3.406
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- Article
First plant cell atlas workshop report.
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- Plant Direct, 2020, v. 4, n. 10, p. 1, doi. 10.1002/pld3.271
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- Article
METACLUSTER—an R package for context-specific expression analysis of metabolic gene clusters.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3178, doi. 10.1093/bioinformatics/btz021
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- Article
Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models.
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- Frontiers in Plant Science, 2012, v. 3, p. 1, doi. 10.3389/fpls.2012.00124
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- Article
Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models.
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- Frontiers in Plant Science, 2012, v. 3, p. 1, doi. 10.3389/fpls.2012.00124
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- Publication type:
- Article