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soibean: High-Resolution Taxonomic Identification of Ancient Environmental DNA Using Mitochondrial Pangenome Graphs.
- Published in:
- Molecular Biology & Evolution, 2024, v. 41, n. 10, p. 1, doi. 10.1093/molbev/msae203
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- Article
leeHom: adaptor trimming and merging for Illumina sequencing reads.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 18, p. e141, doi. 10.1093/nar/gku699
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- Article
DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays.
- Published in:
- Nature Methods, 2006, v. 3, n. 7, p. 503, doi. 10.1038/nmeth888
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- Article
DamMet: ancient methylome mapping accounting for errors, true variants, and post-mortem DNA damage.
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- GigaScience, 2019, v. 8, n. 4, p. N.PAG, doi. 10.1093/gigascience/giz025
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- Article
Ancient Clostridium DNA and variants of tetanus neurotoxins associated with human archaeological remains.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41174-0
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- Article
Segtor: Rapid Annotation of Genomic Coordinates and Single Nucleotide Variations Using Segment Trees.
- Published in:
- PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0026715
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- Article
Unsupervised detection of fragment length signatures of circulating tumor DNA using non-negative matrix factorization.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.71569
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- Article
euka : Robust tetrapodic and arthropodic taxa detection from modern and ancient environmental DNA using pangenomic reference graphs.
- Published in:
- Methods in Ecology & Evolution, 2023, v. 14, n. 11, p. 2717, doi. 10.1111/2041-210X.14214
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- Article
trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-329
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- Article
Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees.
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- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-77
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- Article
Human paternal and maternal demographic histories: insights from high-resolution Y chromosome and mtDNA sequences.
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- Investigative Genetics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-2223-5-13
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- Article
Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA.
- Published in:
- Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0776-0
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- Article
Kiwi genome provides insights into evolution of a nocturnal lifestyle.
- Published in:
- Genome Biology, 2015, v. 16, n. 1, p. 147, doi. 10.1186/s13059-015-0711-4
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- Article
Matriptase-Deficient Mice Exhibit Ichthyotic Skin with a Selective Shift in Skin Microbiota.
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- Journal of Investigative Dermatology, 2009, v. 129, n. 10, p. 2435, doi. 10.1038/jid.2009.104
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- Article
HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph human mtDNA haplogroup inference.
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- PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011148
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- Publication type:
- Article
Benchmarking software tools for trimming adapters and merging next-generation sequencing data for ancient DNA.
- Published in:
- Frontiers in Bioinformatics, 2023, p. 1, doi. 10.3389/fbinf.2023.1260486
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- Article
The complete genome sequence of a Neanderthal from the Altai Mountains.
- Published in:
- Nature, 2014, v. 505, n. 7481, p. 43, doi. 10.1038/nature12886
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- Article
Reduced Genotoxicity of Avian Sarcoma Leukosis Virus Vectors in Rhesus Long-term Repopulating Cells Compared to Standard Murine Retrovirus Vectors.
- Published in:
- Molecular Therapy, 2008, v. 16, n. 9, p. 1617, doi. 10.1038/mt.2008.135
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- Publication type:
- Article
Corrigendum to “Reduced Genotoxicity of Avian Sarcoma Leukosis Virus Vectors in Rhesus Long-term Repopulating Cells Compared to Standard Murine Retrovirus Vectors”.
- Published in:
- 2008
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- Publication type:
- Correction Notice
Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples.
- Published in:
- Genetics, 2019, v. 212, n. 3, p. 587, doi. 10.1534/genetics.119.302057
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- Article
Bioinformatic flowchart and database to investigate the origins and diversity of Clan AA peptidases.
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- Biology Direct, 2009, v. 4, p. 1, doi. 10.1186/1745-6150-4-3
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- Article
Predisposition to Cancer Caused by Genetic and Functional Defects of Mammalian Atad5.
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- PLoS Genetics, 2011, v. 7, n. 8, p. 1, doi. 10.1371/journal.pgen.1002245
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- Article
Identification of Neural Crest and Glial Enhancers at the Mouse Sox10 Locus through Transgenesis in Zebrafish.
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- PLoS Genetics, 2008, v. 4, n. 9, p. 1, doi. 10.1371/journal.pgen.1000174
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- Article
Gpnmb is a melanoblast-expressed, MITF-dependent gene.
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- Pigment Cell & Melanoma Research, 2009, v. 22, n. 1, p. 99, doi. 10.1111/j.1755-148X.2008.00518.x
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- Article
A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data.
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- Bioinformatics, 2020, v. 36, n. 3, p. 828, doi. 10.1093/bioinformatics/btz660
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- Article
glactools: a command-line toolset for the management of genotype likelihoods and allele counts.
- Published in:
- Bioinformatics, 2018, v. 34, n. 8, p. 1398, doi. 10.1093/bioinformatics/btx749
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- Article
gargammel: a sequence simulator for ancient DNA.
- Published in:
- Bioinformatics, 2017, v. 33, n. 4, p. 577, doi. 10.1093/bioinformatics/btw670
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- Publication type:
- Article
deML: robust demultiplexing of Illumina sequences using a likelihood-based approach.
- Published in:
- Bioinformatics, 2015, v. 31, n. 5, p. 770, doi. 10.1093/bioinformatics/btu719
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- Article
freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers.
- Published in:
- Bioinformatics, 2013, v. 29, n. 9, p. 1208, doi. 10.1093/bioinformatics/btt117
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- Article
The stat3/socs3a Pathway Is a Key Regulator of Hair Cell Regeneration in Zebrafish stat3/socs3a Pathway: Regulator of Hair Cell Regeneration.
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- Journal of Neuroscience, 2012, v. 32, n. 31, p. 10662, doi. 10.1523/JNEUROSCI.5785-10.2012
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- Article
Correction: Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans.
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- 2016
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- Correction Notice
Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans.
- Published in:
- PLoS Genetics, 2016, v. 12, n. 4, p. 1, doi. 10.1371/journal.pgen.1005972
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- Article